RNA id: XM_021607229.2


Basic Information

Item Value
RNA id XM_021607229.2
length 2794
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC110526343
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 64753029 ~ 64765798 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgattgatagattttgttgtggattaatacatgaagaaaacaaaacatttttattGTCATACATTTGATTGTTTATAGCCTAAGTAGTATCCCCGAAATCTGCCTATAACCTATAACAGATCACATGGTTAAGTATCAACATTGAAGGAAGAATGGAAAATAGCAATTAGTCGATCCAAGATTTGCGCTCAGGAGatcatggtgtgtgtgagagcgatgCGCAACGAGTAAGGAAGGTGGAACGGTGTATGTTGGGGAAAGGGTCTCGTTTCTATCCCAACGCTGCTGCAAATCTCAACCTGGTACAGACACACAGTTTTCAGTAAACATTTGTTCTAACTAATGCGGGTGTCGTTATTTGTAGAGCCGGACAGGCGCGCGTGTATGGAGCTTTTTAGGAGTTGGGAATGCTCGGTAAGCACGTTAgatcctattattattattaggcttCCTGAATGAGGACACGGATGGATTTCGTGGCACTGTTGTCAAAATGACTCGGACTCTCACTCTCCTCGCTTTCCTTTTCACTTTGTTAAAACGTTGCAGTTGTGCGGACTCAGAGGAGCGTCTGATGAACTGGCTGCTTAGAAACGATCGCTACAACAAGCTGATCCGCCCAGCTGTGAACAGGACAGAGCGAGTCACTGTCAAACTACAGGTGTCCCTGGCCCAACTCATCAGTGTGaatgagagagagcagaTTATGACCACCAATGTTTGGCTCACACAGCACTGGGATGACTACAGGCTATCATGGGACCCTTCTCAATATGATGGCATTGACAAGCTTCGTATTCCTTCCAGACACATCTGGCTACCTGATATTGTGCTCTATAACAATGCGGATGGAACCTATGAGGTAACAGTCTTCACCAATGCCATTGTCCAGTTCAACGGCAGCATCGTCTGGCTGCCTCCGGCCATCTATAAGAGTGCCTGCAAGATCGAGGTCAAGCACTTCCCCTTTGACCAGCAGAACTGCACGCTCAAGTTCCGGTCATGGACCTACGACCACACCGAGCTCGATTTGGTCCTGAAGACAGGGGTGGCCAGCATGGACGACTTCACTCCCAGTGGGGAATGGGACATCTTGGCCCTGCCGGGCAGGCGGACAGTTAACCCTCTGGATCCTACCTACGTGGACCTCACCTATGACTTCATCATCAAGAGGAAGCCGCTGTTCTACACCATCAACCTAATCATCCCCTGTGTCCTCATCACCTCTCTGGCCATCCTGGTGTTCTACCTGCCGTCTGACTGTGGGGAGAAGATGACACTGTGTATCTCAGTCCTCCTGGCCCtcactgtgttcctcctcctGATCTCCAAGATCGTCCCTCCCACCTCGCTGGACGTGCCTCTGATCGGGAAGTACCTAATGTTCACCATGGTGCTGGTGACCTTCTCTATcattaccagtgtgtgtgtgctcaacgTACACCACCGCTCCCCCAGCACACACACCATGCCCTCCTGGGTCAAGGTAGTGTTCCTCAACAAGCTGCCCCATCTACTCTTCATGAGACGCCCGCAGAATAACTCTGCCCGCCAGCGGCTACGCCAGCAGAGACAACTCCGAGCTCGCAGGTCCATCCTGGCGGACCTGGGCTACCCTGCCACCACCACGCCCAAAACAGCCACCGCTGCCGCCATGTCTTCCTCTtctgccttcctctcctctgcctcggCCTTCGCCTCCCCGGGACACTTTTACAACAAAGTCACAGCTCCgctggggtacacccacaccttCAGGAAGGGGGAGGCCCGCTCCACCGAGTTCCTGCCCAACAGCTTCCCCTCCTCCCAGGACCTCCGTCAGAGAGGCAGCCCAGACTGGGGGGGAGATGTCCAGGAGGCAGTGGACGGGGTCCGCTTCGTGGCTGATCACATGATGGGGGACGATGATAACCAGAATGTGATCGAGGACTGGAAGTATGTGGCAATGGTGGTGGACCGTATGTTCCTGTGGATCTTTATAATAGTGTGTGTGACTGGAACCCTGGGTCTTTTCCTCCAGCCTCTATTTCAGCATTCAATAGTCCCCATCCAGCAGCCCAGCTCAGACACACCCCGTACCTGAACCCCCCCCCAAGAAGTATGGGGGTCATACATAGAAACAAGGGTCATAGAACATCAACCAACGCCATGTGGCCTACAGCAATACAagtctctgtatctctttctgtTTCTATTTCCTGGTCCTAACGTGACACAACGGTACAATGAAGAGTTGACTTTTTTTCATGTAGCTGAAGCAGAGATACAAATATGTCCCTCGAAAACTAGACTGAAAGTACAAGCATTACCCGGGTGGAGTAATAACCCACATAATACAGAGAGATATGTCAGATATCATTTGACTCCTATCCATGTTATATCACCCTGTTGTTGAGATGTAAAAGTGTaatgaaaaaaaatctataaatgtATAAAAAAGTTCAGTGAGTTTGATTAAATTCATTAACACCCAATAAAGTCTAAAGTGGTGGAGTACTTCATGAAATTATGTTCAGTGTGATTAGATAAAATAGCTTGACTCAGTTAAAGCAATTTTCAAAGTGCAAATTAGAATATTAGGTCACATTGATAAGATGGATATTGGGCAAAATCATGTAGCTCAGAACATTATGACTCAAGCTAGGGTGTTATAAAGAGGCCTCCTAACTGATACACCCCATATATAAAATGAGTTGGTGTATGAGTTACAAGTCTATAACCTGTGAATTACGGGGGATATTCCCCACAGATGTAGGATTTTGATGCAATAAACAGTTCCAGTTTAAAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU604685 lncRNA upstream 179957 64553864 ~ 64573072 (+) True G533991
TU604645 lncRNA upstream 245931 64504106 ~ 64507098 (+) True G533953
TU604597 lncRNA upstream 336200 64415718 ~ 64416829 (+) True G533907
TU604592 lncRNA upstream 337594 64415108 ~ 64415435 (+) True G533903
TU604586 lncRNA upstream 346168 64404930 ~ 64406861 (+) False G533898
TU605161 lncRNA downstream 7849 64773647 ~ 64774014 (+) True G534445
TU605156 lncRNA downstream 11583 64777381 ~ 64778182 (+) True LOC110526344
TU605167 lncRNA downstream 19822 64785620 ~ 64804863 (+) True G534449
TU605234 lncRNA downstream 190732 64956530 ~ 64957769 (+) True G534509
TU605235 lncRNA downstream 196641 64962439 ~ 64964242 (+) True G534510
XM_036980689.1 mRNA upstream 253408 64495035 ~ 64499621 (+) False LOC110526337
XM_036980690.1 mRNA upstream 253408 64495035 ~ 64499621 (+) True LOC110526337
XM_021607215.2 mRNA upstream 253413 64494819 ~ 64499616 (+) False LOC110526337
XM_021607216.2 mRNA upstream 253413 64494877 ~ 64499616 (+) False LOC110526337
XM_021607217.2 mRNA upstream 253413 64494915 ~ 64499616 (+) False LOC110526337
XM_021607230.2 mRNA downstream 3301 64769099 ~ 64781704 (+) False LOC110526344
XM_036980693.1 mRNA downstream 66826 64832624 ~ 64851098 (+) False chrna5
XM_021607231.2 mRNA downstream 66827 64832625 ~ 64851098 (+) False chrna5
XM_021607232.2 mRNA downstream 66833 64832631 ~ 64851098 (+) True chrna5
XM_036980694.1 mRNA downstream 89178 64854976 ~ 64858185 (+) True LOC110526346
TU603025 other upstream 1409274 63308533 ~ 63343755 (+) True G532489
TU603064 other upstream 1413531 63338236 ~ 63339498 (+) False LOC100750227
TU602734 other upstream 1554295 63032931 ~ 63198734 (+) False G532237
TU602899 other upstream 1738043 63012258 ~ 63014986 (+) False LOC110526311
TU602760 other upstream 1930413 62820420 ~ 62822616 (+) True G532259
TU605157 other downstream 3349 64769147 ~ 64776336 (+) False LOC110526344
TU605171 other downstream 24524 64790322 ~ 64847104 (+) True G534453
TU605418 other downstream 347482 65113280 ~ 65117956 (+) True G534653
TU605427 other downstream 390711 65156509 ~ 65161330 (+) True LOC110526356
TU605959 other downstream 1081825 65847623 ~ 65849441 (+) True G535150

Expression Profile