RNA id: XM_021607230.2


Basic Information

Item Value
RNA id XM_021607230.2
length 5067
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC110526344
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 64769099 ~ 64781704 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGTAGCAGCTTGTCGGCACCGCGCGCTTTTATTACTTCCACTTCCCACTTTCTCTCTTCTTCTGCCTCCTTCTGTCGTCCGTGTCCTGATAGATTGAGGATTCATTTTCTGCAATCCTTAACAatgaacgcccaatttttcttcattttttcatGTTCGTTCTTTTTTCCCCATTTGTCGGGAGGCTCCTGCTCTGAGGCAGAACACAGGTTGTTCTCAGTGATATTCTCCAGCTACAATCAGTACATCCGCCCAGTGGAGAATGTGTCTGAACCAGTTATCGTGCAGTTTGAGGTGTCCATGTCCCAGCTGGTCAAAgtgGATGAAGTTAACCAGATTATGGAGACAAACCTGTGGCTGAGACATATCTGGAATGACTACAAACTGAGGTGGGATCCCAAAAACTTTGGAGGAGTGGAGTTCATTCGAGTGCCTTCTAGCAGGATATGGAAGCCAGATATCGTGCTGTACAATAATGCAGTGGGAGATTTCCAGGTGGACGATAAGACCAAGGCCCTGCTTCGCTACAATGGGGATGTGACCTGGATCCCTCCGGCCATCTTCAAGAGCTCCTGCAAGATTGACGTTACCTACTTCCCCTTCGACTACCAGAACTGCACCATGAAGTTTGGCTCTTGGACGTATGACAAGGCCAAGATAGACCTGGTTCTGATTGGCTCCACCATCAACCTCCATGACTTCTGGGAGAGTGGCGAGTGGACGATTATCAACGCCCCGGGTTACAAACATGACATCAAGTACAACTGCTGTGAGGAGATCTACACAGACATCACCTACTCCCTGTACATCAGACGGCTGCCTCTCTTCTATACCATCAACATGATCATCCCTTGTCTGCTCATCTCCTTTCTCACTGTGCTGGTCTTCTACTTGCCTTCTGACTGTGGGGAGAAGATCACCCTCTGTATCtccgtcctcctctccctcactgtgTTCCTCCTGGTCATCACCGAAACCATCCCTTCTACGTCGCTGGTCATCCCCCTCATCGGGGAGTACCTCCTCTTCACCATGATCTTCGTCACCCTCTCCATTGTCATCACCGTGTTCGTGCTGAACGTGCACTACCGCACGCCCAAGACCCACACCATGCCGTGCTGGGTGCGCAGTGTCTTCCTGGGGCTTCTACCCAGGGTCATGTTCATGACCCGGCCGGAGAGGGACCCTGAGAGGCTGCCTGGGGGGGTGGTTCAGCAGCTGATGCCCCAAGCCTCACGGCCCTGTGTGGTCTACACCACAGGAACCATGCAGGGGCAGCAGAAGCCCCAGGCCCTGGTCTCCACCGTGGCTGCCAGTGTGCTCCCAAGCCTGGCCCAGCGACAGCGCCTCTTCATCAGCACGGAGCTCACCAACCTCAATAACCTTAGCCttggtggggatggtggtggtgaCTCGGTTAATGCGGGCTCCAGCTTCCTGTGTCGCGAGGGCCGCTGCAACTGCTGCTGGCGTCAGAGGTCCACCAAGCTGCCTACTGAGacgggaggagggggtggaggggtggggagCATCGGGACCCACAGTGGAGGAGGGTCTGCTGGGATTGGGGGGGTTTGTGGAGGCGGTGGAAGCTCCTGCTCCAGCTCAGAGTCTCTGGATGGCAGGCTGAAGACTCTGTCCCCTCACTTCTCACCGGAGGTCAGGGAGGCCATGGAAAGTGTCAAGTATATCGCCGAAAACATGAGAATACAGAACGAAGCCAAGGAGGTCCAGGATGACTGGAAGTACGTTGCCATGGTGATCGACAGGATATTCCTGTGGTTGTTCATCTTGGTGTGTATCCTGGGGACCGCTGGGCTCTTTATCCAGCCCCTCCTATTGTTCAATATGTGACCCACTCATACACACAGCAATTACACAGTGACTGAGTGTTTTAAATCATACATGCACAGTCATTTTGTGTATCACCCAGTGATGCTGACCAAAGAAGCTGAGACGAACCAATACTGTGAACGGAAGGGAACCAGATTATGGAGGAAGGCAAGCTGATGCCAGCTGTTCCATGTCACTTCTCAGTATGTAGATACGTTTCTTATTGCTAaagtgtggtgtagtagtgatCACTTAGCTCCTGAGGACCAGACTCTGAAACCATGGCAACGTATAACTCCCGTACTGCTGCCTACCCATTCCCTTTTTTGTTTGCTTTGTGTTAATGACTTCATCATAGTGTCACTTGATTATGCCTGGCACAAAGAACCACACTATCGTCAACAAAAGGACCGTGACTAAAGGAACATCTATTGGACCAAAGGATCCCAAACATGTACATAGCAATGACTGCTTAAAGGGGGCTTTCCAAAAGTACATAACAAGTATCTCAAGTCAATTTCACACCTTATTGAAGTCATATCATGTTTTCAAATGTTGAATATCACCGAGTCATTTTGATATTGTTTATTTGTGAAATATGAATGTATTCCTAAAAACACATGCTGTATGTTCTTATTTACTACAACTATACAGCACCATTTCAATCTGATTCTAATGCTCAATAAGGTTTCAATGAACCACGGTGTCATATAATATACAGATAAGCTATTCATAGAAATCACAAACTGTTGAACATTAAAAGGCTATGATGCAGGATGGGTAACGTTATTACACCATATGGGTGAATGTGGAAAAACTATGAAAGCAACCTGAAATGATTTTCATTGTGCTGTGAGGGGTGACACCATGTGGTTATTATCTGCTACTACAAGTGACCACAATATGATCCAGAGGTCACTTACCATATGTTTGCAATCAAAGACACAAGATTTTGTATCTtcattttcagttttttttatttgtgcTGGAGAAGCACACACAACTTTGAAAACAGCTCTTTAAAGGCTCTTTCAACAGAAACGTCTGTCTGCAATGATCCCATGGTCATAGGATGAAGTGACTTCTGCAGTGGACTGAACACATGCTAACCTACCTGTAAACTCATTGCATTCCCAAATCGATATTTCTCTCCCTTATGAAAATTGAGTTTGGAGGTCCAGCTGGCAGGCAGGATGTAGATGCGATTATCAGTAGCAACAAGACCATGTAGAGGTTGGGTATAACCCTGTTacatcctccctgcctctctgcctcctaGCCTGGCCTCCCATCCCTGCCTCTCtagctccctgcctgcctcccctctctgccCTGGGCCCCCTTCTGCTTTATTGGACCACAATCAATATGGAGACCTGGTGATGAAGTACATCATTAGTCTGGGGCCTGGGCTACGGTCTTCATCTCACCATCCTACCGCTATGCCAAAGAGCATTTCTCCTGCTTTAACTTGACACTACTTATACTCTCTGTTAATAAGGAGGATGTGGTTGAGATCTCGTTATGTTGTACCATCATTCAAAAAACAGTTGGGTGTACAAGAGGAGGAAATGCACAATTATGAGTTATAGATATCTATGGCCTGTGGTATCTATGATAGAGAGTGAAACATTTTAAATAGGATTTTTGGGGAGCATTTCAATCCCACATTTGGGCAGACGAGGAATCTCTGGATGTTGTTTCTGTGGCTGTATGTTGTAGTCAGTAAACTGTAATCAGGTTGTCACTGAATCGTAACTGGATGTTAGCCAGGAAGCACAGTCACATACCGTTGTACTCTATCCCTTCTGATAACATTCCCCCTGCTGATTGATTGAATTAAAGCTCACTCAGTGCTCATTTCAGTGAACTAGTTTGAGGGGGAGATCTGTAACAGACCGTACTAAAGCCTGAAGGTTGTGGGGAGGCTGAGGGGATGAGTGCATTTATAGAACAGCGATGGTTCCATGACCACACTTGTGTGATGAGCATCCTTGTCTGAGACCTGAAGAGTTGCATTGCATGCAGGTATACATGCATGCGTTCTGTCCCTGTCGGTCACACTTAAGAATTGTCCCAGTGTTTTTTAGTCAGCATGAAATCATTTAGCATATTTTCATTTGAGAGGAAAGCAAGTTGAGATCATTGATTCCGTGCACCTGTTGTTCTTTTTAGTTACACATGGTCAATGTTAAATAATACCCATCATCCTCCAGGTCTATGGTGCAAACATATCCTGTAGCTGCGACAGTCCTACAAATACAGGAAATGACGTCATTCGTATTCACTCTTCTTAGTTAACATGTCTCAACTAAAAGAATCCCTGTCTAGTTTCAGGTCCATACCACAAATACACAAGGTAGAAAGAGCCAACCAACAAGTGTTTCAACAAGACTTGAACACAATGATCATGTTCATCCTCATCCTGTGTGCCTTGTCAAGAGAGGCCATGGTCCAAACCACAGGCAGGTCAAAGTCCATTAATTATTGAAGATGATTGAACTCTCTTTTAGATAATTACAATATGACACTCTACACATAAACGGTTTACATGTTGCAGATATTTTATGAGCCAAATACTTTTTATTTTCTGAAATATTAGCCAAGAAGATTTTTCCAGCAAAGATCTATTGGACTTCTACAGGAACAATAATGGAGGGAAGTGACCTTGTGGTAAAATGTAGTACACATGGGCGCAAGGAAGACAAAGTGGCATATGTTTACTTGTGCATTAACGGGGTTGCAGTGGAACAGAAGAGAGTTATACAAGAAGACACCTCTTTCACCATGAAAAGTGTTACTGGCCAACAGAGTggcaattacagctgtgtgttCTCTAAAACCCAATATCCACTCTCTGAAGTGCAGGGAAAAGGAGATAATTCCCTTTCCATCCAGGTGATGGACCGTATACTCCCTGCAGACATATCACTTGCAGGCTCAAGAACTGTGAGAAAGGGAGATGGTGTGGAGTTTAAGTGTACAATCTCAGGCCCAAGTTTTCAAACAAAAAATATCAGTGACTTAGTTCACGCTTACCTCTGCAAGTATGGCTCTGTTGTTCAGATCCAGGTGTTTGACGTAAAGAGCACGGAGGCAACTTTTACGATTAAAAGTTTTAATAAGAATGACGCAGGTAACTACAGTTGTGTGATTGATCTGCAATCAAAAACCCTCAAAGATGAAGACAGAACATTATATGGAAATAATGCAGTATTTCTACAGGTTAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU604826 lncRNA upstream 3421 64765499 ~ 64765678 (+) True LOC110526343
TU604832 lncRNA upstream 8594 64760234 ~ 64760505 (+) True G534130
TU604830 lncRNA upstream 10984 64757830 ~ 64758115 (+) True G534128
TU604685 lncRNA upstream 196027 64553864 ~ 64573072 (+) True G533991
TU604645 lncRNA upstream 262001 64504106 ~ 64507098 (+) True G533953
TU605167 lncRNA downstream 3916 64785620 ~ 64804863 (+) True G534449
TU605234 lncRNA downstream 174826 64956530 ~ 64957769 (+) True G534509
TU605235 lncRNA downstream 180735 64962439 ~ 64964242 (+) True G534510
TU605255 lncRNA downstream 182598 64964302 ~ 64964542 (+) True G534530
TU605257 lncRNA downstream 186093 64967797 ~ 64968004 (+) True G534532
XM_021607229.2 mRNA upstream 3301 64753029 ~ 64765798 (+) False LOC110526343
XM_036980689.1 mRNA upstream 269478 64495035 ~ 64499621 (+) False LOC110526337
XM_036980690.1 mRNA upstream 269478 64495035 ~ 64499621 (+) True LOC110526337
XM_021607215.2 mRNA upstream 269483 64494819 ~ 64499616 (+) False LOC110526337
XM_036980693.1 mRNA downstream 50920 64832624 ~ 64851098 (+) False chrna5
XM_021607231.2 mRNA downstream 50921 64832625 ~ 64851098 (+) False chrna5
XM_021607232.2 mRNA downstream 50927 64832631 ~ 64851098 (+) True chrna5
XM_036980694.1 mRNA downstream 73272 64854976 ~ 64858185 (+) True LOC110526346
XM_021607237.2 mRNA downstream 100018 64881722 ~ 64884136 (+) True LOC118936302
TU603025 other upstream 1425344 63308533 ~ 63343755 (+) True G532489
TU603064 other upstream 1429601 63338236 ~ 63339498 (+) False LOC100750227
TU602734 other upstream 1570365 63032931 ~ 63198734 (+) False G532237
TU602899 other upstream 1754113 63012258 ~ 63014986 (+) False LOC110526311
TU602760 other upstream 1946483 62820420 ~ 62822616 (+) True G532259
TU605171 other downstream 8618 64790322 ~ 64847104 (+) True G534453
TU605418 other downstream 331576 65113280 ~ 65117956 (+) True G534653
TU605427 other downstream 374805 65156509 ~ 65161330 (+) True LOC110526356
TU605959 other downstream 1065919 65847623 ~ 65849441 (+) True G535150
TU607370 other downstream 1821081 66602785 ~ 66604053 (+) True G536406

Expression Profile