RNA id: XM_021607232.2


Basic Information

Item Value
RNA id XM_021607232.2
length 2553
RNA type mRNA
GC content 0.50
exon number 8
gene id chrna5
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 64832624 ~ 64851098 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGGGAAGATACCTGATAGTGATTAGTGATCAGACTcttctgggagagagaggggggctggCTTTCtggaggaggttgaggaggaggaggaggcgaaggaggagagagaggagagaaaggggggctGGTTTTCtggaggaggttgaggaggaggaaaaggaggagagagaggagagagagcgtgcTACCGTTCATTTAGAGGCAGCAGCAAGAGACTGAAGCATCGTCTGTCTGAGCTGAGGCAGGGCTGCATGGAATGGAGGAAAACTAGAGAGCAGCGCTGCTTGTCTGTCTGCCGACACACTGTCTGGACTCTCACGCTGCATTCAGGATAGATTGtgtgttgagtggatgatagGAATAGAGGATGCAGGTCTGATGTGCACAGTATGTCTGTTTGTGATCATATGTGAatgggtttgtgtgtgttcacTACATCCAAGCAGGTGAGTGTAATGTGTTCGCATGTACACtgttgtgcatgtgtgtatttgtgaaaTGTGTAagatgaaatgtgtgtgtttgcaaaTGTGCAAATTAGTTTCTATGTGTATGCAGTGCGTATCTGTATccatgtttgtgtgtacatgtaagGTATCTAAACTGATGCATACATATCCCATAACTTCCTCTGTTTGTGcactgtgttgtgctgtgttttcCTAGACTCTAGTTGTGTTGTAGTCATGGCTGCCTGAGGGACTGCTCCCTGGCTGTGTGGATCTGGAGCCCCCTCTGATATCATGCTGAGAGTTGGGCCAGCGGCCACCACTCTACTCCTGCTGCTGTCATACTGCTGCTGCCACCTGTGTCACTCTCTGGGGCCTACACCACCAGGCTGTCATGGATACCAGCATGCCACAGAAGCCAGCTGATGCACTGATACAATGAGGAATCCCTAAACTGTCCTCCTATGCCAAGACAGAGGACAAACTGTTCAAGAACCTCTTCAGAAACTACCAGAAATGGGTGAGGCCTGTGGAATACCTCAACGGCACAGTACGGGTCAGATTTGGACTGGCCATCTCCCAGCTAGTGGACGTGGACGAGAAGAACCAGTTGATGACAACCAATGTGTGGATGAAACAGGAATGGTTGGACATGAAGCTACGCTGGGACCCTGATGACTACCTGGGCATCACTAACATCAGAGTCCCCTCGGACTCCATCTGGATCCCAGACATTGTGCTCTATGACAATGCCGATGGACGTTTTGAGGGCTCTGTCACCAAGGCTGTTGTCAAGTATGATGGCACCATCATCTGGACACAGCCCGCTAACTACAAGTCAGCCTGCATCATCGATGTCACCTTCTTCCCCTTTGACCTGCAGAACTGCTCCATGAAGTTTGGCTCCTGGACCTATGATGGCTCACAGGTTGACATCCTCCTGGAGGACTTCCATGTAGATAAGAGGGACTACTTTGACAATGGTGAATGGGAGATAGTGAAAGCGACAGGCAGCCGTGGTCTGAGGATGGACGGTCCCTGCCACTTCCCCTTCATCACCTACTCCTTTATCATCCGTAGACTGCCGCTCTTCTACACcctcttcctcattatcccctgtATCGGCCTTTCCTTCCTCACCATCCTGGTCTTCTACCTGCCCTCCAACGGCGGGGAGAAGATCTCCCTGTGCACCTCTGTGCTGGTGTCCCTCACCGTCTTCCTGCTCGTGATCGAGGAGATTATTCCGTCCTCCTCCAAGGTCATCCCTCTTATCGGGGAGTACCTGGTGTTCACCATGATCTTTGTCACGCTCTCAATTGTCATCACCGTCTTCGCTATCAACATCCACCACCGCTCCTCATCCACGCACCAAGGCATGGCGCCCTGGGTGCGCCGTATCTTCCTGCACAAGCTGCCTAAGCTGCTGTGTATGCGCAGCCACGTGGACCGCTATGCTACCCCAGGCGGGGCCAGGGAAGGACTGACAGGGAGAGAGTGGGCAGGACTGGCAAGAAGAGAGGGGGTAGTAGGGGGCATTACGAAGGGTTGTTCACCAGAGtccacccctcatctctcctctagGAATAACCTGCAGGCTGCTTTGGATTCTATCCGCTACATCACCATGCATGTGGTCAAGGAGAACGAGGTCAGAGAGgtggtgCAGGACTGGAAGTTTGTGGCTCAAGTTCTGGATCGTGTGTTCCTGTGGACCTTTCTCCTGGTCTCAGTActgggctctgctctgctcttcatCCCTGTCATCTACAAATGGGCAAACATCATCGTCCCCAACCATGCAGGTGGCAGCGGATAAGACTAAACTGAGACTAAGTGCACTGAGCACAATAATTTCAGAGACACTACAGTCAGTGCAGATAAAGAGACACTTACTCACGTGGGTGTGGGAGACCAGTTATAATTGCAATGGATTCTAGTTCCATCATGATTTTTGATTTGTGTAAATTAATGAGGGATTATTGTCTCTATGTTGCTGTATCTGTTTATAGATTAAATTAACAATCAATTGTTTTATATTCTGAAAGGAGGATACCTCCCTATAGGCATATCTCACAAAGTAAAGTATAACAATGAATACAA

Function

GO: NA

KEGG:

id description
K04807 CHRNA5; nicotinic acetylcholine receptor alpha-5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU605167 lncRNA upstream 27768 64785620 ~ 64804863 (+) True G534449
TU605156 lncRNA upstream 54449 64777381 ~ 64778182 (+) True LOC110526344
TU605161 lncRNA upstream 58617 64773647 ~ 64774014 (+) True G534445
TU604826 lncRNA upstream 66953 64765499 ~ 64765678 (+) True LOC110526343
TU604832 lncRNA upstream 72126 64760234 ~ 64760505 (+) True G534130
TU605234 lncRNA downstream 105432 64956530 ~ 64957769 (+) True G534509
TU605235 lncRNA downstream 111341 64962439 ~ 64964242 (+) True G534510
TU605255 lncRNA downstream 113204 64964302 ~ 64964542 (+) True G534530
TU605257 lncRNA downstream 116699 64967797 ~ 64968004 (+) True G534532
TU605426 lncRNA downstream 214282 65065380 ~ 65161330 (+) False LOC110526356
XM_021607230.2 mRNA upstream 50927 64769099 ~ 64781704 (+) False LOC110526344
XM_021607229.2 mRNA upstream 66833 64753029 ~ 64765798 (+) False LOC110526343
XM_036980689.1 mRNA upstream 333010 64495035 ~ 64499621 (+) False LOC110526337
XM_036980690.1 mRNA upstream 333010 64495035 ~ 64499621 (+) True LOC110526337
XM_021607217.2 mRNA upstream 333015 64494915 ~ 64499616 (+) False LOC110526337
XM_036980694.1 mRNA downstream 3878 64854976 ~ 64858185 (+) True LOC110526346
XM_021607237.2 mRNA downstream 30624 64881722 ~ 64884136 (+) True LOC118936302
XM_021607239.2 mRNA downstream 40588 64891686 ~ 64895115 (+) True LOC110526348
XR_002473931.2 mRNA downstream 48703 64899801 ~ 64962147 (+) False LOC110526349
XR_002473932.2 mRNA downstream 48703 64899801 ~ 64962147 (+) False LOC110526349
TU605157 other upstream 56295 64769147 ~ 64776336 (+) False LOC110526344
TU603025 other upstream 1488876 63308533 ~ 63343755 (+) True G532489
TU603064 other upstream 1493133 63338236 ~ 63339498 (+) False LOC100750227
TU602734 other upstream 1633897 63032931 ~ 63198734 (+) False G532237
TU602899 other upstream 1817645 63012258 ~ 63014986 (+) False LOC110526311
TU605418 other downstream 262182 65113280 ~ 65117956 (+) True G534653
TU605427 other downstream 305411 65156509 ~ 65161330 (+) True LOC110526356
TU605959 other downstream 996525 65847623 ~ 65849441 (+) True G535150
TU607370 other downstream 1751687 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 2162122 67013220 ~ 67018653 (+) True G536995

Expression Profile