RNA id: XM_036980694.1


Basic Information

Item Value
RNA id XM_036980694.1
length 2776
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC110526346
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 64854976 ~ 64858185 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAACCCTTATAAACCAACATGCCACACAAAAGCCAAAGTTAACTGCACATTTTACACGTGGCTTCCATATACATAATATGAAGAACAATTGATAAATGATGACATACATTGGAAGCATGACATTGTGCCTTTTGTTATTTCTGTTGATTATGTGTGGTTCAGTTTGCCATGGTGGGAAGTTGCTGGTCTTTCCTGGGGAGGGAAGTCACTGGGTTAACATGGACATTTTGATCAAGGCTCTTCACTCTCAGGGACACACCATCACAGTGGTACGAATGACAAAAAGTTGGTATATCAAAGAAGAATCGCCCTACTACAGTTCTATTACAATACCTGTCACTGACGCTACGGATGAGGAATTTGTAAAGCCAATTTTGAAGAAAATAATTGATATAGAGAGAGGAACGAGCTCTGTATTAAactttatacatttgcaaatcgAGATGTTCTCTGCCAGGTCTAAGTTTCATAAATATGCTAGTGACTTAGCAACTGCTGTATTGAAAGACAAGGGTTTAATAAAGACCCTAAAGGAGAGCCAGTATGACCTGGTGCTTACTGACCCATTTTGGGGAGGAGGTCTATTGGTGGCTCACTATCTTCAGCTACCTCTAGTCTACAATGTACGGTGGACAATCAGTGGAGAGGGACATTTAATTATTGCACCATCACCAATGTCGTACATTCCAATGATTTTATCAGGGCACTCAGACAAAATGACTTTCACAGAGAGAGTAAAGAACATGCTTTTATATTTGCTATTTACTGTTCGGGACAGGTTGATTGTCTGGCCACATTACCAGGCTGTTTGTGATGAGTTTTTCCAACCAGGTGTCGACTTCAAAGAGTTATTACAAGGAGCTGATCTGTGGCTCATGAGAGTTGACTTTGTGTTTGAGTTCCCTCGTCCCACCATGCCTAATGTTATCTATATGGGAGGGTTCCAATGTAATCCTGCCAAGCCTCTTCCCCAAGACCTGGAGGAGTTTGTTCATAGTTCAGGGGAACATGGAATCATTATCATGTCTTTGGGGACTTTCGTTACTGAATTTCCACATGATATAGCTGATGTGATTGCTGCTGCTTTTTCCCAACTGCCTCAGAAGGTAATCTGGAGACACAAAGGAGACAGACCAGCTTCTCTGGGCAACAACACCTTAGTAGTTGACTGGATGCCTCAGAATGATCTGTTAGGACACCCTAAGACAAGGCTGTTTGTAGCTCATGGAGGAACAAATGGGGTTCAAGAGGCTATCTACCATGGAATTCCTGTTGTGGGTCTACCTCTGTTTAATGATCAATATGACAACCTCCTTCgtctgaaagagagaggaggagcaaagCTTTTATCCATGGCAACAGTAGACAAGAACAATAACTTCCTAGAGGCCTTACAGGAAGTTCTGGATGAGCCGTCCTACAGGATGAACATGCAGAGACTCTCCAGGCTACACCGGGACGTGCCAATGGAACCCCTGGACACTGCCCTCTTCTGGATTGAGTTTGTCATGAGACACAAAGGTGCTGCTCACCTGCGTACAAACTCCTACAAAATGCCTTGGTACTCCTACCACTCTGTAGATGTTGTCCTGATGTTGTTGGGTGTTGTGTcagtgcttcttcttcttcttgttgcAATAGTCAGATATTTATGCATTAGAAAATGCTTGAAAAGAAAGATTAAAAGAGAATGAGCAGATCCAATTCTCCACATTCTGGTGCACACAAATAGTAGGATATGTATGACTTAAAGCTGTTATATGGAACTTTTAGAGCGACCCAACAAAACTCCTATAGATATGCGAGTTAtggatctgtcattctcattgaaagcaagtctaagacgccgtagatctgttctatgtgtgctatctCTATGCTTCCCACGTTTAAGTATCTTTTTgcttcttttactttcggttttgtacaccagcttcaaacagcaggAAATACaacatttttggttatggaaaatatatttcacagtggtttagatgataCAATAATTCTCTACACTACACTTACTTGTTTTGCCACATagactgaaattaggcaaacgattacaattttagcaaccaggaaatggcagagtgatttctgcatagtacATCTTTAAATCATGAAAATGTATAATGTTGAATTGATGCCAACATAATAAAATGCTTATGTATAATTTAGTGTGGAATATATTTGTTGTCAAGTATTTCCAGATGGTTGTGCATTTTGTGATTCAATTCTACACTGCAAATATTTACTGTAAGTGTTACATTCACAGTGTTAAAGATTTTTTACTCTGTGTAGTGTAAAAAAAATCAAAACCTCatccatcattatcatatttaccatcatgctctattgcaggttgatGTTTAgtattgtttgtttcaatatctgtgtttttgcatgtacattgatctTATGCTACAGAAAGATACATACTTCGCCAGCCAGCATAATGTAatttgcaggcctgatgtggcttGCGAGCCAAGAATTTCAGACCACAGTGTTAGGGAGAAACTAGCCCATCAAAGAAAGGCCATATGatgtatgtaatgtattgtcataaaggGTTTAATCTTAATTAAACTATAACACATAGGCACTCACTTCGTGAAGGCTACAGGCCTGGAAGTGAATGAACAAATGCAACAAactctgtcactaacaaacacAGTAATGGGTGGTAACTCGATCATTCCCTCAAAAGGCAGACTGGTAAATATACAATTAAGGCTTTACACCCTACAGTGTTAAAATATAATAAACTTCTAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K00699 UGT; glucuronosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU605167 lncRNA upstream 50113 64785620 ~ 64804863 (+) True G534449
TU605156 lncRNA upstream 76794 64777381 ~ 64778182 (+) True LOC110526344
TU605161 lncRNA upstream 80962 64773647 ~ 64774014 (+) True G534445
TU604826 lncRNA upstream 89298 64765499 ~ 64765678 (+) True LOC110526343
TU604832 lncRNA upstream 94471 64760234 ~ 64760505 (+) True G534130
TU605234 lncRNA downstream 98345 64956530 ~ 64957769 (+) True G534509
TU605235 lncRNA downstream 104254 64962439 ~ 64964242 (+) True G534510
TU605255 lncRNA downstream 106117 64964302 ~ 64964542 (+) True G534530
TU605257 lncRNA downstream 109612 64967797 ~ 64968004 (+) True G534532
TU605426 lncRNA downstream 207195 65065380 ~ 65161330 (+) False LOC110526356
XM_036980693.1 mRNA upstream 3878 64832624 ~ 64851098 (+) False chrna5
XM_021607231.2 mRNA upstream 3878 64832625 ~ 64851098 (+) False chrna5
XM_021607232.2 mRNA upstream 3878 64832631 ~ 64851098 (+) True chrna5
XM_021607230.2 mRNA upstream 73272 64769099 ~ 64781704 (+) False LOC110526344
XM_021607229.2 mRNA upstream 89178 64753029 ~ 64765798 (+) False LOC110526343
XM_021607237.2 mRNA downstream 23537 64881722 ~ 64884136 (+) True LOC118936302
XM_021607239.2 mRNA downstream 33501 64891686 ~ 64895115 (+) True LOC110526348
XR_002473931.2 mRNA downstream 41616 64899801 ~ 64962147 (+) False LOC110526349
XR_002473932.2 mRNA downstream 41616 64899801 ~ 64962147 (+) False LOC110526349
XR_005052194.1 mRNA downstream 41616 64899801 ~ 64962147 (+) False LOC110526349
TU605171 other upstream 7872 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 78640 64769147 ~ 64776336 (+) False LOC110526344
TU603025 other upstream 1511221 63308533 ~ 63343755 (+) True G532489
TU603064 other upstream 1515478 63338236 ~ 63339498 (+) False LOC100750227
TU602734 other upstream 1656242 63032931 ~ 63198734 (+) False G532237
TU605418 other downstream 255095 65113280 ~ 65117956 (+) True G534653
TU605427 other downstream 298324 65156509 ~ 65161330 (+) True LOC110526356
TU605959 other downstream 989438 65847623 ~ 65849441 (+) True G535150
TU607370 other downstream 1744600 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 2155035 67013220 ~ 67018653 (+) True G536995

Expression Profile