RNA id: XM_021607237.2


Basic Information

Item Value
RNA id XM_021607237.2
length 2041
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC118936302
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 64881722 ~ 64884136 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGAAAAACCGGAGCGTTTGAAAATTGCGGGTGGAGCAACACGGATGTCAAgagactatactatactgacttcGCCTTTCCGCTCTGGTTTCCGAGATTATTACAAATATCGACGAACTTATTTACAGCCATAATAGGCTTTGAAATAGTCTTCACTAACAACTATTTGGATGAAAACCGGAACGTAAAATTAATGCATGTGTGAAGCAGCTAGTGAAGATGTGTCTCCATGGTATCTTCATTGTTACCCTGTTGACCCTCTCTATTCCTGCTGTCCATGGTGGGAAAGTCCTGGTGTTTCCTCAAGACGGCAGCCACTGGATCAACATGAAGGTCATTATTGAAGCGCTGCATTCAAGAGGtcacagtgtgtcagtagtgcgGCCATCAGACAGCTGGTACATCAAGGAAACCTCCCCTCACTACAGTTCAATCACAATTGATATTCCAGGTGGAGCTGATGAGGAATTCTTTAGCTCATTTGTGTCAAGACaaatacagatacagagagagggaaagtctGCTTGGACTCGTTTTAGTTTGGACATGGAGTTGAAGGACAGATTTTCTGAAATGCACCGCAAAGTGTGTGAGATGGTAATCCAAATGTTAGAGAATGAACCGTTGATGCAGTCTATTAGAGAAACCAAGTATGACTTGGTTCTGACAGACCCAGCCAATGGGGGAGGTGTTGTGCTGGCGCACTATTTAAATGTGCCCCTTGTTTTCAATGTTAGATGGACTATACATGGTGAGGCTCATTTTGCTATTGCTCCCTCTCCGCTATCGTATGTTCCATTTCCTGTTGCAGAGTTAACAGACAATATGAGTTTTTTTCAGAGGGTCCGTAACTTCCTAGTTTATGTCATCAGGCAGCATCTGTACAAACAGACAGTGGGGCCTCATTATTCCACTTTGGTTAGTCGTTACTTTGGTCCTGAGGTCGACTACTTCTCATTGTTTCAAGCTGCTGATTTATGGCTCATGAGAGTTGACTTTGTGTTTGAGTTCCCTCGTCCCACCATGCCTAATGTTATCTATATGGGAGGGTTCCAATGTAAACCTGCCAAGCCTCTTCCCCAAGACCTGGAGGAGTTTGTTCATAGTTCAGGGGAACATGGAGTCATTATCATGTCTTTGGGAACTTTAATTGGACAACTTCCACATGATATAGCTGATGAGATAGCTGCTGCTTTTTCCCACCTGCCTCAGAAGGTAATCTGGAGGTACAAAGGAGACAGACCAGCTACTCTGGGCAACAACACCTTACTAGTTGACTGGATGCCTCAGAATGATCTTTTAGGACACCCTAAGACAAGGCTGTTTGTAGCTCATGGAGGAACAAATGGTATTTTCGAGGCTATCTACCACAGTGTTCCAATAGTAGGCCTTCCTCTGGTGTTCGACCAACCTGACAATCTTTCTCGAATGAAAGTGAAGGGTGTAGCAAAGGTTGTGGATTTAGCAACTCTAGATAGAAACATTTTCACCCGAGCCTTACAGGAAGTTCTGAATGAGCCGTCCTACAGGATGAACATGCAGAGACTCTCCAGGCTACACCGGGACGTGCCAATGGGACCCCTGGACACTGCCCTCTTCTGGATTGAGTTTGTCATGAGACACAAAGGTGCTGCTCACCTGCGTACAGAGTCCTACAGAATGCCCTGGTACTCCTACCACTCTGTAGATGTAATGGTGTTTTTACTGACTGTTGTGTTATTTACTCTGCTGGTTTTCATTGGCATTATCAGATGTTTCTGTTGCAGGGCATGtttgaaaataaaaattaaaGAGGAATGATTATGGATTTCATCTGTACAGAGAGTGGTACATACAGAGTGTGGTACATACAATATCTGTACAGAGTGTGGTACATACTTGTTTTCTCACTAATTTTACTTTTTGTTCACGTGACAaatacagttgaaattggaagtttacacacacctaagtcaagtacatttaaactcagtttttcccaattcctgacatttaatcctcgtaaaaattccctgtcttaggtcagttaggatcactactt

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K00699 UGT; glucuronosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU605167 lncRNA upstream 76859 64785620 ~ 64804863 (+) True G534449
TU605156 lncRNA upstream 103540 64777381 ~ 64778182 (+) True LOC110526344
TU605161 lncRNA upstream 107708 64773647 ~ 64774014 (+) True G534445
TU604826 lncRNA upstream 116044 64765499 ~ 64765678 (+) True LOC110526343
TU604832 lncRNA upstream 121217 64760234 ~ 64760505 (+) True G534130
TU605234 lncRNA downstream 72394 64956530 ~ 64957769 (+) True G534509
TU605235 lncRNA downstream 78303 64962439 ~ 64964242 (+) True G534510
TU605255 lncRNA downstream 80166 64964302 ~ 64964542 (+) True G534530
TU605257 lncRNA downstream 83661 64967797 ~ 64968004 (+) True G534532
TU605426 lncRNA downstream 181244 65065380 ~ 65161330 (+) False LOC110526356
XM_036980694.1 mRNA upstream 23537 64854976 ~ 64858185 (+) True LOC110526346
XM_036980693.1 mRNA upstream 30624 64832624 ~ 64851098 (+) False chrna5
XM_021607231.2 mRNA upstream 30624 64832625 ~ 64851098 (+) False chrna5
XM_021607232.2 mRNA upstream 30624 64832631 ~ 64851098 (+) True chrna5
XM_021607230.2 mRNA upstream 100018 64769099 ~ 64781704 (+) False LOC110526344
XM_021607239.2 mRNA downstream 7550 64891686 ~ 64895115 (+) True LOC110526348
XR_002473931.2 mRNA downstream 15665 64899801 ~ 64962147 (+) False LOC110526349
XR_002473932.2 mRNA downstream 15665 64899801 ~ 64962147 (+) False LOC110526349
XR_005052194.1 mRNA downstream 15665 64899801 ~ 64962147 (+) False LOC110526349
XR_005052195.1 mRNA downstream 15665 64899801 ~ 64962147 (+) False LOC110526349
TU605171 other upstream 34618 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 105386 64769147 ~ 64776336 (+) False LOC110526344
TU603025 other upstream 1537967 63308533 ~ 63343755 (+) True G532489
TU603064 other upstream 1542224 63338236 ~ 63339498 (+) False LOC100750227
TU602734 other upstream 1682988 63032931 ~ 63198734 (+) False G532237
TU605418 other downstream 229144 65113280 ~ 65117956 (+) True G534653
TU605427 other downstream 272373 65156509 ~ 65161330 (+) True LOC110526356
TU605959 other downstream 963487 65847623 ~ 65849441 (+) True G535150
TU607370 other downstream 1718649 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 2129084 67013220 ~ 67018653 (+) True G536995

Expression Profile