RNA id: XM_036981829.1



Basic Information


Item Value
RNA id XM_036981829.1
length 722
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC118965085
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 64897435 ~ 64898548 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATCACGCATCACTTAACTGTTGCCAATGTGTTCACAACGGTACACCCTCTGTTGGGATTTTTACCTCTACTACTCTCATTTCTTGGTCTATTTAGTATGGAAAGTAGACAACAATGGCTTACCAGACTGAAAAATGAACTTAGCAACAGTCCTCTGGTCTCAAATGTGGCTTTTGGATTTATCCTCATGGGACTAGAGAAGCTGGTGGAGCTGGAGTTTGAGTGTCCTTGCAATCCTAAATGGAACGGAGTGTTTTCATCTGCCTTCTTCATCATTCCTGCTGTCATGGCCTTCACGTTGATGCTGATCATTCAAGGATGCAGGTGCGATACGTGGTGCCGGAAGACTGTGTCTTTTTCCAGTTTTGTTCCTGCAATCGTGTGGCTGATCTTGTTGTTCCTCGATGGTCAGTACTTTGCTTGTGCAATGACAGACTGGAAGGGCAGATTTGTCATAGTTGATAAAGCAGCACCGCAGAAATGGTGTGAGCcaactagtgagggagatgtcaCACCGCAAGAACTAATGCTCCGCTCACAGCAGCTATTTGTTGTGTCTCAAGTTCTAGGTATATTTCTTCTCATAATCATCTGTGTGGGACTCATAGTGTATGTGATCAGAGAGAGCTGCCAGCAGGAGTCTGAGATGCAGGATGCAGACGTAGCGGAGCTCACCGTGCTCCGGATGAGCTCTCTGAGAACCAGGACGACGTGAgaggacag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU605343 lncRNA downstream 2336 64855495 ~ 64895099 (-) False G534603
TU605354 lncRNA downstream 16831 64876906 ~ 64880604 (-) True G534612
TU605290 lncRNA downstream 55653 64795566 ~ 64841782 (-) True G534559
TU605263 lncRNA downstream 87847 64768414 ~ 64809588 (-) True G534537
TU605154 lncRNA downstream 129435 64767543 ~ 64768000 (-) True G534440
TU605379 lncRNA upstream 54972 64953520 ~ 64954960 (-) True G534626
TU605408 lncRNA upstream 79279 64977827 ~ 64978126 (-) True G534651
TU605409 lncRNA upstream 79590 64978138 ~ 64978443 (-) True G534652
TU606260 lncRNA upstream 81462 64980010 ~ 64980314 (-) True G535431
TU606365 lncRNA upstream 241361 65139909 ~ 65141886 (-) True G535528
XM_021607226.2 mRNA downstream 182321 64697204 ~ 64715114 (-) True LOC110526341
XM_021607225.2 mRNA downstream 182323 64697204 ~ 64715112 (-) False LOC110526341
XM_036980691.1 mRNA downstream 254801 64509743 ~ 64642634 (-) False LOC110526338
XM_036980692.1 mRNA downstream 254801 64509743 ~ 64642634 (-) True LOC110526338
XM_021607212.2 mRNA downstream 404570 64417864 ~ 64492865 (-) True LOC110526336
XR_002473933.2 mRNA upstream 59667 64958215 ~ 64973767 (-) False LOC110526350
XM_021607246.2 mRNA upstream 65285 64963833 ~ 64973601 (-) False LOC110526350
XM_021607245.2 mRNA upstream 65285 64963833 ~ 64973767 (-) True LOC110526350
XM_021607248.2 mRNA upstream 214730 65113278 ~ 65131447 (-) False LOC110526352
XM_021607249.2 mRNA upstream 214730 65113278 ~ 65131447 (-) False LOC110526352
TU605344 other downstream 11903 64855495 ~ 64885532 (-) True G534603
TU605061 other downstream 282639 64578798 ~ 64614796 (-) True G534349
TU604906 other downstream 397821 64498453 ~ 64499614 (-) True G534201
TU604146 other downstream 1071910 63823899 ~ 63825525 (-) False igdcc3
TU603463 other downstream 1907157 62985529 ~ 62990278 (-) False LOC110526310
TU606664 other upstream 725441 65623989 ~ 65625972 (-) True LOC110526365
TU607101 other upstream 1363938 66262486 ~ 66276289 (-) True G536183
TU607202 other upstream 1378654 66277202 ~ 66281619 (-) False LOC110526379
TU607649 other upstream 1601840 66500388 ~ 66505025 (-) True LOC110526387
TU607613 other upstream 1650819 66549367 ~ 66549974 (-) True G536630

Expression Profile