RNA id: XM_021607242.2


Basic Information

Item Value
RNA id XM_021607242.2
length 2620
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC110526349
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 64899801 ~ 64962147 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTGCGCATCTCTGATCCTTCAGAACTACAACCGTGGACGCTCTCACTGACATCGAAAGACCTCTTCCGCAATCCGATGAAGGAGGCTCCGTTTATGGCCCTACTACATCAGCATCCCTGACGGAGCTATCCGCCTGTCCTGGACCATTCCTTGCTGCCTTCATTTCGTTATTTTCCGGAGGACTTTACCTTTATAGCCTTCGCAGATCATTCTAAAGAACTCCGCATCCACTCTGCTATGCACCTTTAGACCAGATCTCTAATTCCCGCGATCAATATCTCATCTCCCACAATCGCCTTATCTCGTCCCTGCCTGGTCCTCTCATCGAACCCCAAGAATGCAGCCCAATGCAGTAATGTTGGCTGTGGTCCTTTTTGGAAACTTGATGCTGCATTACGTCTCGGCTCAAAACGCTGGGTTTGTGAAGTCGCCAATGTCTGAGACTAAGCTCACGCTGGACACCTTTGAGCTGTACTGCGACGTGATTGGTAACCCCACCCCCGAGATCCAGTGGTGGTACGCCGAGATCAATCGCGCCGACTCCTTCAAGCAGCTGTGGGACGGCGCCCGCAGGCGCCGCGTGTCCATCAACACGGCCTACGGCAACAACGGGGTGAGCGTGTTGGGCATCACGCGCCTCACGCTGGAGGACTCCGGGACCTACGAGTGCCGGGCCAGCAACAACCCACGGCGCAACGACCTGCGCCAAAACCCCGCCATCACCTGGATCCGAGCCCAGGCCACCATTTCTGTGCTGCAGAagcCCAAGATCAATGCGTCAGATCAGATCATCCTACCCTCGGAGACCAAAGGGCCCCCTGTCACCCTGCAGTGTAACCTGACCAACGCCCACGAAGGCCAACAAGAGAGCTTCTGGATGAAGAACGGAGTGGAGATCGCAGACACACGGAACGAGCAGAAGAACACAGAGTACATAATCAAGAAACCAAGGTCAGACGACGCAGGGGAGTACATGTGTGTTTACACGTTTGAAACGGCTCCCAACGCCAACGCCACTATTGAGGTAAAAGCGGCACCTGAGATCACGGGCCACAAGCGCAGTGACAATAAGAACGAGGGGCAGAGTGCTCTGTTGTACTGTAAGTCTGTGGGCTacccctttcccatctggacatgGCGTAAACTGGATGGCTCAAACTACATGGAAATCGATAACTCCTCTGGCCGCTTCTTCATCACCAACAAAGACAACTACACAGAGCTGAACATCGTCAACCTGAACCGCACCTCGGACCCTGGTGAATACCAGTGCAATGCTACCAACCACATTGGCACCAAGTCCATGTCGTCCATCCTGCGAGTGCGCAGCCACCTGGCACCCCTCTGGCCCTTCCTGGGGGTTCTAGCGGAGATCATCATCCTGGTGGTCATCATCGTAGTGTATGAAAAACGCAAGAGGCCAGATGATGTGTTGGACGccgcaccaacGAAAACAAATTCGACAAACAACCACAAAGACAAAAATGTGCGCCAGAGGAATACAAAATGAGAAGCTACTCGTTGCAATGACTAACTGCATATCTTGACCATATGAAGGTATCTGAGGAGGGAGCTCCAGGCAATTTTTAATGAAGcatatctcatctctctcttacgAGAAAAAACAATAACAGCGTAACACTGGCAGAAAAGAACAAGATGGCTGTCTTAAGCATGACTTATTCAGTCTTACATGAACAGTCCTGGACGGAGAGATGACTAATTCCATCACGAAAGGTGTGCACATCTTTTTTTGTGTGCTGTTTGATGTCTCTTTTATTCATTTTATCATGTCCTCCAACCAGAGGTGATCCTTTTTGTATTACATATCATGTAAAACGCATGCAAATTATTACGCAATAGGATGCCCAGAATAGACTTTGTTGTTTTCCCTCATGTCTGTATGGCTATTTTGCGTCCaaaggaattatgtttttttatgAAATTGTCCtgaactgaaaaatactgttataTTCTTAAATAACTTTGTACAGCTGATTCATTGTCATTAAACTATGTTTGATTTAGTGAAAGGAAAGTCCACTCTTAACAGCCATTATAGTGAAAATGTGATGCAAGGGATTTGATGTCTGGCAGTATTTACTTGAAAATGATTATATGAAAATTACTACTATATCTATCTAGTTATAAATAAAATgagtgtttatttttatttttcagagtaacTTAGGATGTCTTGTATATGTTGAGGTACGAGTGTTCAAACAATAGCAAATActgtatgtaaagaaaaaaatacattttatatttcccAACTTAAttcattcatttttatttttctgaaATTGTACAGCATGGCTATTATCCTATGCAATATGTATTCATATATAGATATATTGGGGGCAGTTTGTTTTTCTCAGTGAAGCTTTAATATTGTGGGATCACTTGGAAGCTGGTATAGCAAAATGCACTGCTGTAGCTGCATGACTCCTGTCCTATAAATACACCATGTATCCATGTGTATTGCAGTGCAAATGGACCTACATTAGGGTGGGAATGGAAGGAGCTACGGTATCTCTAGCCACGATAAAACATCAGACCAATAACATACGAGActaatacatttttgaaaataAAAGGCTCCaaaatacatttca

Function

GO: NA

KEGG:

id description
K22653 NPTN; neuroplastin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU605167 lncRNA upstream 94942 64785620 ~ 64804863 (+) True G534449
TU605156 lncRNA upstream 121623 64777381 ~ 64778182 (+) True LOC110526344
TU605161 lncRNA upstream 125791 64773647 ~ 64774014 (+) True G534445
TU604826 lncRNA upstream 134127 64765499 ~ 64765678 (+) True LOC110526343
TU604832 lncRNA upstream 139300 64760234 ~ 64760505 (+) True G534130
TU605235 lncRNA downstream 292 64962439 ~ 64964242 (+) True G534510
TU605255 lncRNA downstream 2155 64964302 ~ 64964542 (+) True G534530
TU605257 lncRNA downstream 5650 64967797 ~ 64968004 (+) True G534532
TU605426 lncRNA downstream 103233 65065380 ~ 65161330 (+) False LOC110526356
TU605410 lncRNA downstream 151133 65113280 ~ 65169563 (+) False G534653
XM_021607239.2 mRNA upstream 4690 64891686 ~ 64895115 (+) True LOC110526348
XM_021607237.2 mRNA upstream 15669 64881722 ~ 64884136 (+) True LOC118936302
XM_036980694.1 mRNA upstream 41620 64854976 ~ 64858185 (+) True LOC110526346
XM_021607231.2 mRNA upstream 48707 64832625 ~ 64851098 (+) False chrna5
XM_021607251.2 mRNA downstream 141077 65103224 ~ 65106320 (+) False LOC110526353
XM_021607252.2 mRNA downstream 141079 65103226 ~ 65106320 (+) True LOC110526353
XM_021607253.2 mRNA downstream 144562 65106709 ~ 65113071 (+) True dhdh.2
XR_005052196.1 mRNA downstream 177733 65139880 ~ 65161328 (+) False LOC110526356
XM_036980698.1 mRNA downstream 177734 65139881 ~ 65161328 (+) False LOC110526356
TU605171 other upstream 52701 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 123469 64769147 ~ 64776336 (+) False LOC110526344
TU603025 other upstream 1556050 63308533 ~ 63343755 (+) True G532489
TU603064 other upstream 1560307 63338236 ~ 63339498 (+) False LOC100750227
TU602734 other upstream 1701071 63032931 ~ 63198734 (+) False G532237
TU605418 other downstream 151133 65113280 ~ 65117956 (+) True G534653
TU605427 other downstream 194362 65156509 ~ 65161330 (+) True LOC110526356
TU605959 other downstream 885476 65847623 ~ 65849441 (+) True G535150
TU607370 other downstream 1640638 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 2051073 67013220 ~ 67018653 (+) True G536995

Expression Profile