RNA id: XM_021607250.2


Basic Information

Item Value
RNA id XM_021607250.2
length 2868
RNA type mRNA
GC content 0.52
exon number 12
gene id LOC110526352
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65113278 ~ 65133825 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTATAGGAGATCACCTTGAGCTTCTGGGTGTAAGAGAACTACGTCAGTCTAGCAGTTGTTCATCGATAGAAGCTGTTTTTTTTAGTGGCGTAGTCCAGGCAAAGGATGGATTCCAAAAGATAACTGTCTAGCTACCTAGTAAGAGgACTTCAAATTCTGCCATCATGCCCGGTTCAAAGTCTCAAGACATGGGCTCTGCCTTCGTCCAGACGCAGCAGCTCGGCGCTGCCATGGCCGACACCTTCCTGGAGCACATGTGCCTGCTGGACATCGACTCTGAGCCCACCACAGCCCGCAACACTGGCATCATCTGCACTATTGGGCCAGCCTCCCGCTCTGTGGACATGCTGAAGGAGATGATCAAGTCTGGGATGAACATCGCTCGCATGAACTTCTCCCATGGATCTCACGAGTACCACTGTGAGACTATTAAGAATGTGCGTGAGGCCTGTGAGAGCTTTGAGCCAGGCAGCATCCACTACCGCCCCGTGGCCATCGCTCTGGACACAAAGGGACCTGAGATCAGGACTGGACTTATCAAAGGAagtggcACATCTGAGGTGGAGCTGAAGAAGGGCAACATGATCAAGTTGACCCTGGATGATGCCTACCAGGAGAACTGTGATGAAGACAATCTGTGGCTGGACTACAAGAACATCACCAGGGTGGTGGAGCTGGGCAGCAAGATCTACATCGACGATGGACTCGTGTCCCTCCAGGTCAAGGAAATCGGTGGTGACTACCTGATATGTGAGATTGAGAATGGAGGGACCCTGGGCAGTAAGAAGGGTGTGAACCTGCCTGGTGCTGCTGTGGACCTGCCTGCTGTCTCTGAGAAGGACATCTCTGACCTGACCTTCGGCGTGGAGCAAGGAGTGGACATGGTGTTTGCCTCTTTCATCCGTAAAGCAGCCGACGTGCACGCTGTCAGGAAGGTGCTGGGAGAGAAGGGCAAGAACATCAAGATCATCAGCAAGCTGGAGAATCACGAGGGAGTGCGCAGGTTTGATGAAATCATGGAAGCTAGTGATGGCATCATGGTTGCCCGTGGTGACCTGGGAATTGAGATCCCCACAGAGAAGGTGTTCCTGGCCCAGAAGATGATGATTGGCCGCTGCAACAGAGCCGGCAAGCCAATCACCTGCGCCACACAGATGTTGGAGAGCATGATCAAGAAGCCCAGGCCCACCCGTGCTGAGGGCAGTGACGTAGCCAACGCCGTGCTGGATGGAGCTGACTGCATCATGCTGAGTGGAGAGACCGCCAAGGGAGACTACCCCCTGGAGGCTGTCCGCACACAGCACATGATCGCTCGCGAGGCAGAGGCAGCCATGTTTCATCGGCAGGTGTTCGAGGACCTGCGGCGCGCCGCACCACACTCTACCGACCCGGCCGAGGCTATCGCCATCGGCGCTGTGGAGGCCTCCTTTAAGATCTTGTCCTCTGCGTTCATTGTGCTCACTAACTCTGGAAGgTCAGCCCACCTGATCTCCAGGTACAGGCCCCGCGCCCCCATCATTGCTGTGACCCGTAACGGCCAGACCGCCCGCCAGGCCCACCTGTATCGCGGGATCTTCCCCGTCCTCTACAACAAGCCTGCCCACGACGTCTGGGCCGAGGACGTCGACCTCAGGGTCAACTTCGCCATGGAAATGGGCAAGGAGCGAGGGTTCTTCAAGGAGGGAGATGTGGTGATCGTCCTGACCGGTTGGCGCCCAGGCTCTGGCTATACCAACACCATGCGTGTGGTTGTGGTTCCTTGAATTATGACTACCCTCCTTTGCCCTTCTCACCCCTCCACTGTCTTGCCCTCCTTGTCCCTCTGCTCACCGCTCCCTGTCCCAACACCAGGGCTCAGACAGACTTGTACAGCCCACAACAAACACCTGGCCTTTTCTTCCTCCCCAAGAATAGGCCAGTGGTGGTGACTCGACCAATAGGAAATCTCCCCACTACAGTCCACCCCAGGGTTCCCCTCACATAGGTGTGCTCTGTTCGCCCCCAGTCTCCAGGGTATCTGTACGCGCCCACCAGAAACAGCTGTATTTATTCACACAAACAAAACCATGTATGATTCTTACATTCAAACCAGACTGAAAGAGCTACAACCTAGCCTGTCGGTCTGCGCGTCCCAGGCACCTCTGTTTTGAGAGGCAGGCGGGGCACACCTTAAGAGAGCCTGCTATACTGTAacttgtaaaaataaaaacacacactccAATTCCTATAACACGAACAAAATGGTGGCAACCCGACGAACAGCTCTTCTTTAAGGCCCTGTCACAGTTAAACTCTTCCCCCAAACATAGCCCCTTGTTGTGCTGTCTGTATTTGCATTGTGTTCTGTATACTTTCTCTGCACTCCCAATCTACTGTAGACAATGTTACATTCTGTATTATACTTGACTTTTGTGAAAGGTGAATTTAGATTCTGGGCATCCAATACTATATATTTTGTCTAACCATAGAAGTCCTATAATAGTTTGACAGGTTACTTTTTTTGTGTTGAATTATTCTTAGAAAGCCCTTACATTTTGGTCATAACTAAGTTGGCACTTAAGaaccactgtatgtatgtatgtatgtaagctGCTACATGGTTCTCTCAAATGAATGATGTATGAATTCAGTACTTTGAGGGTTTTTCAGAGGGCACTGTGGGAGGGGGGGGATAAAGGAATGAGTTGGACCCCTCCCCCTCAACCTCTTCTTTCCTCTTGCTCCTGTCTGTCGGTGACCTAGTGTGTATGTGTCTAAATGTCCAACTGCTTCTTTGATTGTGAGGGTAGGGTGTAACACAATGTTAACTGGTGTAATGAGTTGTCCTTTACTACTGGATTTCAATCATTAAAAGAGATGAGCACCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU606260 lncRNA downstream 132964 64980010 ~ 64980314 (-) True G535431
TU605409 lncRNA downstream 134835 64978138 ~ 64978443 (-) True G534652
TU605408 lncRNA downstream 135152 64977827 ~ 64978126 (-) True G534651
TU605379 lncRNA downstream 158318 64953520 ~ 64954960 (-) True G534626
TU605354 lncRNA downstream 232674 64876906 ~ 64880604 (-) True G534612
TU606365 lncRNA upstream 6137 65139909 ~ 65141886 (-) True G535528
TU606374 lncRNA upstream 25428 65159200 ~ 65161324 (-) False G535535
TU606375 lncRNA upstream 25428 65159200 ~ 65161324 (-) False G535535
TU606376 lncRNA upstream 25428 65159200 ~ 65161324 (-) False G535535
TU606377 lncRNA upstream 25428 65159200 ~ 65161324 (-) False G535535
XR_002473933.2 mRNA downstream 139511 64958215 ~ 64973767 (-) False LOC110526350
XM_021607245.2 mRNA downstream 139511 64963833 ~ 64973767 (-) True LOC110526350
XM_021607246.2 mRNA downstream 139677 64963833 ~ 64973601 (-) False LOC110526350
XM_036981829.1 mRNA downstream 214730 64897435 ~ 64898548 (-) True LOC118965085
XM_021607226.2 mRNA downstream 398164 64697204 ~ 64715114 (-) True LOC110526341
XM_021607266.2 mRNA upstream 391900 65525672 ~ 65546447 (-) False LOC110526361
XR_002473936.2 mRNA upstream 392789 65526561 ~ 65546448 (-) True LOC110526361
XM_036980721.1 mRNA upstream 466325 65600097 ~ 65765381 (-) False LOC110526365
XM_036980720.1 mRNA upstream 466325 65600097 ~ 65765382 (-) False LOC110526365
XM_036980722.1 mRNA upstream 466325 65600097 ~ 65765382 (-) False LOC110526365
TU605344 other downstream 227746 64855495 ~ 64885532 (-) True G534603
TU605061 other downstream 498482 64578798 ~ 64614796 (-) True G534349
TU604906 other downstream 613664 64498453 ~ 64499614 (-) True G534201
TU604146 other downstream 1287753 63823899 ~ 63825525 (-) False igdcc3
TU603463 other downstream 2123000 62985529 ~ 62990278 (-) False LOC110526310
TU606664 other upstream 490217 65623989 ~ 65625972 (-) True LOC110526365
TU607101 other upstream 1128714 66262486 ~ 66276289 (-) True G536183
TU607202 other upstream 1143430 66277202 ~ 66281619 (-) False LOC110526379
TU607649 other upstream 1366616 66500388 ~ 66505025 (-) True LOC110526387
TU607613 other upstream 1415595 66549367 ~ 66549974 (-) True G536630

Expression Profile