RNA id: XR_005052196.1


Basic Information

Item Value
RNA id XR_005052196.1
length 4303
RNA type mRNA
GC content 0.49
exon number 22
gene id LOC110526356
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65065380 ~ 65178884 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAACTAAGACGGCAGTACGAGCAGAGATCTGCAATAGATAAACACAGACATAGAGCAGCCACCGGGAAGCAGAGAGGCTGATaccgacagggagagagagggaggcagccaTTTTGGCATTTACAATTCTCACTTCTGTTTTTAagtcattttatttttatttttcattcagGGGGGACATAGCAGGGATATAAAAGCAGGTGTTCCCTTTAAGAGGGAAAGGATCAGGACCAAGGACAGcatcctccatctccatcctccatctccaGCTCCTGTATAGGTACCACAGTTTGAGAGGAAGTCCGAGTGACCAGGCCAGACTTCAACCTCAGTCCCTCCACCTACATGGAGCTCAGCTGTTATGGATGGGAGAAGCCTAACCCTGTCTGAGAAACCCCTATGAACAACAGACCCAATGGACATCAAAGGCCAGTCCTGGACTGATGAGGAATCAGATGGGGAGAATGAGTCGGAGCAGTTCCTCTATGGGATCCAGGGGAGCTGTGCTGCTGACCTGTACCGACACCCCCAACTGGATGCAGACATCGAGGCAGTGAAGGACATCTATACCGACAGTGCTGTCTCTGTCAGAGAGTATGGAACCATTGATGATGTGGACATTGACCTTCAGATTAATATCAGTTTCTTGGATgAGGAGGTGGCAACAGCCTGGAAGGTCATCCGAACAGAGCCCATCATTCTGAGACTAcgattctctctctcccagtacCTAGATGGACCGGAACCGTCAGTGGAGGTGTTCCAGCCCTCCAATAAAGAGGGCTTCAGCCTGGGCCTGCAGCTCAAGAAGATCCTGAGTACGTTCACGTCCCAGCAGTGGAAGCACCTCAGTAATGAGTTCCTGAAGGCCCAGCAGGAGAAGAGACACAGCTGGTTCAAGGCCGGGGGAACCATTAAGAAGTTCCGCGCAGGACTCAGCATCTTCTCTCCCATCCCCAAGTCCCCCAGCTACCCTCTGATCCAGGACACGGTTCTGAAGGGGAAGCTGAGTGTTCCAGAGCTGAGGGTGACCCGGCTCATGAATCGCTCCATCTCCTGCACCATGAAGAACCCCAAGGGGGAGCTGTTCAGCTACCCCCCAAACAGCCAGACTGTGGCTGTCCCGGCGGCCAGGGCCCCAGCGCAGATTACCACGAGGCAGCTGATTGAATTGTTTTTCTCATCCCAGGCGGGCGGACACTGCAAGAACATCCCTACCTTGGAGTATGGCTTCTTAGTACAGATAATGAAATACTCGGAGCAGAGGATCCCCACTCTCAATGAGTACTGTGTGGTCTGTGACGAGCAGCACGTCTTTCAGAACGGATCCATGTTGAAGCCGGCTGTGTGCACTAGAGAGCTATGTGTGTTCTCCTTCTACACTCTGGGGGTGATGTCAGGAGCAGCAGAGGAGGTGGCCACTGGAGCAGAGGTGGTGGATCTGCTGGTGGCTATGTGTCGGGCTGCTCTGGAGTCTCCTCGTAAAAGCATCATCTTTGAACCCTACCCGTCTGTGGTCGACCCCAACGACCCCAAGACTCTGGCCTTCAACCCAAAGAAGAAGAACTATGAGAGATTGCAAAAAGCACTGGACAGTGTCATGTCCATCCGCGAGATGACCCAGGGCTCATATCTGGAGATTAAGAAACAAATGGACAAACTGGACCCCCTGGCCCACCCTCTACTACAGTGgatCATATCCAGTAACAGATCCCATATCGTCAAGCTGCCTCTGAGTAGGcAACTGAAGTTCATGCACACATCCCACCAGTTCCTGTTACTCAGCAGCCCGCCTGCCAAGGAGGCACGCTTTCGCACGGCCAAGAAGCTCTACGGCAGCACCTTTGCCTTCCACTGCATGGTGCAGCCTATGGAAAGGGTATCTATCTCAGCCCCATCTCCAGCATTTCCTTTGGATACTCAGggatgGGTAAAGGACAGCACCGCATGCCCACCAAAGATGAGCTGGTGCAGCGTTACAACCGAATGAataccgttccacaggtgcagtGTCTGATGAGCCGTCCTATCCAGTCAAGGTTTCTCCAGAGCCGGAATCTAAACTGCATTGCCCTTTGTGAAGTGATCACGTCCAAGGACCTGCAGAAGCACGGCAACATCTGGGTGTGTCCTGTGTCCGACCACGTCTGCACGCGTTTCTTCTTCGTGTACGAGGATGGCCAGGTGGGAGATGCCAACATCAACACCCAGGAGCCCAAGGTGCAGAAGGAGATAATGCGTGTGATCGGCACCCAGATCTACTCCAGCTAATGGAGGCTCCCCGGTGGCCCTTGGAGGAACAGGTCTGTACTGCAGATAGACCGACAGACAGAACTATAGacataaatacagacagacattTGGGAAACACAAACTCAGACCAGATGAGGGAGGTTGAGGATCTTTACGCCTCATATCTACAATCCCTTTCCCTTTTTTCCCCTCACTTTTTATTCCTCTGCTTTCCGTTCTCCCTGTGTCTGGCTAGCATGTGTAACAGTTCCTACTCTGTGCTCCGGTGAGCCACACCTGTGGGCTAGATAGAGCTGGAAAACACAGGGATGAATGAAGGAAACCTTAGCCGGACTGGTTTGCCACACACACTCTGAGCTGAAGcgcaagagcacacacacacgcacacacacacagacacacacacacacacacacacacagacactaacacacacacacacacacttccctttcAGCCCCTGGTCTCTCATTTCCTCCTGAGCCACTGTCAAGTCTCATCCACTCTCTTTTATCAGCTGCAAATGTGAGAATCCTTTGGACTGTGTATCTATATTCATCAGTTCTCATTGTGGATAtctagaagaagaagaagaaggagtcATGTTTAGTTTATTACACCCCCCTGTGGGTGTTGAATCATGGATCTACATGCATGtagaaatgtgttattttattgtgttgtaGGCATTTTCTCAGTGATCCGTTTATTTCCTATTCTTTGACTAATGACATAAATTGACGGGCCAAGATGCAATTATCTCCCGGGTCAAAGCAGTGTTCTACCGTGCCTCGTCATGTAGTGGGTCAGTTTGTCTCCAGATAGCACAGACAGAGGGACCTGAAGTCCTCTGGTTGAGTAAAATGATTGTATGTTACACAGGACAAATCCATCACTAGTTAATGTTGTTACCAGTCTGTCAGGAGAGActagtcacagacagacacagccacAGCCTGCTCCCTCTGTAGACTAAAGGCTTTCTTGTCTTCTCCTGATGTTTCATTTAGGGAAATTAGACCGGAGAGTCAAAATTATGACAGAGAGAATACTGGTGCCCTCTAGACTGCTGAATTTGAGAGAGCATGATGCAAAACCCATAGCACTGTCGCACTGACTTGTGACTTGCTCCATAAAGTACAGTCCATCCCACTCTGAGAGACTAGGGCAGTGACCCCAGGTGAATCCATGCCCTACAGCCCGCTATCCCTCCCTACTCTGAGAGATATAATACATGAAGATATTATATGGCTATGGCCCTACCCACAGGACACTGGATGTTGTTCAAGTGCTTTACTTACATATTTATGGTTTACCTTGGGGAACGGCAACCCTGTGTATAATTTACTCTGTTTATCAATTAGTTGTATGTATGTGTGGGTTATTTGTATTTTCTGTACTATAGTACATTATACTGGACATTGCACTCATTCAACATTTGCTTAGCCCAGATAAAatgtatgttctctctctctctctctttctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcagcctgtctCAAGGTCTACCTGTCTAGTGTGTAGAAAGACAGGGAACCACCGAAAGATTTATATTTGGAGTAAAAGTGAACAAAATAACTAAATGTCCCTAATGGTAAAATGTCTTCACTCGGACATACATGCATAGTGGCGTTGGTGTTGAACATTGTAAATGTGAATATGGACCAGAGAAGAAGAAATGTACTGTTGGGAGAGAAATGGCTCTATCTGCACATGTCAAttattgtttgtagagatgaaaAGACTGGGGGAAACACCTTACCCAGCCTTCACCATCCAGTGCTCCTTCTGGCTGCGGTGTGTAGGGCTCGTTGACAGCTGATACCTATTGTCCCCCCATTAAGAGTGACTGTATTCAGATCCCTATCTGTTCTTGTCCCTCTCTGTCAGTGGTGTGTTCATGATGGTGACGACGATGGAAAGATATGATGAAAGGAATGAATAAAGATTTTGCACAATTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU605416 lncRNA upstream 6034 65113280 ~ 65133846 (+) False G534653
TU605257 lncRNA upstream 171876 64967797 ~ 64968004 (+) True G534532
TU605255 lncRNA upstream 175338 64964302 ~ 64964542 (+) True G534530
TU605235 lncRNA upstream 175638 64962439 ~ 64964242 (+) True G534510
TU605234 lncRNA upstream 182111 64956530 ~ 64957769 (+) True G534509
TU605537 lncRNA downstream 12147 65173475 ~ 65173701 (+) True G534764
TU605540 lncRNA downstream 18135 65179463 ~ 65179673 (+) True G534767
TU605541 lncRNA downstream 18955 65180283 ~ 65180487 (+) True G534768
TU605542 lncRNA downstream 19183 65180511 ~ 65180847 (+) True G534769
TU605543 lncRNA downstream 21687 65183015 ~ 65183379 (+) True G534770
XM_021607253.2 mRNA upstream 26809 65106709 ~ 65113071 (+) True dhdh.2
XM_021607251.2 mRNA upstream 33560 65103224 ~ 65106320 (+) False LOC110526353
XM_021607252.2 mRNA upstream 33560 65103226 ~ 65106320 (+) True LOC110526353
XM_021607244.2 mRNA upstream 177733 64899802 ~ 64962147 (+) False LOC110526349
XM_036980700.1 mRNA downstream 32331 65193659 ~ 65368577 (+) False LOC110526357
XM_036980701.1 mRNA downstream 32331 65193659 ~ 65368577 (+) False LOC110526357
XM_036980702.1 mRNA downstream 32331 65193659 ~ 65368577 (+) False LOC110526357
XM_036980703.1 mRNA downstream 32331 65193659 ~ 65368577 (+) False LOC110526357
XM_036980704.1 mRNA downstream 32331 65193659 ~ 65368577 (+) False LOC110526357
TU605418 other upstream 21924 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 292776 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 363544 64769147 ~ 64776336 (+) False LOC110526344
TU603025 other upstream 1796125 63308533 ~ 63343755 (+) True G532489
TU603064 other upstream 1800382 63338236 ~ 63339498 (+) False LOC100750227
TU605959 other downstream 686295 65847623 ~ 65849441 (+) True G535150
TU607370 other downstream 1441457 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 1851892 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 1942978 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 1943083 67104411 ~ 67104862 (+) False G537029

Expression Profile