RNA id: XM_036980707.1


Basic Information

Item Value
RNA id XM_036980707.1
length 10122
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC110526357
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65193659 ~ 65368577 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGACACAGGGAGAAAGAAACAGATTGAGAACGGGTTAGAGGAAtgaaaatacatcaaacataAATAAAGCGAAATCAAAGCAAAAGGATAGattgagagaaaggagaaagaagaagagagaaactgTGTAAAAAGGgagaaggacagggagagagaaagaagatacAAATAAAGTAGGGGGAGTTTGCAGTTGacttgagagagagggaaagggagaaagggagagagagagagcgagagagagaccagccGCCGGCCCATTTAGGAAAGATGGCTACAGTCACTGCAAACGGAGTGCAGCAAGAGAATGGATTCAGCACCACGAACAGCGCCGGCAGGATGAACGGACTCATGATCGGTCAGAACACCATTCCAATGAAGGACCACGACGCCATCAAGCTGTTTATCGGACAGATTCCCAGAAACCTGGAGGAGAAAGATCTGAAGCCCCTTTTTGAGGAATTCGGAAAGATATACGAACTCACTGTGCTGAAAGACAGGTTTACTGGAATGCATAAAGGATGTGCCTTTTTAACATACTGCGCCAGAGAGTCAGCACTGAAGGCCCAGAGCGCCCTCCATGAACAGAAGACTCTGCCAGGGaTGAACCGGCCCATCCAGGTGAAGCCAGCCGACAGCGAAGGACGAGGAGAAGACAGGAAGCTGTTTGTGGGGATGCTTGGGAAGCAGCAGAGCGAGGAGGACGTCCGGCGGCTCTTTGAGACCTTCGGCCAGATCGAGGAGTGCACCGTCCTGAGAGGGCCTGATGGGGCCAGTAAGGGCTGTGCCTTTGTCAAGTTCTCCAGCCACGCAGAAGCACAGGCGGCCATCAACAGCCTGCACGGCGGACAGACCATGCCATGTGGGTATCCCCAGGGGGCGTCCTCCAGCCTGGTGGTGAAGTTTGCCGACACGGACAAGGAGCGGACCCTGCGTAGGATGCATCAGATGGCGGGCCAGCTCGGCATCTTCAGCCCCATGACCATCCAGTTTGGGGCCTATGGCGCCTACTCTCACGCTATGATGCAACAGCAAGCAGCGCTAATGGCGGCGACCCAGAACTCGTATCTGAACCCCATGGCAGCCATCGCTGCGGCACAAATGCAGCAAATGGCAGCTTTCAATGTCAACGGTCTGGTGGCTGCCCCAATGACACCCTCCTCAGGCACCAGCACGCCGCCGGGTATCAATGCCACGGCCTTGCCCAGCCTAGCAGCGCCCATGGGGGTCAACGGGTTCGCATCCCTCCCGCCCCAGACCAACGGTCAGCCTACCAACGAGCCAATCTACACCAATGGGATCCACCCCTACCCAGGTGAGACAGCCAATGGGATTCACCTCTACTCAGcacagAGCCCTACAGTGACTGACCCTCTCCAGCAGGCTTACGCCGGTGTGCAGCACTACGCAGCAGCCTACCCTGCCGCATACGCACCAATCAGTCAAGCGTTCCCCCAGCAACCCACCATCATCCCCCAGCAACAGAGAGAAGGGCCGGAAGGCTGCAACCTGTTTATTTACCATCTGCCCCAGGAGTTTGGAGACGCAGAATTAATGCAAATGTTCCTGCCTTTCGGCAACGTCATCTCCGCCAAAGTCTTCGTGGACCGGGCGACCAATCAAAGCAAGTGTTTTGGCTTTGTGAGCTTCGATAACCCATCCAGTGCCCAGGCGGCTATCCAGGCCATGAATGGTTTTCAGATAGGCATGAAGCGGCTGAAGGTGCAGCTGAAGCGGCCAAAGGATGCCAACCGACCTTACTGACCCCTCTGCCGTCCACATCCAGgaTGAAGGGCCACAACACCTTATTTCCACAAGTGCAGTATAAAGTACAAAGACTTCTTGCTCTGCTACATATCATGAAAGAAGGGTGGTCCCTTGATTCTGCTGGAAGAATAGCTGGAGAAGATTGGGTGACTGAGGAGGAGAAAGAACCCGGagattcttgtttgtttttttagcaAATGCCTCTTTTTTTCCCTGTTTTGCTTTGGCGTCTGTGGAAGAGGATTTTTTGCAGAGACCAACTTTTTGCTGCTGTTTTTTAGAGAAGATGGAAAACCTTTATAGACACATTATGCTCAAAGCATGCAAACTGACACcggtacatatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccagcctgcTGCCATTTTGGTTTTCGTGCCTACACAGGTGATGTGCTCTGTGACAGGGCGAGCTCtgaggaaagaagaagagaaatggAGAATCCAGGAGAATTTACATGCATCATTCCTTAGGAAATAGGGACCAAAGGACTTAACGCTTTTTAaaagaatataaatatatacatatatatatatatatatatatatttaaaaaactctTACCTTGTAGCTGCAAGTATTACAATTTAACAGTAgtcaaaataaataattaaatcaatATCCAGTGGCCTAAGTAAGAATAAAAAGATAAAGGAAATAATGTATACATTGAAAAAAAGACAAGGAAACGTAGTAAAGGGGCTGATTATTATGTTCTGGTTGCTGTTTTGCCCCCAGTTAGTAGATTAGAAAATGTAGAATACTAGAAAAGTAGATTTGCTCTTTTttgctgttgtttttttttttttaagaaaaaaatacTTGAACTTGTAAAGTAGGGGAGGGATGAAAAAGATAAAATTATTCATTTTGTCTGTCCCGTCCCAGTGGGCTTTGGGGCATTGGGGTCTCTCTCTTGGATGTGACGGTCAGGCCGCTGGATATGTCCCTCTTCATGGTGTGCAACTCACTCACAGCACTATCTGACAGCTATAAAGGAACTGTTTTTCAGAAGAGGGGGAAAAAGAAGAGAAAAGACAGATGGACCTTCCTAGTGTCTGTGCTGGACAGGGTGCACATATGAGAGGCTTATTTCCCACAAGCCTTTGTGTTCAAGCGACAATCCACTGTAAAAACCAAGCAAATCGGACATGGTGTGTTCTTTTCTTTTGAGCTTTTTTATTACACAGGGAGTGTGCTATTATAAAACGTATTAAAGAAATGCTTAAAGAAAAGCTTCTGCAAACGAGATGGACTAATGGACAAAAATTAAGGCAAGCAGAGAAGAAAATGATTGAGTTGATAGCTACTGAACCTGCCAAAAGAGTGGACTCAACAGTATAACAATGAATTGGCTCTCATGGTGTttgagtaaaataaaaaaatagaccCATTAAAAATAACCACTTTATAGGcaagagggagaacgagagagagagagagagagagagagagagagagagagagagagaggccagagataTTTATGTCCGCTGAAGCCGTTCTGAAGCTCTGGTGAGATTGAGAAACATCGCCTCACCCCCACGGCTGCAGAACAGATACAAGCAGAACTTGCTCTGAAAGACACACAAGATTTATGGATGGCCAAACAGTGGAAGCTTTTAGAGCTCATTTAGCTGTGTCGTATATAATGTACATGCCACTGTTAACATGTCCCCTCCCTGACCTGCTTTTTTTTTCAAATATTATATAATGAGCCTGTGGAAAAACCTACCTATCCGTCTCAACCTAACCTAACACAGTCTGAATTACAGCCATACAACCGCCATCATTCAGCTCCTCCCTGCCAATCCATGCCTAGCAGATCACAGCTCTGAACTCTTAACTTGCCAGGCTTTTAGTTAGTGTCTATGAGCCGTTTATTTTGTGGTGGATGCAGCTGGCCCCGCTATATGAAAACCAGATCAATATGTTTGCGTTGAGTCTCGAGGAAGGATAAGATTGCAAGTCATTCACTGTCCACACTTCCTCAAGTTCTCTCAGTAGAACACCAGCTCTCCCCcagctctccccctccctccctccctcccaactcTCTGAGAGCTGACTGAAGGCATacagagggggaggcagagctggacagggaagagaaggcgagaggagagtgggagaagtCAACAGCCGAACCCTGATCTCTGAGTCCTACTCCACACCAACATGTCCAACCTTGTCTTTTCTTATCCTTCAAAGTGATGCTCCTTGGAATTATCCCCCGGGGGACCAAATCCATGCAATCAAAagccacaacccccccccccccccccccctcaacaccACCACCTTGCCAAACACCATGTATCTGTGCTGCCTAGCTCTTTGGGAATGGGATTGAAGGGTTGATAAGGAATCACTTGGCATGTATTAGGTACCTGCTGCCTTCTGTCCAGTCTGTCTCTGTTTACCTCTGGGACTTGCTCTCCAAAGCAGAGCGGACGCATTCCAAGTCACTGACTGAAagccctgcctgcctgcatcaCACAAGACACATCTACAGTACAATGACTTTCGTTGTCTTTCTCCCAGCTGCTTAAAGACAATACCATGCCACTCTTTTCTGTGAGCGAAAAGATCTTGGATTTGTCTTGATTTGTATCCTTGCTTTCACCATACCACACTACTGTAATGAATGTTAGCTTCTGACTTTGTGTTTGTGTTCCTCTGCTATAAATAGACACTGTTCTGTTCCATCATGCCTTCCAGAACCCCAACCTAGCTGTTCATAGCCTGGTTCAACCAGACTGAACTCTGCACTCAAAAATGGGGGGTTCAGTCTGGTTTTACCAGGCTATGCTGTTCAGCTGTTTCCCTGGAACAATGTTTCAGACCAACTTGCAGTTCAGTGTTTGGCTTCAGTCGCCTTCGATGATCTCTTCCTCCGTATTAGACATGCTATTTCACCTTTCCCTCTAATCACGTTGTAATAGTGAGGCTCTATACATTAACACCAACCAAGTGAAAAGTCATCTGCATAATCACCTGGACCAAATTACAGTGGGGATGGTCCCTTGAATGCTCTGTGATGACAGAAGGTAGATTAGAGAGAATTATGTTTGTAGCGGCTCCCTGGCAAGGATGCCGACAGCTGACCTGGCACCGATATCACCGCAGCCGTATTTATGATGGAGATGGGATCCAGGAAGATGGATAAAACCCTCCATATCATAGCTACTCTGGCTATTAATGTTGGATATTTGATTGGCGTGGGTATAGATTATGTTGAAAATTAGGCAAAATAGACTAGGTTTGAAATATTTCTCCAGGTATAAAAGCTACTGAACAATAGCAGGTTGAAATGGGTAGCAGACAACCAACTAGTTCGTTGAAAAACCCTTAGTTCCTCCGTTGCAGCTGCCTGCCGGGTGGCCCATGTTATTGTACATCAGCTTTCAGCACATAATTGTCTCAACAATCGCCTCAGAAGCCGCCATTGTCCACAAAACAACCTGCTCTAAACATTTTGCATTTGTCACGGCAGTATTACAGTCGGGACACCTGCAAAGCACAGAATATTGTTCAGAACTGGAGGAACAATATTGGTGAAGCACAGTAGTTATTTTGAATCAAAATGACGCCCGTTGAAAAAAACAGTGCCAGCTTTGGTCGTGTGTTGTCTCAGCTTGCCTTCAAAAACACAGTAAAAACACTCAGCCTTTAGTTGTTATGAAGTCAGCAGAACATGTAGGAACTAGGAAGCAACAAGAGTTAATGTGAAGTAGGTCAATATCAATGCATGTTCTTCACAGCAGCCATGTTGTGCTCCTTATTTACGTAATGCTGAATTAATCAATAGGAAACCTAATGTTCCGTGAGCGATGAAATCTCCTATGCTTGTCTCTCTGCCGCTTCAAAAGCAACTCCTGCAAGACTAGTCCCATTAGCCTCCCCACGAGCCCTCTGATGGCTCCTACACCAGATATATGCTGCACACCCCTACAGTCAACTTAGAGCAGGGTTAGGTTCAGCCTAGGTCCAATCCCCTGCCCAGTCTTATATTCCCTGCTTGGCTAACGTGCTACGCTCGTATAGCCTTTCTGCTGCACCAGGGAGCTGCAGAAACGTGCTTGGGAAGGCTAGATTAGACCATGTTAAATCAGGGAGCTGTTAGAACCAGGGTCCTCTTATTGCTCTTCCACACAGGGGAGGAAGGTTATTAGTGtgacatgcagtgaaaacagaaATAGCTGTAGCGAAGCCAGGCTCTGGAACAAAGAAAATGAGAAGTGGGTTTTATTCCTTCTCTTACTGACTCCAGAAGTCTGCCAGCTCAGCCCATCTCAGCCCATCTCAGCCCAGCTCAGCCCATCTCAGCCCATCTCAGCCCATCTCAGCCCAGCTCAGCCCATCTCAGCCCATCTCAGCCCAGCTCAGCCCATCTCAGCCCATCTTAGCGCAGCTCTGGCCCTGTCTGGCCTTTAGTCAAGAATGTTAACTTAGGAGTGACTCGCCTTACGCAGGACTGAAAGCCACCCACTCATGTTAAGATGAGAATATTTAGATTGACATTATAGGTTATTGCTATTGTTAGTTCGACTCACTTTATGAGTCTGTTTGgaaatacagtaacagtcaaaagttcggATACacctttctttatttttactatatgtgttaattcatagtttatatcttcactattattctacaatgtagaaaatagtaaaaataaagaaaaacccttgaatgagtaggtgtgtccaaacttttgactggtactgtatgtaaaatataaTATAACAAAAACATATTTATGGTCATGTGGTCACTGTAATGCCTGACCTTCTCATGTAACATTAGCACCTGTGAGGCAGTTATTCACATTTCTTAACCTCTGGTTATTCTGCCTCCTCTACTGGCTCTAGATATAATGCCTTCCTAGTTTGCATTCCATAAAGTCTGTCCTCATGAGGAGTTAGAAACCTCAGAGCTCCGAGGCTGACAGAGGGGAAGGATAACCAGTCCTAAGAGCTGAAGAGGTTGACTAAGAGGCTAAGAGGCTAGATAACCAATCATCTGAGCTCTGAAGCTGGCGGATGGGTTGAATAACCAATCCTAGTGGGCGAAGAGAGATCTGCCTAGCATGTCTAGCAGACCCCAGCCCCTGGGTGTAGAGAACACTCACCCTAAAATAGCAGTGATTGTCAAGGAAAGGAAGTGAAATGTAATTGACTGAAAGTGGAGAGATAATTAAAGGAACCTGTTGGACAGGAGGGAGAAATTAATGGCTCTCATTTAATAGCTGCTTTGGGAGAAAAGGAGAGCTTTTCCGTCATCTCGCTTAGCTAACGCAAAAAGGGATTTTCGCTGTGGAAATGGGATTTTTGCTAAGAGGGGAAGTGAAGTGGGTTTTGGGGGGGCCTGGATGCTAAACTGAAACTCCACAAAGTCACCTCAATACTCAGGGCATCAGGCACTATGATGTCATGATTAGTGGAAACTTTCAGAGCCTTGCCTTCCCATGGGCCCTGCCTGCCTTGTCTGGCTGGGGAGGAATAAGAGCTGCGTATTCACCCAGAGGCACTGAGAGTATGGTGGGAGCTGGAGGAGCATGTTGGACCTCTGCCAGGGCAGCTGGAGGAGCCAGAGACACGATcacactgtcagtcagtcagtcagggggAGTGTTGTCTGTCATTGAAACATTAATGCCTTGGATCCATCAGGTCAACGTGCAATTTTAAAAGACACTAAAAGGAAGACCTTGATCCTATCATAAACAACATAAAGAGCAGTCAATCACAGAAAAGTGTGGGATCATGTTTGACAACAAAGCTGGAGATTCAAATCAAAAAATGGAGACAGAATTTTTTATTCCTTCATGTAAATAATATAACACAGAAACAAATGAGTCAGGAAGTAAGAACTGTACAGTAGAGAGGTCTGTCTATAGTAGTCGCCTGGCTGTGTGGACATTGATGTCACTATAAAACGTATCCACAGCAGTGCAGGAAATCTTTGGAGAGGGTGGGACTTTTTAACACTTTGGCCTTTTTGGTTACTGAGTAAACATGAATGAATATGCACTATACCCTCAGCTGAACACCACCCAACATAACAGGGAGAGGATAGCAGAGATCTGATTCTAGATGATTTAGTAGGGCTTCAATTCCAGCCTGGAGCAATCCATTAATTAGGTTTACACTGACACATCATGATATTTCTGACAGTTGAAAGATTGCCTGTGCACTAGCTAATTGGATTAGTCCAATTGGAGCTGATTAGACGGATAGATGTGACCTCAAATACGTGACGAGaaggcctgcccctcagtctgcTCCGTGCCGTGCAGAGGAGCAGGTGATAGTGACAGCAGCCATTAGTTCgcaagttgctagctagcttgcCACCGGGGCGGCGTCCGCCAGTCACCGCTATAATCCACAGCTCCACGGGTATGGGCGGAAGAGGGTGAGGGTTTGCCAGATTGGAGCTGAAAACACATTTCCATATGAtccaaacacagaacacaggtgtatgatgagaaagagagaggattgGGCCAGGTGAGCCGGATGCACTGCTACTAGAATGAATGACTACCCTGCAGATCTCCCTGCCTCTGTGGCCTGCCCCTGCCTCTGCTCTCTCCACGGCCAGAGTACACAGCTGCCTGCGATACTCCTGTACATATTACATAGCTTATTTTTTAATTCTGTTAAGGCTTCTTTATAGACGACCGTACAATAAATCATgttgaaaaaaaagaaagaaatagtTAATATATTTCACTGACTACGAGAAGGAAACTATGAAATAATTTATCAAAAACAGTAGAGAGAAAACATTTTTATTTCTTGTATATTGAAGCGCTGATGTTAAAATGGATTTTATATTCATGTTGGTAAAATGGTTCTTTTTTTACATTCTCttatgttttctgttttgttaTCTGCTGAAGCTGGGATGGACCCATTGTCTCAAGGTTTATTCTGATATGCTTTGAAGATACATGTTGAAGGGACATTTTGCTACACAATCCCCATATGGAATTACATGTAAATGGGCAAGTTTAAAGATATGTTGTTGACAGAAAGCTCTTACATTCAGTACAGGAATGAAGAAACTGGACTGATAAAAGGTCATGTGGATTCATAAAGATGACAACATTTGTTGTCAGATTAGTTTTGAAAAATAAGCTGTCATTTAACATGACCATTGTCTTTCAGCCATACATTTCTCTTTTGTTTGATTATTTCTTTCATCTTGAATTCATTTTATGTCTTGAAAAAGAATCAGTGACATCTCTTTTATTTTCATCTTGTCTGCATGCGGGAATTTTCTCTCAGAGATCATTTCTGAAGAGCTATTTCAACATTACTGGTCCATCTTGTATATATAATAACTGTGGTTGACTCCAACACCACTGAAGAAAATGTGCCAATAACAGATTGAACGTTCCACTACACTGTTTTGGTCAAGTCAGGTCAACCCTGTGGCCTTGACACCAAACTGATCAAAAGAGGGAAGTCTGCCTTAAAACACATTCATTCTCTCTGACGGTACTACCTTCAAAAACGTAGCACATACATTGTATTCTGGGGATGCCAATGCTAGTTCTTTTCCATTGTTCATAAACATGCTCTGGTTTTTCCTTGCAGAGATGAGATtctgtttaattgaaatgcagcTGTCAGTTGTAAAGATTGCCTTGTGTCAGTTTTGCctcaatcccacttctgacaccaataaGGACGGGATCATACAGTATAGTTACATTTCCATCGGTTACATGGACCAAATTTTATCACATGAAACCAATAGAGCAGAGTTTCCCTAACAAAACATGAAATGAGAGCCTTTGTGCAACCATTCAGATATAAAGGAAAGTGAAAATCATCCACTGTACTTTGCTTCATGAGACATTACATTCCCAGCTTCTCTCTCGCATTTCATCCACTTGATTTTACTTCTGTCAGACAAATAAAACATGTCATTTTATGTCATTTATCATAATTTATTTTAGGCACTTATTAGTTCATTTATTTATAATATTTTAGTTGAATGATATAATTGTACATCTTTCTCATTTTTACTTGAACAAAATCAGTTTATTATCTTTATTTTCTCAAAACAGAACTGTAATTTGACTTAGTGTTGGCACGGGTCTGTTTTTCCCTAATTCGGGGTGGTTCCTCCCATAGTGCTCCTGAACTGTAGTTCTCTAGTTCATTATATTCTGCTTAGACTAAAATAAAGCACAGTCCTGTAGAAGATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU605544 lncRNA upstream 8683 65184766 ~ 65184976 (+) True G534771
TU605543 lncRNA upstream 10280 65183015 ~ 65183379 (+) True G534770
TU605542 lncRNA upstream 12812 65180511 ~ 65180847 (+) True G534769
TU605541 lncRNA upstream 13172 65180283 ~ 65180487 (+) True G534768
TU605540 lncRNA upstream 13986 65179463 ~ 65179673 (+) True G534767
TU605647 lncRNA downstream 1439 65370016 ~ 65370283 (+) True G534866
TU605651 lncRNA downstream 6994 65375571 ~ 65376381 (+) False G534870
TU605653 lncRNA downstream 6994 65375571 ~ 65376183 (+) True G534870
TU605681 lncRNA downstream 43795 65412372 ~ 65412985 (+) True G534894
TU605703 lncRNA downstream 71922 65440499 ~ 65440976 (+) False LOC110526360
XM_036980697.1 mRNA upstream 14775 65139881 ~ 65178884 (+) False LOC110526356
XR_005052196.1 mRNA upstream 32331 65139880 ~ 65161328 (+) False LOC110526356
XM_036980698.1 mRNA upstream 32331 65139881 ~ 65161328 (+) False LOC110526356
XM_036980699.1 mRNA upstream 32331 65139881 ~ 65161328 (+) False LOC110526356
XM_036980696.1 mRNA upstream 32331 65139882 ~ 65161328 (+) False LOC110526356
XM_036980718.1 mRNA downstream 35031 65403608 ~ 65407275 (+) True LOC110526358
XM_021607264.2 mRNA downstream 45712 65414289 ~ 65430400 (+) True LOC110526359
XM_021607265.2 mRNA downstream 65834 65434411 ~ 65440898 (+) False LOC110526360
XM_021607268.2 mRNA downstream 72515 65441092 ~ 65521598 (+) False LOC110526363
XM_021607267.2 mRNA downstream 72519 65441096 ~ 65521598 (+) True LOC110526363
TU605427 other upstream 32329 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 75703 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 346555 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 417323 64769147 ~ 64776336 (+) False LOC110526344
TU603064 other upstream 1854161 63338236 ~ 63339498 (+) False LOC100750227
TU605959 other downstream 479046 65847623 ~ 65849441 (+) True G535150
TU607370 other downstream 1234208 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 1644643 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 1735729 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 1735834 67104411 ~ 67104862 (+) False G537029

Expression Profile