RNA id: XM_036980718.1


Basic Information

Item Value
RNA id XM_036980718.1
length 3668
RNA type mRNA
GC content 0.44
exon number 1
gene id LOC110526358
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65403608 ~ 65407275 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTGAAGCAGCTCCTGTCCCTTACGTCTCTTTGTGGGGAAACAGAGGGCACACTTCCTAGAGCATAactggagacagagacacagagttcCAGGCAGGACGCCCAGGGTTCCAGCCTACAGCCACTCCTGGCACAGCCCTGAGGGGGACAGCTCCCACAGAGCACCTTGGCCAAGAGGTCCACGAAAGGAGAAGAGACGCTAATCAACTGGACCGTCCCAGAAAGTGAGATGAGAGTTGATGATATGAATGATGTGAATCCAACTGATCAATGTGGGATCTGAACCCTAAGTGAGAGGTGTATTGAGTGTGTTGTATAAAGTAGCAGTTCTCTTGAAAAGTTAGACTGAAGCATCGAAGTATCCAGGTTACAAGGATAAAAGCTCATCgagagaaaacaagagaaagGACACTTCAGCTGAGAATGTATGCATTTTCAAGGTTCTTTTTTACGTCTTGAATTGTCCCATTTGTATTCTTAATTCACCACCCAGCGTTTATCTTATTTTTGCAGCTGTCTGTAAAGCAGCATGAAAAGACTCCATTGAAAGCACTTTCTGCAAGCCGGATAATATTCCTTTCTAAAGCCTTGAAACTTTCGCAGACGTCTACAGAAAAAAGAAACCTATAACGAGAATAAGAAAACAATGCTGTGCTGGATCCCATATGAGTACGAGTCGCTGACTGGACTTTTATGATTGGAGAAGATCCAGGAGTGAAGAGATGTATTCCGACTGTGGAGTTGGAGTGGCCAGCATTCAAAGACAGTATCAGGTCAGGGACTCTGTCAGACCATACACCGGACCTGGAGGGAATACACAGGTCCCAATGGAAACCGGTGTGACCCCAGCTAGGTGCCCAATATATCAGGTTCAGCCTTACAGTGGGCAGCCCTCCTGCACTGTCAACAGTGTTTCCAACACACAGCACACTCCGGTGCCTACACATCTAACTCCACCTCCCGCCGCACTTAAACCGGGCCAGGATGGGTTCAAGAAGGTGTGTCGCACAGAGGAGGCCAGCCCGTGCCCCTTCCCAGGATTGGCCTCAGGAGTGCTGGAGATGCGTGTCAAGGAGGGCAGTAAGATCCGTAACCTCATGGGTTTTGCCATGGCTCGCATGCAGGGGGATGTCAGTGGTGTTGGGGTTAGTGGAGGCGGTGGCCTGAGGCAGGTTGTTTTCTCTGGGTCAGGTCGTGCCGTCACCAAGACCATCACATGCGCTGAGATCATGAAGAGAAAAGTGGGGTCTCTGCACCAGCTGACCAAGCTGCGCTACAAGGGTGTGAGGGAGGTGTGGGAGAGCAAAGAAGGGGGGGCATCGGAGATGACTGTTCACAGGACCGTCCCCTCCATCAGCATCCTTTTGTCCAAAGACCCCCTGGACCCGCAGGAGCCCGGCTACCAGCCCCCTGAGACCCTCAGTGCTCTCTGGGAGGACAGAGACGGTGTGGATGCCCTACAGACAGCCAGCAAGAGACCTCTTGGTCTGTCCCCATACAGTAGTTTCCCTGACTCTAAGAGAGTGTGTCTGAGTCTGGACGAGGGGACTCTGGCTCTGTCCACCCccctggctaactgactgactgaactggtATCAAACAGTCGAGTGGGAAGGATCAGAGGAGTTCATTCTGCACTGCCCTCCACTCAAGCACAGTGCTGAAACAATCAGAACATTCACTCAGACAGAACCGTGCTTTCTGAGGAGAACTGAGCACCATGCCCACCCCATCCTCCAGAGGTCAGTCAAAATAGGACCTGAAAGCTTGTCTTTGTAGATAAAACATTTATTGAACCCATTTCTCAGCACAATCAATCATTCGCCTTTGTGCCCAGAAATACTTAATGTCATCATACTATATGTCACACTGTAAAAGCTTAGACATGACAGCACACTAATCACATTTTAAATCatcaacacaacaaaacacagagcGACCAATCACCCAAGATCCCAGATTTCTGCTTTCAGTAGACTGACAATACGTTTTGAACATTGTCGTTCTGTTTTCCTAATTATATCCTACAACTGCAAATCTGTTCAAATGCACAAGGTAGGTCCACAATATTGTAATGAATACACAGAATATCTACACTCCCCTACGTATATATTTGGACAGGGAAGCTAGCATGTTTCATTTGGCTCTACAcgccagcattttggatttgagatcaaatgtttcatatgatgCAACAATAGAGTATGTCAccttttaatttgagggtattttcatacatatccgttctaccatttagaaatgaatgcactttatgcatctagtccccccatttgaaggtgtcataagtgTTTTAACAAAGGCACTTACAATAGTCTACATTttatacactataacacaataagtgaatttgtccaaatacttatggcaccttcaaatggggggacaaTATACATAAAACGCATTCATTTCTAAACTATCCATAATATGACAAATGTATCATGTTTTCAAATATCCAAACATTCAAATAAACTATATGCAGGAAAAGCCTTTTTTTGTGTATTTCTATCCCTCAGACTTGCCTATAGTACTGTACAAAGTCCAGATTGAAAAGGAAATCACAGCATGCTGATGTGTTGATAAGAGTAACGGGAGTGAAATTTGTCTAAGAGACAGCTGATTTAATGACATGGCCCCCGATAAGACGCAGCTCCAGAACCAAGCAGCCTGACAGATGCTGGGGGCTGAAATACAGGGACAGATTATCATTAAGATTACAACACTACATTGCGGCACACTAGAGAAAAGGATCAAAACTAGGCTTGATATAACTAAACACAGTCAGTGTCCCACCAGAACATGAAACCATAGCAGCAGACTCAACTCCATACCATTACTACAGTGCTAGGGTTCACGTAGAGGATATTGTATGCAGTGTttgggagtagtgaactacatgtaatTCAACAAGTAATTTCATTACATTTGTTAGTGGAACTCAATTCAAatcttggtagtgttttcagtagttaattaccTTTTAGAGGTGTAGCTAACGAACTACACACAAAGAAAATATTGGTGAAGTAGGCAAGAATTTCCTCTCTTTTACggcatcagacctgcctaattctcacttgtAACAGTTTTTGTGTTgaataggctaaattacacatgATGTTAAATACGATCTTTGGgtatttgcaaaacattttggaaccGTATCAACAGTGggctaatgaaacaaataccaaaatatcatTTTTGAGAGGTATTTTTCTTTAACATCGGACTCCAGAGTGATATGTTATTGCAATTTGTAGTATGACATTTCAGATATGATCATTTAGTTTGGATGTTTTAAAAAAGATAACTTTAGATTCATTCCACCTTAAAAAAGCATAAGAAACACGATTGATCATTTATTTTCATCATGAGCAAAAGCTATTGGTTTTCTacccaaagttgcaaagaaaatgtttatttaaacaaGCAAAATGGATAAAAGGGTGTGGCGGCAGTAGCAGGAACAGTGGCATCTAGTGGGCAAAACGTGGTATTTTCACACTAGCTTATAGTAAATAACGCAAGCGACTTCAATGGCTAATtacgtagctcattcacagccatataaggagtcattggcatgaggcggttttaaaaaatgcggcacttcctgattggatttttatctgggtttcgcctgtaa

Function

GO: NA

KEGG:

id description
K14525 RPP25; ribonucleases P/MRP protein subunit RPP25

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU605651 lncRNA upstream 27227 65375571 ~ 65376381 (+) False G534870
TU605653 lncRNA upstream 27425 65375571 ~ 65376183 (+) True G534870
TU605647 lncRNA upstream 33325 65370016 ~ 65370283 (+) True G534866
TU605548 lncRNA upstream 35031 65362672 ~ 65368577 (+) False LOC110526357
TU605551 lncRNA upstream 35031 65365022 ~ 65368577 (+) True LOC110526357
TU605681 lncRNA downstream 5097 65412372 ~ 65412985 (+) True G534894
TU605703 lncRNA downstream 33224 65440499 ~ 65440976 (+) False LOC110526360
TU605704 lncRNA downstream 33224 65440499 ~ 65440869 (+) True LOC110526360
TU605709 lncRNA downstream 42217 65449492 ~ 65449693 (+) True G534920
TU605710 lncRNA downstream 42500 65449775 ~ 65450022 (+) True G534921
XM_036980700.1 mRNA upstream 35031 65193659 ~ 65368577 (+) False LOC110526357
XM_036980701.1 mRNA upstream 35031 65193659 ~ 65368577 (+) False LOC110526357
XM_036980702.1 mRNA upstream 35031 65193659 ~ 65368577 (+) False LOC110526357
XM_036980703.1 mRNA upstream 35031 65193659 ~ 65368577 (+) False LOC110526357
XM_036980704.1 mRNA upstream 35031 65193659 ~ 65368577 (+) False LOC110526357
XM_021607264.2 mRNA downstream 7014 65414289 ~ 65430400 (+) True LOC110526359
XM_021607265.2 mRNA downstream 27136 65434411 ~ 65440898 (+) False LOC110526360
XM_021607268.2 mRNA downstream 33817 65441092 ~ 65521598 (+) False LOC110526363
XM_021607267.2 mRNA downstream 33821 65441096 ~ 65521598 (+) True LOC110526363
XM_021607271.2 mRNA downstream 167794 65575069 ~ 65580465 (+) True LOC110526364
TU605427 other upstream 242278 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 285652 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 556504 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 627272 64769147 ~ 64776336 (+) False LOC110526344
TU603064 other upstream 2064110 63338236 ~ 63339498 (+) False LOC100750227
TU605959 other downstream 440348 65847623 ~ 65849441 (+) True G535150
TU607370 other downstream 1195510 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 1605945 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 1697031 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 1697136 67104411 ~ 67104862 (+) False G537029

Expression Profile