RNA id: XM_021607265.2


Basic Information

Item Value
RNA id XM_021607265.2
length 2678
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC110526360
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65434411 ~ 65440976 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTAGGGATGAAGGAAGGACGGTGAAAGTAGTCTAAGGCTTCTGTTGACAGGAAGCGGAAGTGGTCCTTAGACTAGCTAGCAGGAGTAAAAGACAGCAGCGATAAGACGTCCTTTCGTGGATAGTTGGAAATACAGTCAACATGCCTGTTTTAGCGTATAAAGCGTGAACATTCCCACCAACATGAACAACACTATGGAGGAACAGGAGAGGGATACTCTCCTTGCTGCAGTCCCCGAGTCCCAAGTTTTGACGCCGGGTCCTGGCACTGGCAGCAGCTCAAGACCAAGGGCTACAGATGGGGGCATCAGACCTTTGGAGAAGAGGGGACCCTACATCATGTCCAAAGCCTCAGCCATTCACATGAAACTACagaaacacagagaaatgGCCCGCAAAGCAATGAAGAAAAATGGCCTTACCTCAGGGGGTCCAGTCATGCAACAGCCCAGGCAAGGAGGAAagagAAGTGTGAAGTTCAACAAAGGTTATGCCGCTTTGACTCAGCACGCTGAAGATACACTGGTAGCATTGGAATCAGACAGTGATGATGAGCTAGATGTTGAGCAGTATTCCTCAGGATACTCTTCAGCTGAGGTGCACCCAGACCTGAGCAGGCAGCTGCTGCAGGATGGATACCGGCTGGATGAGATCCCTGACGACGAGGACCTGGACCTCATTCCCCCTAAAGCCATGGGTTCCTCAGCCTGCTGCTGCGCTGAGGACCCGTCGTGCTCCGTGCAGTGAGGAGGGCACTTAGTGCTGTGACCTGGCTGACCCTGCAGCTCTGTGTTTAAAGACTGGACCTCTGTTACCCTGACCTTAGCCACTGTTTAAGTCGAGCAAGGCCTCCCGTTACCCAAACCCTACCACTGTCTAAGCATGGAACCCCCCTAACACTTTAAATGGCTAGCCACTGTTTTTGCAGTGCTCTCTACACCCTAACTAACCTTAAGCATGGACTGAAGTCATCCAAAGCCTTAGCCACTGTCCAAGCAGGGCTCTCTGTCACCCCAAAGGTTGACCTCTGTGTTATTTTGGAACTAGATTAAATGCTAACCACGTTGCATCCCCTCTCAATAGACAGGTGCAGGGTGATTCATCTCTAGACATGCACTACACTCATTCACCTGATGGAGAAGGTCACTGTCTTGTTGTCCTCTTTGACATATCACTCCCAGGTCTATTTAAACATATAACATTTATATGCAAGGTAATATGCATACAGCAAATGTCCTAGAGCGGTTTGAAGGCTAAAGCTTTTTCTGCAAGCTTGTCTTGCTCCAATTCACTTTTTTTCAAAGTAAGCCCTTTGAAAACAAACCTGAACATTCCATAACTATAGCTTCATTGATTTGGAATTTTTAATCCATCTTCCTAAAATTCCCTGTTTTTGTTGTAAATCCCTGGTATTAATCTTGGGTCTAACCTCAGACCCTTAGGTGTCTTTGACACTACATGGTTTACTTGTATATGAATTAATGCTTTAAAAGATATAGGGATACTAGCACTTACTCTTATGTCAGGCTGCCTACCAATGCTTTGTCCCAAAAAAGTTATGTAAAAGGGTTACAAAATGGCACTGTTTACTGTAATGTTACAGCAATGAGAACTCTGGTCAATCTTGTCCTGCGTGTTAGAAGTAACATTACAGCCCATGGTGTCACTGAGGTTAACCACTACCTCCTGACAATGCTgtacacaacaacacaataaccCACTTGATCCTCTCTGTCTACTATGTATAGTAGTTACTAGATACTCAGAGGGACATGCATATGATATCAGAAGGCGATCTAAACAGACAAGCCTGTTACATTTTGATAATTCGCTCTCTCTCGCATGTCACTCAGCAAATTGTACAGTTTCCCACCCTAATGTTAGTGTTTTGGTATCTTCTGGTTTTAAAAGCAAGCAGTACATTGAGTACACTAAACATTTTGAAGAATTCTGTCTGTGTTGTCAAGCATTAGAATGGGTGATTCTCATCACTCAAGCCCTTACATGTGTGGCTAAAGATAAGTGTGTTTGCTAGTGCAGACCTAATGTGGAAGTGTGTGTTGgtctggctgcgtttacacaagcgacccaattctgatatttttcactaattggtctttgaccaatcacatcagcttTGAAAAAGAGCTGACTGGAGAGATCTGGcatgattggtcaaaagaccaatttagtagaaagaatatcagaattgggctgcctgtttaAACGCAGCCATTGAGTGCTTGACCTGTGTCACTAGAGATCACTAAGATAAATATTGGATTCATCACCATCCGGTGCAGTCAGTAGCCAGTACACTGCACTAGCCTGTACTAGCCTGTACTATGCAACTAATGGGACAATCTGCTTCCTTATCCTAGTTAAAACAATATACCAAGTGTTACTGAGTGCTAAATGCATTAACTTGAAATATTATTATGTAAAGGGAACActatttttatttgattataaATATTGTTTTTGCTATATTCAATATAATTAATTAATATACACATGTCCTTTTGTAATTTTCTTCTGGTTTGCTGGAGGGGATGTTACACCATTGAAAGTTATTCTCACAGAATTCAGAGAGCTACCAATCTAATCTCTGTCAAATATTTGTTAAAATGTTCGCTACCTCGCTCCTGTGCTACAAATAAATATTTGTTATGTAGAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU605681 lncRNA upstream 21426 65412372 ~ 65412985 (+) True G534894
TU605651 lncRNA upstream 58030 65375571 ~ 65376381 (+) False G534870
TU605653 lncRNA upstream 58228 65375571 ~ 65376183 (+) True G534870
TU605647 lncRNA upstream 64128 65370016 ~ 65370283 (+) True G534866
TU605551 lncRNA upstream 65834 65365022 ~ 65368577 (+) True LOC110526357
TU605709 lncRNA downstream 8594 65449492 ~ 65449693 (+) True G534920
TU605710 lncRNA downstream 8877 65449775 ~ 65450022 (+) True G534921
TU605773 lncRNA downstream 143374 65584272 ~ 65584519 (+) True G534982
TU605775 lncRNA downstream 145297 65586195 ~ 65586907 (+) True G534984
TU605817 lncRNA downstream 194760 65635658 ~ 65642430 (+) True G535020
XM_021607264.2 mRNA upstream 4011 65414289 ~ 65430400 (+) True LOC110526359
XM_036980718.1 mRNA upstream 27136 65403608 ~ 65407275 (+) True LOC110526358
XM_036980715.1 mRNA upstream 65834 65193659 ~ 65368577 (+) False LOC110526357
XM_021607268.2 mRNA downstream 194 65441092 ~ 65521598 (+) False LOC110526363
XM_021607267.2 mRNA downstream 198 65441096 ~ 65521598 (+) True LOC110526363
XM_021607271.2 mRNA downstream 134171 65575069 ~ 65580465 (+) True LOC110526364
XM_021607273.2 mRNA downstream 327885 65768783 ~ 65771390 (+) True LOC110526366
XM_021607282.2 mRNA downstream 333889 65774787 ~ 65792680 (+) False LOC110526368
TU605427 other upstream 273081 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 316455 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 587307 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 658075 64769147 ~ 64776336 (+) False LOC110526344
TU603064 other upstream 2094913 63338236 ~ 63339498 (+) False LOC100750227
TU605959 other downstream 406725 65847623 ~ 65849441 (+) True G535150
TU607370 other downstream 1161887 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 1572322 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 1663408 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 1663513 67104411 ~ 67104862 (+) False G537029

Expression Profile