RNA id: XM_021607267.2


Basic Information

Item Value
RNA id XM_021607267.2
length 6698
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC110526363
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65441092 ~ 65521598 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgcctagttaaaaaaaaaacaggtaaatATTGGAAAGACAACTTGATAAAGCAGGTTGGTTGGATTAGATCAAAACTGGTCTGCTGGTTTATCCTTTCGagtaagacctagacaaccaggtaaggggagttctttactacatcattccataATCAAAAACacgggaggagcgaaaacccacagCCAGTCGACGCTCTGTGGAATAAATAGATCGTTAACTGAACGTAAAGAACAGACAGTGGGGCCATAGTACCTGACCAGAGCATTACCATCCACATCCATTTGGGGGCAGAATTGAGTtgtcaaaatataatataatGTCGAGGGAAGTAGCCAATTGACTATCATTACTTGCGTATACGTACATGCACCACTATATGCACCACTATAGGCTATTTTATAGCTCACTGCTCATCGGACTCATTTTTATCTGGGAATTGCATTAAATAATTTAAACTTTGCATTATCATTGTTTGCCAAAAATGTAGGGCTGGCCTCCCACCTGGCTAATTATTCAACAGGCAAGTTATCCACATGTTAAATGTAATTGTACTGAGGGAAAAAGCCTGTCCGCATAACGGCACGGGATCTATTATGTACTATTTAATAGGCTCTAGTTTGTATGGACTGTGACAAGTATTGCCATTCTCATAAAATTGCCATTCTCATGAGATTTGCATACGCATAGTAACTATTCAGCCAACGCTGCGCTGGAACTCTGGAACTTGTTGCTGTCACTGGGCGGGCCCTAATGATGTTGTACGCCTAGACGGGGGGTGTAATTCAAGTGAAGGAAAATCGAGTCAAGGGAGTTACCTCAACGGCAAGCTTTCGAGATATGAGATCGGGACATATTTCATGTCCGTCTTTCGCTAAATTAAAAAAAGAAGTGGAGAAAGATACAATTGAGAGTTACACAGCCAACATTCCGCCTATCAGCTGGTGGACaaatgtgacccccccccccgtgcATGCACAAATTCTCTGTGTTTACAAGTGATTGAAACCGTGCCAGCGAAGAGGGAAAAAGATAACCAAGGAGGGATGGTGGACAATTCCGGTAGCAGCAAGGCACAAATGcCCAGCATGTCACAGGAGAGTGGTCTGGGGGGTGTCTATCCTCAGGCAGGCACGGCAGGAGGAATGAAGCTCGAGGCTGTCATGGAGCAGCTGCAGCGCCAGCAGCAGGCCAGGCTGGAGATGGAGCGCAAGGAGAGGCGGCTCCGCGAGGCCCACATCATGTACACCCAACAGGTAGCAGCGCAGCAGGCCATCCTAGCTGCGGCTAGGGCCTCTGGAGCTGGCTTCATGGGCAAGGCACTGGTTGGAGGTGGTTCAGGGATACCCAGAGGAGGCCCACTGTCCCGGGTCTCTAACCAGAGCAGTGTGGACTCAGAGAGGGAGGACGAGGAGGACAGAGGCCGGGATTCAGGGGATGAAGATGACGATGAGGAGATGATGGATGGAGATGAGGGGagcgaggaggaagagggaggggctAGTGGTCTTGAGTACCTCCGCAAGCAGACACTGGCTCTTCAACAGGGTGCCTCCCACCTCCCAGCGAATCCATTTGGTAGTTACTCTACCTCGGGCCCCCAGAATGCCCCATTGCCACCCGTTAGGGTGAAGCAGGAGCCTGACGAGAGCCGCTCTCCTGCAGGGCCCCACTCTGCCTCCTCCCCCAACGGGCAGGCCGACTGGAATAGCTTTGATGATCAATTAAAACAGAATGGGAGCGCTGCTTGGGCTGATGAGAATGAcagtggaagaggaagaggaggagaggcctcCAGAGACTTTGCTAAGCTGTATGAGCTTGACAGTGACCCCAACAGAAAGGAGTTCCTGGATGACCTGTTCACCTACATGCAGAAACGAGGAACTCCAGTGAACCGCATCCCCATCATGGCCAAGCAGGTTCTGGACCTGTACATGCTTTACAAGCTGGTGACGGAGAAGGGCGGCCTGGTGGAGGTCATCAACAAGAAGATCTGGAGAGAGATCACCAAGGGCCTCAGTCTGCCCACCTCTATCACCTCTGCTGCCTTCACCCTTCGCACAcaGTACATGAAGTACCTGTATCCCTTTGAGTGTGAGAGGAAAGGTCTAAGTTCGCCAGGCGAGCTTCAGGCGGCCATCGACAGTAACCGCCGGGAGGGCCGTCGCCCTAGCTACAGCAGCAGCCTCTTCCGCTTCTCCCCCAGCACAGCCCCTCACATCCTCTCCCCTCCCAAGATGCACCTGTCTGCACTGGGGGCGGGGGCCGCTGGGAGCCTCAACGGCCTGCTGGCGTCACCCGTCCACACTCTCAAAAAAGAAGAGATCACCCCCTCCGTGATGGCAGCGGCTCGTGGTACCTCCATGTCCCTGGCGCTGGGGCAGCAGCAGGTGTCAGGGCTGGCCCGGGCTGCCACTCTGGAGCAGCTGAGGGAGAAGCTGGAGACTGGTGAGGGCCCTGAGAGGAAGATGGCACGCCTGGCAGAGGAGCAGCAGCGTCTGATGCAGCAGGCCTTCCAACACAACCTGCTTGTCATGGCCTCGCAGGTCCCCATGAACCTGCGCCTGGGCAACAGCACCACCGCTAGAGtgGGTTATGCAGATGTATGCTGCAAGACACCCACAAGGAAATATGAGAAGCAGCAGGACATGGCTCTGAGCATCTCCACCAATGGATCTGCTAGCATCAGTGTGTCTGTGGAGGTCAACGGCACACTCTATTcagGAACCCTGTTTGCACAGAAGTCAGGCGCACCAGGTACTAGCGTGTCCACTGCGGCCACAGTGCCCCCTGTTGGACCCAGCGCTGGGTTTGGGTTCGCCACCTCTGCTCACAGCCACAGTCCAAGCTCCTCCTCTTCCAAGGGGCCTTGCTCGGCCGAGCCCTCCTCCAGTGGCTCACCTTAGCTCAGGCCGCCCTACCACCCACTCTCCAGGCTTTTCCTCACCACCGAGGCCTAGCATGAATACAGTACATTGATAAATCGACAAGAAAAAACTGTTGCACAACAAATACCTCATCGTTCCTGTCAACCTTGGCTACCCATTTATGAATACACAATTCACACACCCAATTACATCTCAAGAaaacatgcacccacacacacacctatgcatTTTACACACTCGACACacatgtgcacaaacacacatgcatttcAGACACCCAGCACACAGAGACTCTTATACCAAATGCATGCTAAACACAATCAAATCACTCAGCCAAAACCCACTGACAGGTGTTCACAACTGAACTTGAAGAGTTTTATTTTATGATTTTGTTTGTTGccgtttgttttttttttgttttgttttttgaaacattattatttttttagttATCTTTTTACATACCTAAAATCAAGTAACCTGCAGTGGTATCTTTACCTCAGGAGCTGTAGTATACTTCACCTGAATTAACTTTATTTTTGTATCCTTTTTGATCTTGTTGAAATCAGGGGAATTTTGGGGAATTTCACAACGGAACCTCACTCACCTCAGCACACCTCCTACGCATTTATACAGTAGCTCTATCACAACGCTCGAGTTGCCATGACGACGGTCCGTAGCCTTTTTACTTCTGAGTGCACTACATTATTGATCCTACAGATCGCCATGTAATACCTCGTATACAGTAGTCACTCCCACAATCAATACCAGGGAGTCACCCACTCATTTAGCCTATTTGGAATGATGTACTTAATCTTCAATCTAACTCAAGATACAGATGGTGCTTGTGTCTAAAAGGCTTTGAGGATCAGAATTAGCTCTGGACATTTTATCACACACAATGTGATGTTATAAGAACCGACTGATCCGCCGATCTGTTTAGGACTAGCAAGCTCCAAACTCACCACCCCGCATCTATCTATCTAATAATCAGAAAGGTGGTGAAGGTGTTCTGGTCCCTGCTCTGGGATCAGTGTGTGTCCCTAGTTCAAttcaacagagaggagagacatatcCACCCATCAATGGTTTTCCTCCAACACTGACAGACCAGAAGTGTTTTAACCACATACCTTTTCAAACCTCATATTCGCCTCTCCGTTTGGGAGAGGGGCCTTTCTCAGGAAGCATTGTGAAGTCTCTTATTATGGACTCGCTTTGTCATTTTAAAAAAAGGATCCCACCGAAAGAATGCGCAAGTCTAACAAACTGTCTTCAAAGAATACCTCAGACTCTCTAGAAGGAGACGTACACTACATACCTCATTGCTGAAAGCCAGCGTGACTTGACCTGGGTGTTTGAGTCCCTGTGACGAGCAACGGTCCACAGGAGTGGACTCCTCCGGAATGCTGGACTACAAACGTAGAGACTTGACTGCTGGATTTTCTTGGGGGCACATTATTATACCAAGCTGAACTGGGATGTGCTTGCTCTCCTCTGGTTTTCTCTGGCTTCCTGCATTTTATGAGACTAAATCTATTTAAGAGTATTGCTCTGCATGTGTACAATCAGGTGGCCAGTTTTTTACACCGTAATCCTCTGGTGTGTGGTAGCCTCTGGTCAGTGCACAGCTGAATACCAAAGACTAGCCCTGTTCCCTGCCCAGGCTGTTGTGTGCTAGCTGCTGTGGGTTAGCCGAATAGGCTAGCTGAACCACTAGGTAGGATACAGTGGGGTAAAGGATGGGTTTCATAATAGCCCATCTTCTATAGTCCCTGCTGTTAAAGTTGTCAGCTCTAGTTATGTTGCTTTCCTTATCTTAATCAGACCTTTGCTTACCTGTGATTGAGTCTTGGGACTGGTTTTGTTCTGCCTGGCATGGCACACATCACCTGACATATACCTCAGTGAGTTATGCTGCAGTCGCACAGTGTATGATGCACAAAAAGCCCTTCGACCTAACCTCTACATTGAATAAGACTGAGAAAGGGTAGCTGTTTCTCCAACTGGTTTCTCTGTCTCAATTCAAAGTTCAGGCCTCCCAAATTCCTCCGACACATCCACTGTTACAGTATTTCCATTCTCATACTGTTCAGGTAATTTCTCAGCATTTTTAATAGAACATGATTTGGATTCAATTAATTTCTAGCATTATCTGTGTTGAATGTGAGGCGTTtaactgtttctaaaccttttaCCCCCTTATCTCTGAGGTGGGCAGCCTTGTTGccttctttttttaaattgaacctttatttaactaggcaagtcggttaagaacaaattcttatttacaatgacggcctaggaacagtgggtttaactgccttgttcaggggcaaaacagatttttatcttgtcagctcgggcattcgatctagcaacctttcggttactggcacaacgctctaaccactaggctacctgcttcccTAGTAAGCTGTGTTTTAGCTGTTATTTGTTGGCTTTTGTGGCGCAGACCACCGGTCAGGATTACAGGACCTCCACAACATATATACAATGACTGAAGAGAGACCTGCAATCCCTCAATGAAATATTATGTCCACATTTAATAAAGGTGAAAGATGTAGTTGCTGCCTTAATCAGCTGTGAGAGAACAGTGAACCTTTCATGACTCTGCTAGGAATGACTGTTTTATCTTCAAGCTTAATCCTTTGAAGAGTAACCTATTTCCATGATCTTTATGAATTCCGTCAGACATtaaggcattcatcattcatgttATTGGTTTCAAAACCAAGGTATGCTATTTATTTGTGTTGATTTTTCTTCTTCTGATGGATCGAGTTACCTTGATCACTTAGGTGGTGTCACTAAAACCCTTTTTCGTTTCTCTCGCTGTTTTAAACAGAAATGTCTGTTTTCTATCCAATCAGTCTAGTCAATGACTGTCTGACAGTGTAGCCTTACAGCCTTTGCATGAGAGAGGGAGCGTGTGTGAGAGCAAGTTCAGAATATGCTAGAGGGTGTGTAACAACCATGTAACGCCATGTAGGAGACTGCAGGTGGTGCTGTCCTCCAAGACCACACCATGACAAGGGTGGGCAACAGGTTAGAACCACATTCACTGGGAATTCAGTTTACAGCTCAGGCTTATGTGGGTTacaattgtgtgtctgtgtgggctcTTGAAGACCTCTTACCTCAGGGCATTGGGCTGCTGTCATTGTTGCATTTGGTATTGAAGTTATGCAATTGGCATGTATACTGAGGGACACATCCAAATGCAAATCTTGGACAACCTTAAAGCTGTCTCTAGTGACTTGCTAAATGCCATTTTAGATTGGTTCGGTTTTTGTTGCTTTTTGATTTGTCATCAGTTACAGGCAAGGAGGTCACATCACTCAGGAAACTGTGAAGTTGAAAGTCTGCAGAACCTTGTCCCTGGATGGTTTGGATTTTATTAGATTATCAATTGTTTAAATCTAACCTGATCTGTGTAATACAAGTGCATATGTAAGTGGTTATTGAATACCTCATTTATCAATTCTGTTGTTTTTGGCTTGTATAATGCTCCGTATATACATCTGTGGGGTTTGTGCATATTTTTGTACGGTTGTTATCatgtccataataataacattacTGATGTTATAGTTTTCTCTTTTGATTAAAACAAAATTGGGATGTGAATGCTTGTAAAACTGGTTTGTGCTGATTGTATTTAAAAGAGGAGCACTTTTCCAAAGTGATTGACACATTCAGTTTTGTTCATATTAGTAATATAAAGATATGGTTCTCAGGGCTTTAAACTTGTATGTCATGATAAAGTTTTACTTtatatctt

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU605703 lncRNA upstream 120 65440499 ~ 65440976 (+) False LOC110526360
TU605704 lncRNA upstream 227 65440499 ~ 65440869 (+) True LOC110526360
TU605681 lncRNA upstream 28111 65412372 ~ 65412985 (+) True G534894
TU605651 lncRNA upstream 64715 65375571 ~ 65376381 (+) False G534870
TU605653 lncRNA upstream 64913 65375571 ~ 65376183 (+) True G534870
TU605773 lncRNA downstream 62674 65584272 ~ 65584519 (+) True G534982
TU605775 lncRNA downstream 64597 65586195 ~ 65586907 (+) True G534984
TU605817 lncRNA downstream 114060 65635658 ~ 65642430 (+) True G535020
TU605925 lncRNA downstream 274436 65796034 ~ 65797422 (+) False G535118
TU605926 lncRNA downstream 274542 65796140 ~ 65797422 (+) True G535118
XM_021607265.2 mRNA upstream 198 65434411 ~ 65440898 (+) False LOC110526360
XM_021607264.2 mRNA upstream 10696 65414289 ~ 65430400 (+) True LOC110526359
XM_036980718.1 mRNA upstream 33821 65403608 ~ 65407275 (+) True LOC110526358
XM_036980717.1 mRNA upstream 72519 65193659 ~ 65368577 (+) False LOC110526357
XM_021607271.2 mRNA downstream 53471 65575069 ~ 65580465 (+) True LOC110526364
XM_021607273.2 mRNA downstream 247185 65768783 ~ 65771390 (+) True LOC110526366
XM_021607282.2 mRNA downstream 253189 65774787 ~ 65792680 (+) False LOC110526368
XM_036980723.1 mRNA downstream 253189 65774787 ~ 65792680 (+) False LOC110526368
XM_021607284.2 mRNA downstream 255255 65776853 ~ 65792680 (+) False LOC110526368
TU605427 other upstream 279766 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 323140 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 593992 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 664760 64769147 ~ 64776336 (+) False LOC110526344
TU603064 other upstream 2101598 63338236 ~ 63339498 (+) False LOC100750227
TU605959 other downstream 326025 65847623 ~ 65849441 (+) True G535150
TU607370 other downstream 1081187 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 1491622 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 1582708 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 1582813 67104411 ~ 67104862 (+) False G537029

Expression Profile