RNA id: XM_021607271.2


Basic Information

Item Value
RNA id XM_021607271.2
length 2024
RNA type mRNA
GC content 0.58
exon number 5
gene id LOC110526364
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65575069 ~ 65580465 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTTCATTTGTATCAAGCTACTTTTTTATTAGGTCATATTGTCAATAAGAAATACGATACTAATTAGCAGCAATGGTTTACTTTTTAGTTCAGCATATCCTCCCACCGACACCTCTGATTGGCTAAAACGGCCGGTCTGTCACGTCAATGCAGAGACCCACTGTGCAAAGGAAATTCCCAGTGCGCGTGCAGGATAAAGCGGGAATGGATCTCACGCACAAACCTTCGTTCACATTGATGTCGGtggaatataaaaataaaatctgaaaaaTGACGCAATATGCTCTAGGAGTCCACCTGCAGATTCTGCTGGCAGTGGGTCTGGGAGTGTTCTGCTTCTGCCTGGTGCTGGGCTGTCTACTGTGTTGGCGGAGAGGGAAGTATCATCCACCAGAGGACAAAGAGTCTGCACTGTCCCCTTCCTCAGCCACGTGTGAACGGATCACCGTGACCCTGACCCCCTCCTCTGGCACCTTACCCATCAAGCAGCAGTATGAGGAGCTAGACGGGGATGTCCTGGACCTCCCCTCCCACAATAGCAGCTCCTCCCCCTCTGAGAATGACCTCACCACCCTGCCCTTTGAACCTCGCCCCCGGTCGTCCTCCTCTGAGCTGAGGTCCTCCCCCAGGTCCTGCTTCCCCATGCGTCGCCTCAGCACCCCGGTagtgtcctcctcctcccactacaAGCCTTCAGGCCATGGCCGTGCCTCCCTGCCCTCCATCCCCAAACTGGGCCTAGTCTCCAAGACCCGTCGGGCGCTGGAACGCCGCTACTCCGTGAACGGTGACAACTTCCTGTACAGCGAACAGAGCCGCCTGACCAGCCCTCGCAGTGCCATGCACCCTCCTGGCCCTCAGAGGGAGCTGTCCCAGCCACAGTATGGCTCCAGCTCCAGCTCCCTATCCATCCCCACCAAGCCTGCTCCTCTCCTACACTTCTCCCTACTCTTTTCCCCGGCACGGGGCACTCTGACCACCAACATCATGGGCCTGTCCGGGGCGGCACGGCGGCGCAGTGGGGTGTTCGTACGAGCCAGCCTGCCCCCGCTCTGCCCCTCACCCCAGCAGGGGGCATCTCGGCGGCCCAGCCTCAGCCCAGAGATACAGTGCCAGAGCCTTGTGCTACAGGTGGGCTCTGTGGAAGAGCTCCGCGCCTGCACCCTCCGGCTGGCTGTGTTCAGCAGGGACTTTTCAGGCCTGAGAGAGACAGCGCTGGGAAAGCTGGAGATGCCTTGTGGGGAGATGGACTGGGAGCCCGACACAACTGTCACCTACACCAGGGAGCTCACCCCCACCAGGAGTAGGCTGAAAAGGagTATGAGTTCCCAGGAGACGTTGGGTCGTAGGAAGAGTTCGCTCTGTGCTGCTCCACGGGCCCTGGGTCAGCTCTTCATTCTGCTGCAGTACCAGACACTGGCCCACCGCATCAAGGTGATGGTCCGCAAGGCTGAAAACCTGGCCAAACTCTCCCGGATGCCAGGAGCAGCAGATCACTACGTAGTCATCAACCTCCGTCAGGATGGGAAGGTGATCAGTACGAAGGAGACCAAAGGGGCGGGAGGACACAACGCTGTGTGGAACGCTCCCTTTCTCTTTGACCTGCCTGTTGGTGACATCACTCAGCTGCCTCTTGCTCTGGAGTTCATCATCATGCAGgGGCGGCTCTACAGGAAGAGCAGCATGCTGGGCCGTGTGTTGATTGGCTGCGAGGCCCCAGAGGCAGGACAGGGACACTGGAGGGACATGTGCAGTCAGGGACAGGTGGAGACAGCGTACTGGCACCCCATCACACCAGAAGTCGTTTAGGACTTTATAGCTGACCTTATGGAGGTGTCAGGAGGGTCAGGACGTTgctggagagaggacaggtgaTAGAGGGCTTGCCAGACTAATGGGACACGCACAAAGGAcgtccacctctacgcagacgacaccattctatatacttccggcccgtccttggacactgtgctatctaacctccaaacgagcttcaatgccatacagcactccttccgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU605710 lncRNA upstream 125047 65449775 ~ 65450022 (+) True G534921
TU605709 lncRNA upstream 125376 65449492 ~ 65449693 (+) True G534920
TU605703 lncRNA upstream 134093 65440499 ~ 65440976 (+) False LOC110526360
TU605704 lncRNA upstream 134200 65440499 ~ 65440869 (+) True LOC110526360
TU605681 lncRNA upstream 162084 65412372 ~ 65412985 (+) True G534894
TU605773 lncRNA downstream 3807 65584272 ~ 65584519 (+) True G534982
TU605775 lncRNA downstream 5730 65586195 ~ 65586907 (+) True G534984
TU605817 lncRNA downstream 55193 65635658 ~ 65642430 (+) True G535020
TU605925 lncRNA downstream 215569 65796034 ~ 65797422 (+) False G535118
TU605926 lncRNA downstream 215675 65796140 ~ 65797422 (+) True G535118
XM_021607268.2 mRNA upstream 53471 65441092 ~ 65521598 (+) False LOC110526363
XM_021607267.2 mRNA upstream 53471 65441096 ~ 65521598 (+) True LOC110526363
XM_021607265.2 mRNA upstream 134171 65434411 ~ 65440898 (+) False LOC110526360
XM_021607264.2 mRNA upstream 144669 65414289 ~ 65430400 (+) True LOC110526359
XM_036980718.1 mRNA upstream 167794 65403608 ~ 65407275 (+) True LOC110526358
XM_021607273.2 mRNA downstream 188318 65768783 ~ 65771390 (+) True LOC110526366
XM_021607282.2 mRNA downstream 194322 65774787 ~ 65792680 (+) False LOC110526368
XM_036980723.1 mRNA downstream 194322 65774787 ~ 65792680 (+) False LOC110526368
XM_021607284.2 mRNA downstream 196388 65776853 ~ 65792680 (+) False LOC110526368
XM_021607283.2 mRNA downstream 196951 65777416 ~ 65792680 (+) False LOC110526368
TU605427 other upstream 413739 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 457113 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 727965 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 798733 64769147 ~ 64776336 (+) False LOC110526344
TU603064 other upstream 2235571 63338236 ~ 63339498 (+) False LOC100750227
TU605959 other downstream 267158 65847623 ~ 65849441 (+) True G535150
TU607370 other downstream 1022320 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 1432755 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 1523841 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 1523946 67104411 ~ 67104862 (+) False G537029

Expression Profile