RNA id: XM_036980722.1


Basic Information

Item Value
RNA id XM_036980722.1
length 7070
RNA type mRNA
GC content 0.53
exon number 40
gene id LOC110526365
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65600097 ~ 65765382 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCCTGTTTGCTGCCACACAGTTTCTATTTGTAAACCAAGCGCCCACGCCCATGGATGTCGCTACTTCTACACGCAGGCGCAATATCACTCCTTCTGTCAAACATGGCTGTGCTTTTGAAGAAAGAAAAATGCTGAATTGTGTTGGTAGATTTCGGAATAAGAAGCAAACATGGCGAGATTGGCTGATTATTTGATTGTCGTGAGATTAGATCAGGACAAAACTGGTGCAGGAGAAGGATGTGGGAAGATAATCCAGCGCTTCCCCAAAAAGGACTGGGAGGGCACAGTGTTTCCCCAGGGGGTGGAGATGTTCTGCCAGCCAGGAGGATGGAGGCTGTCCCGAGAGAGGAAAGCTCCCACCTTCTTCACGGTGGTGTTGACGGACATCGACTCAGACAGACACTACTGCTCCTGCCTCACCTTCTACGAGGCAGAGGTCAACCTGCAGGGAACAAAGACCACCGATGCagatgaggatgaggaagaggatggcTTGATCCAGCCCGCTCAAGTCTTTGCACCCAAAAGTCTCATTCTGGTCTCCAGGCTGGATTATCCTGAAATATTCCGGGGCTGCTTGGGCCTGATCTACACGGTGTACGTCGACAGCCTGCCGTTCCCTCTGGAGGGGCTGGTTTCCAACCTCTTCACGTGCATGGTTCCTGTGGCTGGTGGCTCCCAGAAACTGTTTTCCCTGGGAGTGGGCGACCGACAGCTAATCCAAACCCCTCTGAATGACAACCTGCCTGTTACATGCAAGAGTGTGGCCCTGCTCTTCCAGCAGCTTGGAATCCAGAATGTTCTGAGTCTTTTCTGTGCGGTTCTGACCGAACACAAGGTTTTGTTCCATTCTACGAGCTACCAGAGACTAGGGGAGGCGTCGCGTGCCCTGGAGGCGCTCATGTTCCCCCTCAAATACAGTTACCCATACATCCCCATCCTGCCGTCACGGCTGCTAGAGGTGCTGAGCTCACCCACCCCCTTCATCATCGGGGTCCACTCCATGTTCCAGAGCGAGATCCAAGAACTGTTGGACGTTATCATAGCTGATCTGGATGGAGGAACCATAAAGATTCCAGAGTGCATCCACCTGTCCCAGCTCCCTGAACCACTGTTACACACCACACAGACTGCCCTGTCTCTGGTTTTGCATCCTGATTTGGAGATAGCTGACACTGCCTTCCCACCCCCTCGCACAGCCCCCTCCAACCTCAAACTGTTGGATAAGGAGGTGCGAGCCGTGTTCCTCAGGCTGTTTGCACAACTCTTCCAGGGCTACAGGTCCTGCCTGCAGCTAATCCGCATCCATTCTGAACCTGTTATCCACTTTCACAAGACTGCCTTCCTGGGCCAGAGAGGCCTGATTGAAAACGACTTCCTGACCAAGGTTCTGGATGGCATGGCCTTCGCTGGCTTCGTGTCTGAAAGGGGTCCGCCTTACAGAGCCTGTGATCTCTTTGATGAGCTGGTGGCCTTTGACATGGAGCGCTTTAAGGAAGAGGCGGCCAGCCCTGCCAAGCTGCAGAAGCACATGAGGGAACTCTCTGACCAACTGTACAAAAACGAGAATCCCAACCCCCACATGGCGTTCCAAAAAGTGCCTCGGCCCACAGAGGGCTCCCACCTGCGGGtgcatgtggtacccttccccctGCTGGACGATGAGAAGGTGGAGCGGCTGCTGGCTGAGGGCCTGGCCAAGCATCCCAGCGCCCCtgccatcactaccaccacccgCGCAGAGAGGAAGTGTGTGGTGCCTGCCGGCCCTCCCGTGGTGTCCATCATGGGAAAGATGGGCTCAGTGTTCAACAGCGCTCGCAGGCTGGAGGTGGTGAGGAGCTGCATCTCCTTCATCTTCGACAACAAGACCCAGGAGACGGAGAAGACCCTGCCGGCTGCGCTGCGTGCTCTGAAAGGCAAGGCGGCTCGCCAGTGTCTGACTGAGGAGCTCAGTCTGCATGTCCAGCAGAACCGGGCCATACTGGACCACCAACAGTTTGACTACGTCATCCGCATGATGAACTGTGCCCTCCAGGACTGCTCCAGCTCTGAAGAGTACACGGTCGCCTCCGCCCTGCTGCCCCTGACGACGGCCTTTTACCGGAAATTGCCGGCTGGTGTGAGCCAGTTTGCCTACACCTGTATCCAGGACCATCCCATTTGGACCAATCAGCAGTTCTGGGAGGCCACGTTCTACAGTGAGGTCCAGAACCAGATCCGAGCCCTGTACCTCACTGCCCCTGAAGACAAACTAGGAATCACTGCCAGGTTAAAGGAGCAAGGTCCCCTGCCCCCGGCGGCCCCCAGCGCCTTGGAGCGCACAGCCATGGACCTGGCGGCGGAGCAGCTGCGCGCCTGGCCCTGCCTCAGCAAGGAGAAGCAGCAGGAGCTGGTGAAGAACGAGGAGAGCACAGTGTTCAGCCAGGCCATCCACTACGCCAGCCTCCTGGTCTACCTGCTGGTCCCCCTGGACACCAGCAAGAACAAGCTGCTCAGAGCCAACCCTGTCGCTGACTGGGAGAGTGGCAGCAACAGCATCGTCACCAACAGTATTGCAGGCAGTGTGGCGGAGAGCTTTGACACAGAGAGTGGCTTTGAGGACTCTGAGAACAGCGACGTGGCCAACTCTGTGGTACGGTTCATCGCCCGCTTCATTGACAAGGTGTGCACAGAGAGTGGCGTCAGCCAGGACCACATCAAGAGTTTGCATAGCATGATCCCAGGCATCGTGGCCATGCAGATGGAAACTCTGGAGGCGGTCCACAGGGAGAGCAGGAGGCTGCCACCCATTCAGAAGCCTAAGATCCTGCGCCCAGCTCTGCTCCCTGGTGAAGAGTTTGTGTCGGAGGGTCTTAGAGTGGTCCTGGACCCTGATGGCAGAGAGGAGGCAACGGGGGGGATGCTCGGGGGACCGCACATCCTGCCAGCAGAGGGAGCCCTCTTCCTCACCACCTATCGCATCATCTTCAAGGGCTCCCCACACGACCCACTAGTGGGGGAGCAGGCAGTGATCAGGAGCTTCCCAGTGTCCACCTTGACCAAAGAGAAGAAGATCAGCGTCCAGAACCAACTGCAGCAAAACATGCAGGAGGGACTGCAGCTCCGCTCGGCATCCTTCCAGTTGATCAAGGTGGCGTTTGACGAGGAGGTGAGCTCAGAGATGGTGGAGGTCTTCAGGAAACATGTCCAGAGGATCCGCTACCCTCAGTCCATCTTCAGCACATTTGCCTTCGCCGCAGGCCAGACCGCTCCCCAACTCATCCTTCCCAAACAGAAGGAGAGGAACACAGGTTTCAGGACGCTGTCCAAGACCATTGTGAAAGGAGCCAAGAGAGCTGGGATGATCACCATGGGCCGTCAGAGTCAGACCACGCTGAAAAAGAACGACCGAGGGAGTCGGATGACCTGGCACGAGGATGATGACATCTCAGTGTCGGATGAGGGTGAGCCACCCCCCAGTAGCACGTTGAGGGCATCAGAGAAATCCACCATGGAGCAGCTGGTGGAGCGTGCGTGTTTCCGTGACTACCAGCGGCTGGGCCTGGGCACCGTCACAGCCAGCTCCTCCCGCTCTAAGACAGGAGAGCAGTTCAGAGTCACTGCAGTAAACAGACTCTACTCCCTCTGTCGCAGTTACCCAGGGCTCCTGGTGGTTCCCCAGTCAGTGCAGGACAGCAGCCTGCAGAAGGTGGCCCGTTGTTACAGACATAACCGCCTGCCAGTGGTGTGTTGGAAACACCCCCGCACCAAAGCTGTGCTGCTACGATCCGGAGGCTTCCACGGCAAAAGTGTGGTGGGACTCTTTAAGTCCCAGAACCAATCTTCAACAGCCCCTGCCAACTCTTCTGAGTTGTCCAGTAGTCTGGAGCAGGAGAAGTATCTTCAGGCCATCCTCAACTCCATCCCTGTCTACTTCAAACTGAACGGCAGTAACAGTCTGTCCAACCGCTCTCTCATCGGCCTCTCACCAGGTGTCTGGGCCAGCCTGCGTTCCAGCAGCCGCTTCAGCCAGCACCCTTCTGCAGCCGATGTTGGTGCCAGGCTGGCAGGAAAGGATTTGGCGCCCCCTGCAGGCAGCGAGAGCCTGCATGCCCAGCTCCTCAAACAGCAGGCTGCCCTCTACATTTTTGGAGAGAAGTCCCACCTCAGGGGCTTCaaactggactctactctgaacTGTGAACTGGTGCCTGTGGACTTTGCTGACACGCGCCAGATCAAAGGTGCCTTTAAGAAGCTGCTGAGGGCCTGTGCTCCGAGCGCTACGTCTTCAGACGCACAGGACTCCTTCCTCAAAGCCCTGGAGGACTCTGAGTGGATCCTCCAACTTCACAAGCTTCTGCAGTTGGCCCTGATTTTGGTGGAGCTGCTGGACAGTGGCTCGTCCGTCCTGCTGAGTCTGGAGGATGGCTGGGACATCACCACACAGgtggtGTCCCTGGTCCAGCTGCTGAGTGACCCGTTCTACCGGACCCTGGAGGGCTTCCAGGTGCTGCTGGAGAAGGAGTGGCTGTCCTTCGGCCACAAGTTCAGCCAGCGCTCCAACCTGACCCCCAGCAGCCAAGGCAGTGGTTTCACGCCCATCTTTCTGCAGTTCCTGGATTGCGTGCACCAGATCCAGGACCAGTGCCCTTTGGAGTTTGAGTTTAATCAGCACTATCTGAAGTTCCTGGCATACCACTACATCTCCAACCGCTTCAAGAACTTCCTCCTGGACTCCGACTATGAACGCCTGGAGCATGGCACATTGTTCGAGGACAAGCCGGGAGACAAGCAGGCCAGGAGGGGGGTCTGTATCTGGGAGTGTATCAGCAGAATACACCGGAGGAGTCCACTGTTCTTCAACTACCTGTACAGTCCCACAGAGGCTGAGCCGGTGCTCAAGCCCTCTATCAGCATCCCTGCTTTGAGGATGTGGGACTTCTTCACAGGGGAGACTCTGTGCACAGGCCCGTCCTATGACTGGAGGATGCTGGCTGTCAGGTCGGAGAGCATGGATGAGACGGACACCATCGCCACCAGCAAGAGGAGGATCGTGTGGCCCTGCTACAGCAGTGTGGGGCGCGCCCAGCCTGACGCCATCACCAAGCTCCTGGCTGACATAGAGCGGCTGGAGGGGGAGATGAGCCAAGCACCAGAGAGGTGGCAGGCCACTCTGGAGAGGGTCCGAGTCAGTATCCAGGAGGACCTCAAACAGGAGGGAAATCTCCGAAGGCAGTCTGCGTCCACCTCGGGGCTGATCCCCACGTCCAGTTTGCAGGCGTTCCAGAGACGTTCCATGCTGCACCTGCCTGACAGTGGCTTGGGGGAGGACACCAGCCCCACTGCCACTAATGGGGTCAACCGCCGGGCCGCCACACTCTACAACCAGTTCACCCCCAAGAACGAGGAAAACAGATCGTTTGAGGGGATTCTTTACAAACGAGGAGCACTGCTGAAAGGATGGAAACCTCGCTGGTTTGTTTTGGACATTACAAAACACCAACTGAGGTACTACGACACGGGGGAGGACACTAACTGCCGGGGCCACATTGACCTGGCGGAGGTGGAGTCAGCTCTGATCGCCACCCCTACCATAGGAGCACCTAAACACATCAGCGAGAAGGCCTTCTTCGACCTGAAGACCACCAAGCGAGTGTACAACTTCTGTGCCTCGGATGCCCAGAGCGCCCATCAGTGGATGGACAAGATCCAGAGCTGCATCTCCGACGCTTAACCTCTGAACTCTCCAGCCAGGGCGTGGTCGGGTGTGGTCAGGTCACAGCATTAGTACTAGGTGCAGCAAGGTGGCTGAGCGCAGAGACTGTGTgcacatatatacagtgcatatTCAGCTCCGTCACCATGGTAGTGGTTTTACCATGAGGACCACAGTGATCTAAGTGCCTGTTAGTGGAGGCTAtgatatccatccatccatcctgctgCCTTGCAGGACTTCAGgcagttgtctgtctgtctgacagctttggTATAAGTTGATTAATGTGCTCCTGTCTCTGCCATCAGCTCTCTCTGTACTGTTCCTTGTTACTGCTACAGGGATCAACACTTATAGTGAAAAGTAAATGGAAAAAACGGATGCCTGAGCACTATTAAGTATAGTTTATGCCATTTCAGTTGTAAATAGATAAAAGCAATAGCACTGGCCATTTTAAACTGTGGGTTCAATATATACAGTAAActaagatatatatataaagcatACAAGAGAATTTATTTCAGATATTTTACAATGAGGAAAAGGTATTGCTGCTTGATGAAAGGTCTAAACCACCGAAAACTCAGAGGTTTTGAAAATGCACAATATGACAAGGCCATTTGTTTGCACTTAGTTCTATAATATGCACTCCATATAGAATGATAGATTTTCTTACTGAAGCGAACAGCCAGGCAAAAGCCATTACTTTATGATGATGTACATAAGGACCTTTTCCTTATTATACAAATTGGAAGAGAGAAAAAACACTAAAGTTCCAAACATGTTCCTGACATTTTATATTTAAGCAAGTGATGTCCTCTATTTTTAAACATACACTATGAATGTTTTGACTCATGGATACGTTTGTTTGTTCTTGTAATGTAAATAATTGTTTTTATTAAAAGAGTAACTCGTGTTGTTAAAGTGTGGTGTCTTAATGTTTTATGTAAATACTCATGTGATATTTCCTATTTTTTATATATAACATGTGTATGCTTTTCTAATCTTAACTGTAATAAGACCAACTTTACAATTCTGCATGTTGGTATGTATTGTCTTGTATGTACAAGTATAGTAACCTTGTTTCCTGTCTTTGATGAGACTGACTATGAGCCATTGTGTGTTCGATGAAGGGGAGTTGACTATATTTCTCAGAATATCCAGAAAGACTGTCTTAAGGGCTTTTAAATAAATCCGTCAGTGTGGTTTGTTTCATCTGTTGTCTGCATCTTCCAGTTTGAGATAAATAGAGCATCAGTCATTTCAGAAGCTATTTGAGAAGATGTATGTTACTGTATcttttgtaccatgttttgttgaTACTAATGTTTTTTTGGAAATAAATCAAGAGTACTTGAACTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU606662 lncRNA downstream 1287 65598469 ~ 65598810 (-) True G535798
TU606660 lncRNA downstream 3603 65596266 ~ 65596494 (-) True G535796
TU606655 lncRNA downstream 13466 65586323 ~ 65586631 (-) True G535791
TU606565 lncRNA downstream 45116 65499956 ~ 65554981 (-) True G535714
TU606594 lncRNA downstream 71037 65491091 ~ 65529060 (-) True G535731
TU606788 lncRNA upstream 30607 65795989 ~ 65797342 (-) False G535905
TU606787 lncRNA upstream 30757 65796139 ~ 65797342 (-) False G535905
TU606789 lncRNA upstream 30757 65796139 ~ 65797435 (-) True G535905
TU606812 lncRNA upstream 75327 65840709 ~ 65842247 (-) True G535925
TU606827 lncRNA upstream 93646 65859028 ~ 65859247 (-) True G535934
XR_002473936.2 mRNA downstream 53649 65526561 ~ 65546448 (-) True LOC110526361
XM_021607266.2 mRNA downstream 53650 65525672 ~ 65546447 (-) False LOC110526361
XM_036980695.1 mRNA downstream 466272 65113278 ~ 65133825 (-) True LOC110526352
XM_021607250.2 mRNA downstream 466325 65113278 ~ 65133772 (-) False LOC110526352
XM_021607249.2 mRNA downstream 468650 65113278 ~ 65131447 (-) False LOC110526352
XM_021607286.2 mRNA upstream 27437 65792819 ~ 65795668 (-) True LOC110526369
XM_021607278.2 mRNA upstream 32691 65798073 ~ 65813747 (-) False LOC110526367
XM_021607281.2 mRNA upstream 32691 65798073 ~ 65816129 (-) False LOC110526367
XM_021607277.2 mRNA upstream 32691 65798073 ~ 65817404 (-) False LOC110526367
XM_021607274.2 mRNA upstream 32691 65798073 ~ 65820337 (-) True LOC110526367
TU605344 other downstream 714565 64855495 ~ 64885532 (-) True G534603
TU605061 other downstream 985301 64578798 ~ 64614796 (-) True G534349
TU604906 other downstream 1100483 64498453 ~ 64499614 (-) True G534201
TU604146 other downstream 1774572 63823899 ~ 63825525 (-) False igdcc3
TU603463 other downstream 2609819 62985529 ~ 62990278 (-) False LOC110526310
TU607101 other upstream 497104 66262486 ~ 66276289 (-) True G536183
TU607202 other upstream 511820 66277202 ~ 66281619 (-) False LOC110526379
TU607649 other upstream 735006 66500388 ~ 66505025 (-) True LOC110526387
TU607613 other upstream 783985 66549367 ~ 66549974 (-) True G536630
TU609527 other upstream 2376869 68142251 ~ 68144907 (-) True G538277

Expression Profile