RNA id: XM_021607273.2


Basic Information

Item Value
RNA id XM_021607273.2
length 1678
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110526366
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65768783 ~ 65771390 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGAGACTATTAGCACAGTGTCACAGCTGCCTTTCAGCACCAACAGCAACTTCAAGAAGCCTTTGGAATActctctccacattgactctactaTAACTACTTTATCACCCAAGTGAATTATTGAAGGATTTCAGGTACCAGTCAAAATGAAACTGATCCTGCAGTCTTTCCTCTACGGCTGTCTGCTGGCCACCATTGCACAGAGTGTGGCTGGATTCCAATTTGAAATTAGCCCAGAGCTCAAAAAGAGGTTAAGCATATGGATGCAGAGCAGATTGAGACGAGATCTAAACAGTTTTTCTGCAGAGAGGATAGCAGAGTCTGTACAGTTTGTCAGCCCAGAAGACGTCAGGGACACCCTGATTCCTCATTCCAGcaCTGACATCAGTGTCCGAACCAAGAGGTCCAAAAATTCAGTGAACCAGGCCTGGAGACCGGGCTGCTCTCTGGGCACCTGCACTGTGCACGACCTGGCCCACCGCATCCACCAGCTCAACAACAAGCTAAAGATTGGTAGTGCACCCATCGACAAGATCAGCCCACATGGCTATGGCCGTAGGCGTCGTTCCCTCCCTGAGCGCAGGGCCACACTGAGGCTGGAGGGAGGCAGGCTGAGGCCTGTGTGGGGCAACACAGACTCACACGTTCACAAGCTGGAGGAGCTGCTCAGACGGACATGAGCTGGACTTGTACGGGGgaggaacaggggaggagagCAGCAGCCGAGGCTTAGTGTCTCTGCCCTGTTCTAAAATTCTCCAAATGCCTcagactttttccaaatgttctcCAGTGCATTTTTTCCAGACGTGAGTACTGAGCGATAGCTGCAGCGCCTCTGGAAGCTGGACTTAGCAGAGGCATTGGCGATGCAGAGCGCCAAAACGACAGCTGGTCTACAGGCACTGGATGGCACcgtgaagagagagaaggagagatgctGAGGATGGTGCTATCTCTGCCCAGCTGTGGGAGAGGAGCAAGGTCAATACAGAGGTACAGACTCAGAGAAGAGTCCACCGCGTAAATACTGGGACTCCATAAACCTGTTATGCAGATCCTGAACTTTGAGTTTTACCCTGTGGATTTACAGGAGCCAATTTCACCGAACCCTCTATACTCATCTGCACTTTTCAGTCCCAGCCTTCTCAGTCAGACATCTACGTGGACCTAAAATATATCCAAAGACATCTGGTCCGTGCCAAACAGGGAGATAAGACATAAGGAGATGGACGTATAATAAAGAGCTATGAAGCTGAAGTTTTTGGTCACTGTATGAGGGAAATGCATTAGAGATTGTATGAAATATCTGTGCCAGTCCACAATGGATGGAACTATACTTGAATATGTTTTGTATAAAACACATGTGCAATCTATGTATGTATATTTTTATTTGCCAGTTTGTATATAAGATATTTCAGATATCATTATTTAAATATTATATAGGTTAGATTCAACTACTTATGGAGATAGAACTATTTTTGTACAGGAAGAAAATATAAGGGCATTGTAACTATTTGTTGTTTCCACTATTGTTTGCATCATGGATGTCATATGTTTCGAACTGTGCTCATAGGATAAATGGTTTTATAGCTATGGTATAATATATTTGTAAATGTGGTCTATTTTATTTGTGTCGAAGCAATTAACATTGTCATACAATAAACATTTTGCATA

Function

GO: NA

KEGG:

id description
K12333 ADM; adrenomedullin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU605817 lncRNA upstream 126353 65635658 ~ 65642430 (+) True G535020
TU605775 lncRNA upstream 181876 65586195 ~ 65586907 (+) True G534984
TU605773 lncRNA upstream 184264 65584272 ~ 65584519 (+) True G534982
TU605710 lncRNA upstream 318761 65449775 ~ 65450022 (+) True G534921
TU605709 lncRNA upstream 319090 65449492 ~ 65449693 (+) True G534920
TU605925 lncRNA downstream 24644 65796034 ~ 65797422 (+) False G535118
TU605926 lncRNA downstream 24750 65796140 ~ 65797422 (+) True G535118
TU605964 lncRNA downstream 52979 65824369 ~ 65824684 (+) True G535155
TU605965 lncRNA downstream 53607 65824997 ~ 65825435 (+) True G535156
TU605967 lncRNA downstream 55987 65827377 ~ 65827923 (+) True G535158
XM_021607271.2 mRNA upstream 188318 65575069 ~ 65580465 (+) True LOC110526364
XM_021607268.2 mRNA upstream 247185 65441092 ~ 65521598 (+) False LOC110526363
XM_021607267.2 mRNA upstream 247185 65441096 ~ 65521598 (+) True LOC110526363
XM_021607265.2 mRNA upstream 327885 65434411 ~ 65440898 (+) False LOC110526360
XM_021607264.2 mRNA upstream 338383 65414289 ~ 65430400 (+) True LOC110526359
XM_021607282.2 mRNA downstream 3397 65774787 ~ 65792680 (+) False LOC110526368
XM_036980723.1 mRNA downstream 3397 65774787 ~ 65792680 (+) False LOC110526368
XM_021607284.2 mRNA downstream 5463 65776853 ~ 65792680 (+) False LOC110526368
XM_021607283.2 mRNA downstream 6026 65777416 ~ 65792680 (+) False LOC110526368
XM_021607285.2 mRNA downstream 6027 65777417 ~ 65792680 (+) True LOC110526368
TU605427 other upstream 607453 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 650827 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 921679 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 992447 64769147 ~ 64776336 (+) False LOC110526344
TU603064 other upstream 2429285 63338236 ~ 63339498 (+) False LOC100750227
TU605959 other downstream 76233 65847623 ~ 65849441 (+) True G535150
TU607370 other downstream 831395 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 1241830 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 1332916 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 1333021 67104411 ~ 67104862 (+) False G537029

Expression Profile