RNA id: XM_021607282.2


Basic Information

Item Value
RNA id XM_021607282.2
length 3854
RNA type mRNA
GC content 0.48
exon number 16
gene id LOC110526368
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65774787 ~ 65792680 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCGGTGAGAGGACAACAATGGTAGTGTAACCTATGTGAGTTATGACCAACTGATACTCATGTGCATTCTGGATAAGTAGTAAGAATGAACACTTTACTTTATGTCATTTTCTATGCAGCAGCAGTGAAAGAGTTAAGGATGGTGTCTTGTGCACTGGAGGGTGATGAGTGAGTTATCTCCTTACCACCACAGGAGCAGATAATGACTGAGGGTTTTCTCTCAGGGAACTTCCAGAGTTCAAATAGTCTGCCTGACTGCAGAAGGTACGGAGGCAcggagacagaggagCCCCAAACACTgtgaggaagatgaggagaggagacacccCTCTGCTAAAGCAGCAGTCAAGCCCCTGCTTGGGAAACGACATGCCGAGACAATTCCCTAAGATCACGCTGAGCGAGGTGGATGAGGAGACACGTCTGCTGGCTGAGAAGGTGTACGCGTCAGCGCTGAAGGAGGAGGACACTAAGGATGCCCTGTCCATGTTCACCGTCCCTGAGGACTGTCCCATCGGCCTGCACCAGGCCAAGGAGAGGGAGCTGCTCAAAGAGCTGGCAGAGCAGCATTCAGAAGAGAGCGCCAAGAGGAAGAAGAGTTTCAAGATGATCCGTTCGCAGTCTGCGTCCTTGCAGGGCCTGCAGATCCCTGTGACTGCAGAGTGGGCCCGTTCTGTGGTGACCCCattcctctcaccctcctccaccTGCTCCTCACTTCCAGAGAACTGCCCCGAGTACCAGAGGGTCACCATCAGTGGAGACTACTGCGCTGGTatCACAGTAGAGGACTATGAACAGGCAGCAAAAACCCTGATGAAAGCCCTGTTCATTagggagaagtactccagactgGCCTACCATCGCTTTCCCCGTACCGTCGCTCAGTTCCTCCGCAGCGCTGAGAACCAGACGTGGAAGGAAGAGGACGAGGTTCTACcagATGTCTGCCCTTGCCCTAGGGAGGGGGAGGACCCTTACAGCATTGAGAATATCCCAGACAACCTGAGCTATGAGCTGCAGACGAAAGATGGCATAGTGTATGTGTATGAGAACGCAGAGGCTCTAAGTCAGAACAGGCCCCGCAGCCTACCCTACCCTGACCTGGAGACCTTCGCCATAGACCTCAGCCATGTGCTGGCCATGATCGTTGATGGACCCACGAAGACCTATTGTCACAGACGCCTGAACTTCCTGGGCTCAAAGTTCTACCTGCATGAAATGCTCAATGAGATGGCTGAGCTAAAGGAACTGAAGGGTGTTCCACACAGAGACTTCTACAATGTCAGAAAGGTGGACACACACATCCATGCAGCCGCCTGCATGTCCCAGAAGCACCTTCTAAACTTCATCCAGACCACCTACAAGACGGAGGCAGACCGTGTGGTGCTGGAGAAGGGTGGGCGGAAGCTGACCCTCAGAGAGGTGTTTGAACACCTCAACATGGACCCCTATGACCTCACTGTGGACTCCCTGGATGTACACGCTggcagacaaACCTTTCACAGATTCGATAAGTTCAACTCCAAGTACAACCCAGTGGGGGCCAGTGAACTCCGAGAAATCTACCTGAAAACAGACAACCTCATAGATGGAGAGTACTTTGCACGCATTATCAAGGAAGTGTCCCATGACCTAGAGGAGAGTAAGTACCAGCATGCTGAGCCTCGTCTGTCCATCTACGGACGCTCTGCAGATGAATGGGACAGCCTCTCCAAGTGGTTCATCCAGCACAAAGTGCACTCTACCAACATGCAGTGGATCATCCAAGTCCCCAGGATCTATGATATTTTCAAGTCAAAGAAGTTGATCACGAACTTTGCCAAAATGTTGGAGAACATATTCCTTCCTCTGTTTGAGGCTACAGTCAATCCACAGAAGCATAAGGAGCTACATGTATTTCTCAAATATGTGACAGGCTTTGACAGCGTGGATGATGAGTCCAAGCACAGTGACCACATGTTCTCCTACAAGAGCCCCAAACCTGAGCAGTGGACAGCAGATGAAAACCCTCCCTACAGCTACTACCTCTTCCACATGTACGCCAACATCATGGTGCTCAACAATCTGAGGAAAGAGCGAGGCTTAAGTACCTTCCAGTTCCGTCCACACTGCGGGGAGGCTGGATCCATCACCCACCTGGTCTCTGCTTTCCTCACCGCTGACAACATCTCCCACGGCCTCAACCTCAAGAAGAGCCCCGTCCTACAGTACCTGTACTACTTGGCCCAGGTGCCCATTGCCATGTCTCCTCTGAGCAATAACAGCTTGTTCCTGGAATATTCCAAAAACCCTCTCAGGGAGTTCCTACACAAGGGGCTGTGCGTGTCTCTATCAACAGATGATCCTATGCAGTTCCACTATACCAAGGAGGCACTGATGGAGGAGTATGCCATTGCGGCCCAGCTGTGGAAGCTCAGCACCTGTGATGTGTGTGAGATTGCCAGGAACAGTGTGCTGCAGAGTGGCCTGTCTCACCAGGAGAAGAAGCACTTTATTGGGGCCAATTACTTGAAGGATGGACCTGAGGGGAACGACATTCGGCGGACCAATGTGGCTCAGATCCGCATGGCCTACCGCCACGAGACCCTGTGCAATGAGCTCAGCTTCCTAGTGGATGCAGTGAAAACTGAAGCGGCCATTGGCACACAACCCGAGTGACCACAATAACATGGGATTTAGCTCAATCTGTGCATGTAAGCTCTCAACCCTCACAACGATGTCTCTTGCATTCACGGGAGAAAAAACCCAATGGTTTGAATGAATAAGTGTGTCTCTTGTTTCTCTGGCTGCATGTGTGCTAGTAGTGCTCAAGTGGCAAAGTGGTCCCTGAAAATGGTGTACTATGTGCAGATATATGCCTAAGTGGCTGGCCCACATGGAGGAATATGTAGGCCAAGCACAGTTTCCAGAAAAGCAGTTGCTTTCAAACTAGGCATTTCATGGataattgaggtaagacagtaattctgctaATATAtcatgcatgtatgaactacacattgacacatccaaaGTGGGAGGCTTAATAAATACTTATTAGTCGCCAAAgttccggagcatgtctttaacagTATAAAAATAGTTTGGAGAGGTAGCAGTAGGAGCCAACTACATCTTAGTGTCTAAATTATGTATGTCCACAGTACAAGGGTTTCTTTCTACAGTACAGCAACATCATCTGCACTAAGGCTGGCTCACTCTGCAGAGCACTTACTCACAGTTCAGTAATGGAACAACATATTTGGGAGAAAAAACACTGGCCACATCTATTTTGATGTCCGACACTCACTGTATCATGCCTTCGTGATGGGCGGTCCCAGCTGTTGGCGGAACCTGACAGTGTTTATCTCTGGAGCTGGAACACTGCTTTAGCTGTGATGAATGGTACATTTCCACTGTCCCTTTCCATGTGAGCTCGTTTTTTACAGGATGTCATGCAGTAGGTTGCAAGGAGGACACTGAAGTCAGTTGTGGGCACTGTAGGTACAAAACATTGTACTTGTATGCACTGTATGATATTTGCTTGAAATATTTGTGTGAGTGTTTTATTTCAATTTGAATGAAAACGGGCGTTTCTATTGGTCAGAGTATGCAATATTTAatttgaatgtactgtatgtataacttTGGAAAGCAACTATGAGCCAATTGAATGTTGAGAGTTTGGACAAGATAAAAAAATGTGAAGGCATATCTTCTCCTCTAGTTGCACTGAGATACAAGTGTCCAAAGATGGACAAAGATGTTATACTGCTCTCTCACCTCTTGCTCGTTAATGGCTGACAGAATGCTGTGAAATAGCCTGTTCTTAATTATGTTACTTTTGTTATCAATAAAGATATTTAAACGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU605817 lncRNA upstream 132357 65635658 ~ 65642430 (+) True G535020
TU605775 lncRNA upstream 187880 65586195 ~ 65586907 (+) True G534984
TU605773 lncRNA upstream 190268 65584272 ~ 65584519 (+) True G534982
TU605710 lncRNA upstream 324765 65449775 ~ 65450022 (+) True G534921
TU605709 lncRNA upstream 325094 65449492 ~ 65449693 (+) True G534920
TU605925 lncRNA downstream 3354 65796034 ~ 65797422 (+) False G535118
TU605926 lncRNA downstream 3460 65796140 ~ 65797422 (+) True G535118
TU605964 lncRNA downstream 31689 65824369 ~ 65824684 (+) True G535155
TU605965 lncRNA downstream 32317 65824997 ~ 65825435 (+) True G535156
TU605967 lncRNA downstream 34697 65827377 ~ 65827923 (+) True G535158
XM_021607273.2 mRNA upstream 3397 65768783 ~ 65771390 (+) True LOC110526366
XM_021607271.2 mRNA upstream 194322 65575069 ~ 65580465 (+) True LOC110526364
XM_021607268.2 mRNA upstream 253189 65441092 ~ 65521598 (+) False LOC110526363
XM_021607267.2 mRNA upstream 253189 65441096 ~ 65521598 (+) True LOC110526363
XM_021607265.2 mRNA upstream 333889 65434411 ~ 65440898 (+) False LOC110526360
XM_021607287.2 mRNA downstream 41079 65833759 ~ 65843569 (+) True LOC110526370
XM_021607289.2 mRNA downstream 155739 65948419 ~ 66035381 (+) True LOC110526373
XM_021607292.2 mRNA downstream 292439 66085119 ~ 66098315 (+) False LOC110526374
XM_021607293.2 mRNA downstream 292439 66085119 ~ 66098315 (+) False LOC110526374
XM_036980729.1 mRNA downstream 292439 66085119 ~ 66098315 (+) False LOC110526374
TU605427 other upstream 613457 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 656831 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 927683 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 998451 64769147 ~ 64776336 (+) False LOC110526344
TU603064 other upstream 2435289 63338236 ~ 63339498 (+) False LOC100750227
TU605959 other downstream 54943 65847623 ~ 65849441 (+) True G535150
TU607370 other downstream 810105 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 1220540 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 1311626 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 1311731 67104411 ~ 67104862 (+) False G537029

Expression Profile