RNA id: XM_021607287.2


Basic Information

Item Value
RNA id XM_021607287.2
length 4221
RNA type mRNA
GC content 0.52
exon number 22
gene id LOC110526370
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65833759 ~ 65843569 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCGGTATTACACTAGTGGGTCATATCATTCCACCAGTCGCTCGCTGTACTACCCGGACATTGTTTTGTGAACACCTATGCATTTGTTCCAGAGCGGAAGTGGAGCCAGATCTTTGAGACCACGGGTACAGCTGAACACATTTTGGGAATATATTAGAGTAGGGACGTGGATTTCCATCAGCCAATATGTCTCGGGGTTCAATTGAAATCCCCTTACGGGACACCGACGAGGTTATTGAGCTTGATTTCGACCAGTTGCCAGAAGGAGATGAGGTCATCAGTATCCTGAAACAGGAGCACACACAGTTGCACATATGGATTGCTCTTGCTCTGGAGTATTACAAACAGACGAAGACGGAGGACTTTGTCAAGCTGCTGGAGGCGGCCCGTATCGATGGGAACCTAGACTACAGAGACCATGAGAAGGACCAGATGACCTGTCTGGACACCTTGGCAGCCTACTATGTCCAGCAGGCACGTAAAGAGAAGAACAAAGATGCCAAGAAGGAGCTCATCACTCAGGCCACCCTGCTCTACACCATGGCAGACAAGATCATCATGTACGACCAGAACCACTTGTTGGGAAGAGCCTGTTTCTGTCTGCTGGAGGGGGACAAAATGGACCAGGCTGACGCTCAGTTCCACTTTGTCTTGAATCAGTCCACCAATAACATCCCTGCTCTACTTGGTAAAGCTTGCATCTCCTTCAATAAGAAGGATTACAGGGGAGCACTGGCCTACTATAAGAAGGCTCTACGCACAAACCCTGGATGTCctgCCGAAGTGAGGCTGGGGATGGGCCACTGCTTTGTCAAGCTCAGTAAGCTGGAGAAGGCCCGTCTGGCCTTTGGCCGGGCCCTGGAGCTCAACTCCAAGTGTGTGGGAGCCCTTGTGGGCTTGGCTGTGCTGGAGCTCAACAGCAAGGAGCCCGACTCCATCAAGAATGGAGTgcagctcttatccagagcctaCACCATCGACCCCAGCAACCCCATGGTGCTCAACCACCTGGCTAACCACTTCTTCTTCAAAAAGGACTACAGTAAAGTGCAGCACCTGGCTCTCCATGCCTTTCACAACACAGAGGTGGAAGCTATGCAGGCTGAGAGCTGCTACCAGTTGGCCCGCTCCTTTCATGTACAGGAGGACTATGACCAGGCCTTCCAGTACTACTACCAGGCCACCCAGTTTGCCTCGTCTACCTTTGTGCTGCCTTTCTTTGGCCTGGGGCAGATGTACGTGTACCGTAGAGACAAGGAGAATGCAGCCCAGTGCTTTGAGAAGGTCCTAAAGGCCTACCCCAACAACTATGAAACCATGAAGATCCTGGGCTCTCTTTATGCTACTTCAGATGATCAGGAAAAGAGAGACATTGCCAAAGGTCATCTGAAGAAGGTGACCGAGCAGTACCCTGATGACGTGGAGGCCTGGATCGAGCTGGCCCAGATCCTGGAGCAGACCGACATCCAGGGCGCCCTCTCTGCCTACGGCACGGCCACCCGCATTCTGCAGGAGAAGGTCCAGGCTGACGTCCCCCCTGAGATCCTCAACAACCTGGGGGCTCTCCACTTCAGACTGGGGAACCTGGGAGAGGCCAAGAAATACTTCCTGGCTTCTTTGGAGCGGGCCAAAGCTGAGGGCGAGCATGACGAGCATTACTACAACGCCATCTCTGTCACCACCTCTTACAACCTAGCCAGGCTCTACGAGGCCATGTGCGAATTCCACGAGGCGGAGAAACTCTACAAGAACATCCTGAGGGAACATCCCAACTACGTTGACTGTTACCTGCGTCTTGGGGCAATGGCTCGTGACAAAGGAAACTTCTATGAAGCTTCCGACTGGTTCAAAGAGGCTCTGCAGATTAATCAGGATCACCCAGACGCCTGGTCCCTGATCGGGAATCTCCACTTGGCCAAGCAGGAGTGGGGTCCGGGTCAGAAGAAGTTTGAGCGTATCCTCAAGCAGCCGTCCACTCAGAACGACACCTACTCCATGCTGGCCCTGGGCAACGTGTGGCTCCAGACCCTGCACCAGCCCACTAGGGACCGGGAGAAGGAAAAGAGACATCAGGATCGAGCCCTGGCCATTTACAAACAGGTCCTACGAAACGACTCCAAGAATCTTTACGCTGCCAACGGCATAGGTGCCGTCCTGGCCCATAAGGGCTACTACCGAGAGGCCCGTGACGTGTTTGCCCAGGTGAGAGAAGCCACAGCTGATATCAGCGACGTCTGGCTCAATCTGGCCCACATCTACGTGGAGCAGAAACAGTACATCAGCGCTGTGCAGATGTACGAGAACTGTCTGAAGAAATTCTACAAGCATCAGAACACTGAGGTGCTGCTGTACCTGGCTCGGGCACTCTTCAAATGCGGGAAACTCCAGGAGTGCAAACAGACTCTGCTGAAGGCGCGTCACGTGGCCCCCAGTGACACGGTGCTGATGTTCAACGTGGCCCTGGTGCTGCAGAGGCTGGCCACTCTGGTGCTGAAGGATGAGAAGAGTAACCTAAAGGCTGTACTCAGTGCTGTCAAAGAGCTGGAGCTGGCCCACCGGTATTTCAGCTACCTTGCCAAGGCTGGTGACAAGATGAGGTTCGACCTAGTGCTTGCCTCCACTGAGGCCAGGCAATGCTCTGACCTGCTGAGTCAGGCCCAGTACCACGTGGCTCGGGCCAGGAAGCAGgacgaggaggagaaggagatccGGGCCAAACAGGATCAGGAGAGGGACTTCCTGCGCCAACAGATGCATAAAGAACAGgaggagaagagaaccAAGCAGGAAGAGGATCAGAAGAAGCTGCTGGAGCAGAGAGCCATGTATGTGGAGAAGACCAAGGGTCTGCTCTCCTTCGCCGATGGAATgaaggaggaaaggaaagagaagaagaaaggtggCGGCCGACGCAAGAAAGGGGGTGACTTTGATGAGTTTGTCAACGAtggctctgatgaggacctgccagtgagaaggaggaagaagaggaagggtGGCAGCGGAAGTGAGGAGGAGGGCcgcaagaagaggaggagATCCAACAAAGGGGGTGACGATGGCAGCGATGACGAGGAAGGAGGCTCACGGCCCAAAAAGCAACGCAAACCCAGAGCGGGCGGCAAGAAGTTCCAAAGGGCCGAGCCTGTGCCACCGTCTCTCAAAGGCAAGATCAAGTCGAAGGCCATCATCTCATCCTCTGACTCTTCATCAGACGAGGATGGACTGAAAATTGCTGAAGACCGAAACCCCAGAGACAGTGGTTCAGGCTCTGATAATGAGAGCAGCCACAAGAAGCGCATCGCCTCCGACAGTGAGTCCGACGGGGGCCGGAACCGCTCTGGCAGCGACGCTGGAAGCCCCCAACGCTCTGGAAACTCGGGTAGCGACTCAGGCAGCGAACGTCCAGTGAAGAGGAAGAGAGTGCAGCAGCAGTCTGACTCAGAGCAGTCTGATAACGAGAGCAAGAGGAGCCGCTCTGGGTCGGAGAACGAGTCCCGGCCAGGCTCACCGGCCGCAGCCTCTGGCTCTGAAGCGGGCTCTCCGGCGGGCTCCCCACGCCGCTCCGACAATGGATCAGAACCAGGGGGCTCTGCCAACGAGGCCTCCAACCACGGCTCTGGCTCTGACAGCGACTGAGGCTTCAAACTCAGAACTGActtttttcaacaaaaaaaaagttattttgacATTGATTTTTGTAGAGGCTTTTTTGTTCCGTCTTGGTTTGTACCATGAAATTGAAATGAGCACATGCAGTGTAGCATTGTGGCCCATAATGTGGGTTGTCTTTAATTGTTTTTTGTCACCAGACTGTTAAGACTTTTGCATTGATGCTGTACCTCGTgtgcttttgttttgttgatgattGATGGGAAATGTGACTTGTAAGTATTCTGGCAGCTGTAACCCATATATTTTATATCTTAAAATGATTGGAAGAGGTGATGTCATGGAAAATTAGTAAATTGGCCCAGATTTGGGACAAATTCtatgtagataataaacaaacacaaaataaatagtttttttttctatTTCTGATGATGAAGCTGCTTGTATGACATTGGAAAACAACTTGACACTTATCTTCtgattatggggtaatgtgtcaATTGTTTTGGCTGCATTTGCCTTGTTTGTGTATCAACATGCCCTCTGCCATTCAGAAAAATATTGTTAGTCATGTTGAGGTGAATAAAATGGCAGATTACAAGTTCA

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0001756 somitogenesis biological_process
GO:0014032 neural crest cell development biological_process
GO:0043473 pigmentation biological_process
GO:0016593 Cdc73/Paf1 complex cellular_component

KEGG:

id description
K15176 CTR9; RNA polymerase-associated protein CTR9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU605971 lncRNA upstream 2522 65831035 ~ 65831237 (+) True G535162
TU605967 lncRNA upstream 5836 65827377 ~ 65827923 (+) True G535158
TU605965 lncRNA upstream 8324 65824997 ~ 65825435 (+) True G535156
TU605964 lncRNA upstream 9075 65824369 ~ 65824684 (+) True G535155
TU605925 lncRNA upstream 36337 65796034 ~ 65797422 (+) False G535118
TU605975 lncRNA downstream 280 65843849 ~ 65844347 (+) True G535166
TU605960 lncRNA downstream 1403 65844972 ~ 65846257 (+) True G535151
TU605987 lncRNA downstream 33099 65876668 ~ 65876921 (+) True G535176
TU605988 lncRNA downstream 33374 65876943 ~ 65877244 (+) True G535177
TU605993 lncRNA downstream 39157 65882726 ~ 65883012 (+) True G535182
XM_021607282.2 mRNA upstream 41079 65774787 ~ 65792680 (+) False LOC110526368
XM_036980723.1 mRNA upstream 41079 65774787 ~ 65792680 (+) False LOC110526368
XM_021607284.2 mRNA upstream 41079 65776853 ~ 65792680 (+) False LOC110526368
XM_021607283.2 mRNA upstream 41079 65777416 ~ 65792680 (+) False LOC110526368
XM_021607285.2 mRNA upstream 41079 65777417 ~ 65792680 (+) True LOC110526368
XM_021607289.2 mRNA downstream 104850 65948419 ~ 66035381 (+) True LOC110526373
XM_021607292.2 mRNA downstream 241550 66085119 ~ 66098315 (+) False LOC110526374
XM_021607293.2 mRNA downstream 241550 66085119 ~ 66098315 (+) False LOC110526374
XM_036980729.1 mRNA downstream 241550 66085119 ~ 66098315 (+) False LOC110526374
XM_036980728.1 mRNA downstream 249113 66092682 ~ 66098315 (+) True LOC110526374
TU605427 other upstream 672429 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 715803 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 986655 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 1057423 64769147 ~ 64776336 (+) False LOC110526344
TU603064 other upstream 2494261 63338236 ~ 63339498 (+) False LOC100750227
TU605959 other downstream 4054 65847623 ~ 65849441 (+) True G535150
TU607370 other downstream 759216 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 1169651 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 1260737 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 1260842 67104411 ~ 67104862 (+) False G537029

Expression Profile