RNA id: XM_021607289.2


Basic Information

Item Value
RNA id XM_021607289.2
length 2833
RNA type mRNA
GC content 0.49
exon number 11
gene id LOC110526373
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65948419 ~ 66035381 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCGAAATGGATAATTGTGGAAATGAATGCACAGTAGCCTATTACACAATTTCACTATCGTATCTCATTGGACAGCGGTTGAACGTATGTTCCACACGCCTTCTGTCGGTCGGTGAAATCGCGACTGGTGTGGATTTGCAAATTAAGCGAAATAGGGAACGTTCGTCACCAAGGCAATCAACTTTACTTTCCAACAACTGagatattttttaaatctttgaCCTACCTATTTGGATTAAATCATAGCCTTCTGCGTGTGAAGACACAGTGCGGATATTGGCTCCGTTGCCCGCGTTTGCAGAACGAATTGCAACGTTGTGGAGTTGTAATTTATCCAGGTTGCTCTCAAGTGACGCGCATAGCACATTTCTATGATTTTGGTGGGCGACAGTCGCACTTGTCCTCTGGTAATCTGAATTTTGTTGGCTGTATGGAGGGATGTCGGGATGGCTTGCACCAGGAGAACCAAAACTTTGGTGTCTACATGCGTGATCTTGAGTGGCATGACCAACATCGTGTGTCTCCTCTATGTTGGATGGGTCACTAATTATATCGCGAATGTATACATCAAAGTCCCTATGCCTGTCCCAGAGAAAAAGTTAGAAGGCGACAAGAAGGGGGAAACCCTACGGATCATAGAAAGACTTGATCGACTTGAGAATGTGGTCAACCAGCACATACAAGAAACCCCCCTGAAAGGAGAGGATGTTCTAGGAGACAAATCGTTTTCTGACTCGTCCCTGTTTGCCCACTGGGGTCAGGAGCTGAGCGCTGACAGCCGCAGGGTGGCCCTGAAGATGTTTCAGTACTACGGCTACAACGGCTACCTCAGCGACCGCCTCTCCCTGGACAGAGCCATCCCAGACCTCAGACCTGATGGGTGTAAAAACATCACGTATCCATCTAACCTCCCTCAAGTTAGCATTGTGTTTATCTTTGTGAACGAGGCCTTGTCCGTCATCCTGCGTTCCATCCACTCTGCCATGCACAGgaccccctcccacctcctcaaaGAGATCATCCTGGTTGACGACAACAGTGACAACGATGAGCTGAAGGAGAAGCTACAGGACTTTGTGTCTGAGACCAACAGCCAGCGTCCCGGCTTCATCAAGGTGGTGCGCCATGATAAACAGGAGGGTCTGATCCGCTCCAGGGTGAGTGGGTGGAGGGCGGCCACCGCTCCGGTTGTGGCCCTGTTCGACGCCCACGTGGAGTTCAACATAGGCTGGGCTGAGCCTGTTCTCATGAGAATTCAGGAGGACAGAACACGCATCATCTCTCCGTCGTTTGATAACATCAAATACGACACGTTTGAGATTGAAGAGTACCCACTGTCTGCTCAGGGCTTCGACTGGGAGCTGTGGTGCCGCTACCTCAACCCACCCAAGGCCTGGTGGCACCAGGCCAACAACAGTGCTCCAATTAGGAGCCCTTCTCTGATTGGCTGCTTCGTGGTGGACAGGCTGTACTTTGAGGAGATTGGCCTGCTTGACGAGGGGATGGAGGTGTATGGGGGCGAGAACGTGGAGCTGGGCGTCAGGGTGTGGCAGTGTGGGGGCAGTGTGGAAGTCCTGCCCTGTGCCCATATCGCCCATATAGAGCGTGCCCACAAGCCCTATACTGAGGACCTGACGTCTCACGTGAGACGGAACGCCCTGAGGGTTGCGGAGGTCTGGATGGACGAGTTTAAGAGCCATGTGTATATGGCCTGGAACATCCCTCAGGAGgACTCAGGAATAGACATTGGCGATATCTCTGAGAGGAAGGCCCTTAGGAAGAGGCTCCAGTGTAAGACGTTTCGGTGGTACCTGGTCAACATCTACCCAGAGATGAGGATGTACACAGACACCATTGCATATGGAGTGCTGAAGAACTCTCTGAAGAGTGAcctgtgtctggaccaggggccGGACACCGACAACGTCCCCATCCTGTACCTCTGTCATGGAATGACACCTCAGAATGTGTACTACACCAGCACTCAGCAGTTACATGTAGGGGTGCTCAGTCCCACCATCGATGACGATGACAACAAGTGCCTGGTGGATGTGAACAGCCGACCGCGCCTCATCGAGTGTAGCTACGCCACAGCCAAGCGCATGAAGCTCCACTGGCTATTTACTCAGGGAGGTTCCGTTCAGAACAGGAAATCAAAGCGATGCCTTGAGCTGGTGGCCAGCAATGACAACGAGTTCGGGTACCAGCTGGCCCTTCACAAATGCACGGGACAGAAATGGTCCATCACAAACACACTGCCTGGCAGTGCCCTATGATGGGCTCTTCTGAGAGAACACTGGAAATACTGTAGCACACTGGACTGGGTGGGGTGCTTATTCTGTTGCTCCTCTGGACTTTCTGTTGTGGATAAAGGAGAATGGTGTATGGTTAATGACAGGCATTGGAGGACCATGATGTCTTTTGTTCACCAGTTGACATCACATGATAAATGTTAAACATTTTCTTTCGCCTATGGATCAGCCATAGATGGTTGATATTGTGCATTATGAGATACTACAACGTTATGAAACATATTTTGTTAAGAGTGTAGTTGGTTTTCTGTTGACTTGAAGGTTGTACTGGGTTCTATATGTTCATTGTTGTACTTGGTAAATAACTGCTACTGTGTAGCAAGCATTAGGAAAAGTTCTCTGCTGTTTTCTTTTCTTCTAGTGTCTCAGGTTTGTAGGATAAGTTTATTATGCGATTAAGCTGTACAGTTTTGGGGAATTGCCAACATGTTGGAATATATATATGGAAATAATATACTATTTTCTAAGTGTAAATATTCAAAATATTTATAATATATGTCAGTAAAAGTACTGATGCTATA

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU606006 lncRNA upstream 18018 65897509 ~ 65930401 (+) True G535194
TU605993 lncRNA upstream 65407 65882726 ~ 65883012 (+) True G535182
TU605988 lncRNA upstream 71175 65876943 ~ 65877244 (+) True G535177
TU605987 lncRNA upstream 71498 65876668 ~ 65876921 (+) True G535176
TU605960 lncRNA upstream 102162 65844972 ~ 65846257 (+) True G535151
TU606182 lncRNA downstream 111204 66146585 ~ 66146855 (+) True G535358
TU607084 lncRNA downstream 221303 66256684 ~ 66261444 (+) True G536174
TU607106 lncRNA downstream 241170 66276551 ~ 66276752 (+) True G536188
TU607111 lncRNA downstream 247696 66283077 ~ 66284653 (+) True G536192
TU607140 lncRNA downstream 297328 66332709 ~ 66334248 (+) True G536218
XM_021607287.2 mRNA upstream 104850 65833759 ~ 65843569 (+) True LOC110526370
XM_021607282.2 mRNA upstream 155739 65774787 ~ 65792680 (+) False LOC110526368
XM_021607292.2 mRNA downstream 49738 66085119 ~ 66098315 (+) False LOC110526374
XM_021607293.2 mRNA downstream 49738 66085119 ~ 66098315 (+) False LOC110526374
XM_036980729.1 mRNA downstream 49738 66085119 ~ 66098315 (+) False LOC110526374
XM_036980728.1 mRNA downstream 57301 66092682 ~ 66098315 (+) True LOC110526374
XM_021607323.2 mRNA downstream 292350 66327731 ~ 66332554 (+) False dkk3a
TU605959 other upstream 98978 65847623 ~ 65849441 (+) True G535150
TU605427 other upstream 787089 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 830463 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 1101315 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 1172083 64769147 ~ 64776336 (+) False LOC110526344
TU607370 other downstream 567404 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 977839 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 1068925 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 1069030 67104411 ~ 67104862 (+) False G537029
TU608056 other downstream 1069030 67104411 ~ 67104908 (+) True G537029

Expression Profile