RNA id: XM_021607293.2


Basic Information

Item Value
RNA id XM_021607293.2
length 2315
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC110526374
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66085119 ~ 66098315 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTACAGCCAAATCTCGCGAGAGCGTCTGAGTAGCAGGGACAACATCACTTTTGCCTTTTAGGGGAAAATGCCAAACCAAGATCCATTATTTTACTAACGGATTGGACTGATCCTTTGAATTCCGTGTATATGTTTTGTATAGGCTATATGCTAGTAATGCGAGAATACTTATAATTTAAAAGATTATGAATGGTGAATAATCCAGGTTGGACGTCTCTGTGAACTGGTGATGGCAGCACGTCCACAGTCATATGATAGCAACTCAAGTGACACTGAGAATTGGGAACGAAAAACAACCGACCTCGCAAACTCTGCAAGCACTCGAGCGCTCAGTCGTGTGCATCTCGACTGGAGGCAGACCTGGTGAAGATGAGCCTGCATGGTGCTAGCGGGGGCAATGACCGCTCACGCGACCGCCGCCGCTCCAGCGACCGCTCCCGAGACTCGTCGCACGAGAGGGGAGAGGGCCAGCTCACCCCTTGCATCAGAAATGTCACCTCGCCTACCCGCCAGCACAACAGTGaccGTGAGAGGGACGGTGGCTCCAGGCCCAGCAGCCCCCGTCCTCAGAGGATTTCCCCCAGCGGCTCCAGTAGCAGCGGGCTGGTCAGCAGCCGTAACAGCAGCCTGTCCAGCACTGAGGGCTGCTTTAAGAGCCTGGGGGTGGGAGAGATGGTGTTTGTCTATGAGAATAGCAAGGAGGGACTGGGCACGGGCCTGGGTACCCGCAGCATCCGGACCTCAGGCTCCGAGAGGGTCACTCTTATAGTAGATAACACACGGTTCGTGGTGGACCCTTCAATCTTCACAgcacagcccaacaccatgctgGGCAGAATGTTTGGATCTGGAAGGGAACACAATTTCACACGGCCCAATGAAAAAGGAGAGTATGAAGTCGCCGAAGGCATCAGCTCTACGGTGTTCCGAGCCATCCTGGATTACTACAAGTCTGGAATAATCCGTTGCCCCGATGGAATCTCCATCCCTGAGCTGAGGGAGGCATGTGACTATCTGTGCATCACCTTTGACTACAGCACCATCAAGTGCAGAGACCTCAGTGCCCTCATGCATGAGCTATCTAACGATGGTGCCCGGCGTCAGTTTGAGTTCTACCTGGAGGAAATGGTTGTGCCTCTGATGGTGGCCAGCGcccagagtggagagagagaatgtcacATCGTGGTGCTCACTGATGATGACGTAGTGGACTGGGACGAAGAGTACCCACCACAGATGGGAGAAGAGTACTCACAGATAATATACAGCACAAAACTATACCGGTTCTTCAAGTATATAGAAAATCGAGATGTTGCCAAATCAGTTTTaaaggagagaggactgaagaAAATAAGATTAGGGATTGAAGGTTACCCCACGTATAAAGAGAAGGTGAAGAAGCGTCCTGGTGGCCGTCCTGAGGTCATCTACAACTACGTCCAGAGGCCCTTCATCCGCATGTcctgggagaaggaggagggcaaGAGCCGCCATGTTGACTTCCAGTGTGTCAAAAGCAAGTCCATCACTAACCTGGCTGCAGCTGCTGCAGATATCCCCCAGGACCAGCTGGTCAACATGCACCCTGGCCCTCAGGTGGACGAGCTGGACATCCTCCCTAACCAGTCCCCCAGTGGACCCCAGTACAGCTACAACAACGATGCTGGTGACCCAGATGCCCCCTCTCCTGCAGTCTGAGGACTGCCCCCTCCCTGACACCTCCCTCCCCAGCGTACTGCAGCATGGAGCAAGAGGGGGATCAATATAAAGGGGATCATAACCATATTGCCTTGGCACCTCCTCCACAGCCTTAGAGCCTCAAGGATCTGGTCGACTGGTAAAAACCCTATAAGGGACAAGACTGGCAAAAGGGCATATCTCtttatttctttaaaaaaatacttgACCAAAGGAATTTATTTTTCTGTTAATTGTTTGAAATTTTTTTAGCAAACCCAATTATTTTGTAGCTATTATTActaatatattattatttacaatggttATCGGGCTGTGCACTGTGTGGTGTTACTGTGTCCTCCCCCTGAGTTTTATTTCACGTGTGGTTCTGGGTATACTTCCTGGATGGCAAGACTAGTGAATACTGTATATTTTTGGGGAACAGGTGCAGATCGTGATGCCTGGCCATGGAGAAAATCCTCTGATTTCATCACCATTCAGTGGAAATTACTGTTGAATTCCCCTCAGATATACTTTGAATCATGTAATGGTTGTGTTGGTTGACATCATAGGATTGGTAATGGGATTCTGTGCTCCCTGGATATTCAGCATGACATAAAGACATTAAAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU606006 lncRNA upstream 154718 65897509 ~ 65930401 (+) True G535194
TU605993 lncRNA upstream 202107 65882726 ~ 65883012 (+) True G535182
TU605988 lncRNA upstream 207875 65876943 ~ 65877244 (+) True G535177
TU605987 lncRNA upstream 208198 65876668 ~ 65876921 (+) True G535176
TU605960 lncRNA upstream 238862 65844972 ~ 65846257 (+) True G535151
TU606182 lncRNA downstream 48270 66146585 ~ 66146855 (+) True G535358
TU607084 lncRNA downstream 158369 66256684 ~ 66261444 (+) True G536174
TU607106 lncRNA downstream 178236 66276551 ~ 66276752 (+) True G536188
TU607111 lncRNA downstream 184762 66283077 ~ 66284653 (+) True G536192
TU607140 lncRNA downstream 234394 66332709 ~ 66334248 (+) True G536218
XM_021607289.2 mRNA upstream 49738 65948419 ~ 66035381 (+) True LOC110526373
XM_021607287.2 mRNA upstream 241550 65833759 ~ 65843569 (+) True LOC110526370
XM_021607284.2 mRNA upstream 292439 65776853 ~ 65792680 (+) False LOC110526368
XM_021607323.2 mRNA downstream 229416 66327731 ~ 66332554 (+) False dkk3a
XM_021607322.2 mRNA downstream 229422 66327737 ~ 66332554 (+) True dkk3a
XM_021607328.2 mRNA downstream 362408 66460723 ~ 66500000 (+) False pkd1l2a
XM_021607330.2 mRNA downstream 367444 66465759 ~ 66500000 (+) False pkd1l2a
XM_021607331.2 mRNA downstream 372494 66470809 ~ 66500000 (+) True pkd1l2a
TU605959 other upstream 235678 65847623 ~ 65849441 (+) True G535150
TU605427 other upstream 923789 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 967163 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 1238015 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 1308783 64769147 ~ 64776336 (+) False LOC110526344
TU607370 other downstream 504470 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 914905 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 1005991 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 1006096 67104411 ~ 67104862 (+) False G537029
TU608056 other downstream 1006096 67104411 ~ 67104908 (+) True G537029

Expression Profile