RNA id: XM_021607294.2


Basic Information

Item Value
RNA id XM_021607294.2
length 2177
RNA type mRNA
GC content 0.45
exon number 1
gene id LOC110526375
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66179626 ~ 66181802 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGGTTGTACGCACAGCGCGCAAAGGGCGCAGTTGAGTGTGCTTACTTGGACACAGAGCAAACAGCGACAGCGGCTACATGGACTTCCCATCCTCTACCAACTACTTGAGGGAACGCGTAAAATGAACAATTTATATCAGAATGTTGGATGTTGCTTTATTTTCTAACGTATGTGGATGTACAATTAATTTAGCACTTGCATGACAAAACTCTGTTCTAATCCGTTTCCCTCCTCAAAAAACGGAATTTGAATGGTATTCTAAAGGGGAATAACGTTTCGTTTTAGTTTATGATGGAGTCCAAGGAAAGTAAGATATCTGTGTGGGTTTGCCGAGAAGAGAAGCTTGTCTCCGGACTGTCAAAGCGCACAACATGTGCAGATGTGGTCAATGTGCTCCTAGAGGATCAAAACTTGAAACAACGTGTCTCTGCAGCTATGCTCTCGGGATCAACCCAGTCCTATTGCATCGTAGAAAAATGGAGAGGATCTGAAAGAATTTTGCCGAATAAAACAAAGATCCTTCGACTTTGGGGCGCgtggggagaggagcaggagaacgTGCGGTTTGTGTTGGTTAAAAATGAGGCTTCTTTGGCTAACCATGGACCCCGGAGCGCAGAGGCGCGTGTGGTGCTCAGTAAGGAGAGCCCGTGCATTTACAAGGGGACAGCAAGAGCCACCATGGGCTTCTCACCTGAGAAACAACGTCGGATTGTCAGGAAAGCTTTCAGAAAGTtggataaaataaataacaagagGGCGCAAACCGTGTCCAAGGATGCGCCCACTGGGGAGAAAATGGAAACTTTGGTTCACTTGGTCATATCCCAGGACCACACAATCCGCCAACAGATCCAGAGAATTAAAGAACTGGACAGAGCGATAGAAAGGTATGAAGCTAAAGTTCATTTTGACAGAATGAAAATGCATGGGATCAATTACGTGCAGGACACATACTTAGTGGATGCGCATTCTGACGGGCTCTCCAAGCAGGAGGGTGAGAAGCCGTGCTCGGCGGAGGCTGTTGCCCAGTTCGAGGAGTATGCCCAACGGTGTGAGGAGGTGATTCGACTTCAGGATGAATTGGCTGAGCACGAAGCGCTCATGGACAGCATTACTGTGGAGATCCAAGAGGAACTTAACCAGAGGTGGATGGAGCGAAGGCAAGAGGAGCTGTCAAGTAAAAAGGTGGAACTCAGCGCGGGAGAGACCGCTATGTGGGTATCAACGGCCCATGCGACACACACTGAAACTTTAGCCCTCGAGGCTGATACATCATTAGAGAACGATTTGtttctggaggaggagaggatcaaAACGCAGCTGGATACTAGTTTATACATTGGACTGCGCTTGAACACGGATTTGGAGGCTATTAGGAGTGATTTGAATACAACCCAGGATATTTGGGAGGTGAAAGAAAAGGAGATACGGGATTTGCTGGAGAAAGTGAACTCATTGTATATAGAGGATGACGAGACACAAGGCGAGGACAATGACCGCAACTCTGTGGTTACTGAGGCAGCAATGATGCATCCCCTGGAGACGAAAAGCGAGTGGGTGGAGCAAGCCAGGGGGCTTTCAAAGACTTGCAATGCCAACGATGACGACTCAGACACTGGCCTGAGCTCCATGCACAGTCAGGACTCGGATAACCCACCTGTGTGCGAGTCATTGGTATGAATTGCCAGGATGCTTCAAATTCTATTGACAATTATGGGACATAATTACTGTATGTCTAAAAACTCAGGGATCTGACAGAGTTTATCCCCAAAATGAACAACACAATATAATGTATTCAAAAATGTCCCAAAATGTATGGACTATTATGTAGCATACCCCAATACATAGTCAAAATACTTGGTCACTTAAATATATGCAATTATAGCTATTCACATATTTTGCTGCCTTTTTTCAATATAAAACCCTTTGACCTGTGCCAGGATATGACACACCTCTGTGTTATCGTGACAGGTTATTATTGATTAAGGAATGGAAATCTTTGTGTTTGCAAGACTAAACAGACTTAAAATAGACCATGCTAAATGTAACACTGATCAAGTGCTAATTCTAGTTGGAAGTGAAGTAGTGCTCTGCACTTATCCAATGTGATTTTGTGGACACACTGATGAGTCTTAAATATGAAGGGTGTATGACATACTAAAATAAAGATAAG

Function

GO: NA

KEGG:

id description
K09856 RASSF9_10; Ras association domain-containing protein 9/10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU607044 lncRNA downstream 8582 66170839 ~ 66171044 (-) True G536136
TU607037 lncRNA downstream 15802 66163405 ~ 66163824 (-) True G536129
TU607035 lncRNA downstream 19394 66159912 ~ 66160232 (-) True G536127
TU607033 lncRNA downstream 20809 66158609 ~ 66158817 (-) True G536125
TU607016 lncRNA downstream 41693 66137696 ~ 66137933 (-) True G536108
TU607077 lncRNA upstream 71137 66252939 ~ 66253159 (-) True G536169
TU607205 lncRNA upstream 95400 66277202 ~ 66281619 (-) True LOC110526379
TU607240 lncRNA upstream 145382 66327184 ~ 66327408 (-) True G536288
TU607242 lncRNA upstream 146800 66328602 ~ 66329309 (-) True G536290
TU607253 lncRNA upstream 179056 66360858 ~ 66368794 (-) True LOC110526383
XM_036980725.1 mRNA downstream 57487 66098317 ~ 66122139 (-) False LOC100499618
XM_036980727.1 mRNA downstream 57487 66098317 ~ 66122139 (-) True LOC100499618
XM_036980726.1 mRNA downstream 67820 66098317 ~ 66111806 (-) False LOC100499618
XM_036981772.1 mRNA downstream 328544 65844958 ~ 65851082 (-) True LOC110526372
XM_021608121.2 mRNA downstream 351549 65826929 ~ 65828077 (-) True LOC110526945
XM_021607296.2 mRNA upstream 2425 66184227 ~ 66252048 (-) False LOC110526376
XM_036980730.1 mRNA upstream 5189 66186991 ~ 66236457 (-) False LOC110526376
XM_021607298.2 mRNA upstream 5189 66186991 ~ 66252047 (-) False LOC110526376
XM_021607299.2 mRNA upstream 5189 66186991 ~ 66252047 (-) False LOC110526376
XM_036980731.1 mRNA upstream 5189 66186991 ~ 66252047 (-) False LOC110526376
TU606664 other downstream 553654 65623989 ~ 65625972 (-) True LOC110526365
TU605344 other downstream 1294094 64855495 ~ 64885532 (-) True G534603
TU605061 other downstream 1564830 64578798 ~ 64614796 (-) True G534349
TU604906 other downstream 1680012 64498453 ~ 64499614 (-) True G534201
TU604146 other downstream 2354101 63823899 ~ 63825525 (-) False igdcc3
TU607101 other upstream 80684 66262486 ~ 66276289 (-) True G536183
TU607202 other upstream 95400 66277202 ~ 66281619 (-) False LOC110526379
TU607649 other upstream 318586 66500388 ~ 66505025 (-) True LOC110526387
TU607613 other upstream 367565 66549367 ~ 66549974 (-) True G536630
TU609527 other upstream 1960449 68142251 ~ 68144907 (-) True G538277

Expression Profile