RNA id: XM_036980730.1


Basic Information

Item Value
RNA id XM_036980730.1
length 1714
RNA type mRNA
GC content 0.50
exon number 14
gene id LOC110526376
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66184227 ~ 66252048 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgaACACAACCTTTTGATCTATCCCTACTGTGCTCCAGGCTTCGGCTTGGAGATCCCAAGCACCACCATGGACCCCAGCAGCTGGAGCGGCAGCGAGAGCCCTGCCGAGGACATGGAGAGGATGAGCGATTCGGCAGACAAGCCCCTGGACAATGACGCCGAGGGGGTGTGGAGCCCCGACATCGAGCAGAGCTTTCAGGAGGCGCTGGCCATATATCCCCCCTGTGGGCGCAGGAAGATCATTCTATCTGACGAGGGAAAGATGTACGGTCGGAATGAGCTGATAGCCCGATACATTAAGCTTCGGACTGGAAAGACGAGGACGAGGAAGCAGGTGTCTAGTCACATACAGGTCTTAGCAAGAAAGAAAGTTCGAGAAATCTCAGCTGCCATCAAGGTGTCTAGTCACATTCAGGTTCTTGCCAGAAGGAAATCTCGTGAGTTTCATTCCAAGCTAAAGGTTACAAGCATGGATCAGACCGTGAAGGACAAAGCCCTCCAAAGCATGGCCTCCATGTCCTCGGCTCAGATCGTCTCTGCCACCGCCATCCACAACAAGCTGGGCCTGCCAGGCATCCCGCGCCCAGCCTTCCCCGGAGCGGCAGGGTTTTGGCAGGGCATGATATCAACAGCCCAACCTGGATCATCACAAGACATCAAGCCATTCACCCAACAAGCATATCCCATACAGCCGGGAGTAACAACGATTTCCAGCTTTGAGCCCACAtcagccccagccccaacagtcccAGCGTGGCATGGCCGCTCCATTGGGACATCCAAGCTCCGGCTGGTGGAGTTCTCTGCCTTCCTGGAGCAGCAGAGAGACCAAGACTCTTACAACAAGCACCTCTTTGTGCACATCGGACAGACGAACCACTCCTACAGCGATGCCTTGCTGGAGTCAGTGGACATTCGTCAGATTTATGACAAATTCCCTGAAAAGAAAGGAGGACTGAAGGAGCTCTTTGGCAAGGGTCCCCAGAATTCCTTCTTCCTCATAAAATTTTGGGCTGACTTGAACTGCAACATTCAGGATGAAGTGGGGGCTTTCTATggagtgaccagtcagtatgagagCTCCGAGAACATGACAATCACCTGCTCAACTAAGGTGTGCTCCTTTGGCAAGCAGGTCGTCGAGAAGGTGGAGacgGAGTATGCCCGGTTTGAGAACGGACGCTTTGTGTACAGGATAAGCCGGTCTCCCATGTGTGAATACATGATCAACTTTATCCACAAGCTCAAACACCTGCCTGAAAAATACATGATGAACAGTGTCCTGGAGAACTTCACCATTCTTTTGGTGGtgacgaacagggacacacaggaGACTCTGCTGTGTATGGCGTGTGTGTTTGAGGTGTCGAACAGCGAGCACGGTGCCCAGCATCATATCTACCGACTGGTGAAGGAATGAGACTCCTGAACCCCCTGAATCCTCCCTTTACATAGACTAAAGAACCTCAAAACAAATTGACAGTGCCTCTAGCTGAAAATCACACATGCACTGCTTTTCGGTCACATTTTGGGTGAAGCCTATTGTTAGTCATTTCTTTGTATATTAATGTATGTATTTGATGTTTGACTGCAGCTGTGAATTGCGGTACAGTTGTTCTATGTTTTGATACAGGAGAAATTCTTCATTTTAAAGGATGGCGAGTCAATCTTTGTTTGTAGGATGTacatataaaagaggcagtataTAAGGaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU607044 lncRNA downstream 15947 66170839 ~ 66171044 (-) True G536136
TU607037 lncRNA downstream 23167 66163405 ~ 66163824 (-) True G536129
TU607035 lncRNA downstream 26759 66159912 ~ 66160232 (-) True G536127
TU607033 lncRNA downstream 28174 66158609 ~ 66158817 (-) True G536125
TU607016 lncRNA downstream 49058 66137696 ~ 66137933 (-) True G536108
TU607077 lncRNA upstream 16482 66252939 ~ 66253159 (-) True G536169
TU607205 lncRNA upstream 40745 66277202 ~ 66281619 (-) True LOC110526379
TU607240 lncRNA upstream 90727 66327184 ~ 66327408 (-) True G536288
TU607242 lncRNA upstream 92145 66328602 ~ 66329309 (-) True G536290
TU607253 lncRNA upstream 124401 66360858 ~ 66368794 (-) True LOC110526383
XM_021607294.2 mRNA downstream 5189 66179626 ~ 66181802 (-) True LOC110526375
XM_036980725.1 mRNA downstream 64852 66098317 ~ 66122139 (-) False LOC100499618
XM_036980727.1 mRNA downstream 64852 66098317 ~ 66122139 (-) True LOC100499618
XM_036980726.1 mRNA downstream 75185 66098317 ~ 66111806 (-) False LOC100499618
XM_036981772.1 mRNA downstream 335909 65844958 ~ 65851082 (-) True LOC110526372
XM_021607302.2 mRNA upstream 23246 66259703 ~ 66271099 (-) False LOC110526378
XM_021607301.2 mRNA upstream 23246 66259703 ~ 66271100 (-) True LOC110526378
XM_021607303.2 mRNA upstream 40705 66277162 ~ 66326558 (-) False LOC110526379
XM_021607305.2 mRNA upstream 40705 66277162 ~ 66326558 (-) False LOC110526379
XM_021607306.2 mRNA upstream 40705 66277162 ~ 66326558 (-) False LOC110526379
TU606664 other downstream 561019 65623989 ~ 65625972 (-) True LOC110526365
TU605344 other downstream 1301459 64855495 ~ 64885532 (-) True G534603
TU605061 other downstream 1572195 64578798 ~ 64614796 (-) True G534349
TU604906 other downstream 1687377 64498453 ~ 64499614 (-) True G534201
TU604146 other downstream 2361466 63823899 ~ 63825525 (-) False igdcc3
TU607101 other upstream 26029 66262486 ~ 66276289 (-) True G536183
TU607202 other upstream 40745 66277202 ~ 66281619 (-) False LOC110526379
TU607649 other upstream 263931 66500388 ~ 66505025 (-) True LOC110526387
TU607613 other upstream 312910 66549367 ~ 66549974 (-) True G536630
TU609527 other upstream 1905794 68142251 ~ 68144907 (-) True G538277

Expression Profile