RNA id: TU607205


Basic Information

Item Value
RNA id TU607205
length 4114
lncRNA type sense_over
GC content 0.44
exon number 2
gene id LOC110526379
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66277162 ~ 66326558 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtctggtctggtctggtctggtctggtctggtctgtgagTGATGTGGACTATCACTTTTGCTTTCATCATTCTGACCTTTATtcttactctctttctcccttcctacctctcgtcctccctgtcttcctcctgTCTTTTCCTCCTTGCTGCATGTCAGAGGACGGTGGGGAAGGTGTCTCTGGCTATAGCAGCCAGGGCTGAGACGCTGGTCACCCTCTATGAGACTGACCACAGGCCTAAAGCCTCCTCCCCCTGTTCACCCCCAGCCTCTGCGCCTCTGTCTCCGGTAAGCATGTCTGGCTGAGCATGCAGCCTCTCAGACTGTACCAGCCTTGAACAACAGCCCTTATCTAGGTGAAGAACATAGACTATGTCCCAGGCCCTGGCTCTGAGTCAGATGAAGTGGGATTGTGTAAAATAAGGATTGGGATGATTATTCTTTGCAGGACTCTATGACTCTTTATGCTTTGTGAACTAAAGGCCAAACTCGGGCCATAAGGCCTTTTAGGGTCAAAGTTGTGGAATCTGACACAAGTGCATCACTCCCTTATTATCGTCATTTACTGGGCTGACAGCGTTTGTAgcactgtctgcctctctgttctgTTTCCCAGGGTTCCTTGCGGAGGGAGTTCCCCGGGTCTGGTGACCAGTGTCACTCCTGTCAGAAGCGTGTGTACGTGGTGGAAAGGATCAGTGCTGAGGGACTTTATTTCCACAGGGAATGCTTTCGCTGTGACACCTGTGGCTCCATCCTGCGCCAGGGAGGCCATGCCTTCGACTCTGAGCAGGGCAAGTTGTACTGCAAGCTGCACTTCACACAACGTAAAAATGGAATGAACCATCGGAGGACATTCAATTCACATCTGGTAATTGTTCTGGATCATTCAATCAGCCACTTGCCATTGTCATTTTGATGTTAATTTGTGGGACATCTTTGTGACTAAATGGGTCTTTCCCTCAGGGAGCCGGGGTTCAGGAGGGATCAGGGACACAGACTCCTGACTGTGACACAACAGAAGGACGGCAGAGCCAGTCACCAGGTACCATCAGCTCCCGCCTGAGGAAGTGCCTGAGCTGGCCCCTGAGTGTGACCCGGGCTGTGTGTGACTCCCCCCGCCTCCTGTCTCGCTGGGTGCATGGTACGGCCCATGCTGTGGGCCTCCACTTTAGAGCCAATGTGCAGGACTATGTCTTCCTGTATGAGCTGCTGAGCCTGGGAGTGCCCCTGCTGTTCATGCTCCAGGAGGTGCTGCTGCAGATGTACTCTGAAACCGGGCCTGTCTCCCAGTCCATCCAGCCCCTACTGCTGTGGCTGGAGGAACACCTAGGCCATAGGCTCATGTAGAGGCCCACCAGGGAAGgaagcctaatcctaaccctaaccctaaccctatccctatcctaACCTTCATGCAATAGGGTCTGAAGCCTGGCCGAACATTAACTGGCGTATCTTGCATTTGTGCCATGTCATATGGTGGCAAGTACCGTTTGACCATGTGTACAAGCACCTTGTTAATATTTTCTCACAGAATATGTTGCTGTCAGTGCATTAGATCTAGTCCTACACCAACCAAAGAACAAGTAACATTTCCCAAGTGGTAGCTTGGTTTGTGATACGTGCGATGTTTCATGAACATGACATTTTTCTTTATGATGAGGGGTAATGTGCTGTACATGGTTTCATGGTGGTATAAATCATTCACGGTATGTGGTTGATATGACTGCTGAAATCATCCAATCTATATTGCTCTAGAGTTGAGTCTTTCAACAACTGGCTGTCAAAGTCGAGCCAGTTTTTACATGGCTTAACTCAGGTTATGACAGATTTTTTTGTGTGGAAAAAGTAATCTAAATGAAAAGACTGACTTGAAGCACTTTAACTTGGGGAGCTGCCTTGACCTGGGGCTGATGCCTGATGAATGGTGTGGTAGTTAATGGCTGCCTAATGGCTGTCCAGGCCTTGGATAATGACTAGTGCTGATGCTGCACGTTTACTAAACCCTGCTGAACTCACAGGTCAGGGTCGGGGTCTGGGTCGGGGGCCAACGTGGATCTGTGCTCGACAAGGTTTTCTCATCTTTTTTTCAATTTCAATATTGTTTGACACAAAttaaaatgtttatgtttttATTGTAAGATCTCGTATGACACCGTGACCATAGTGTACTTTCGCAACACATTATGATAACTTTTATTGCTTTATTTTATGGCCCAGTGCCTCCAGTATTTTTGTGCATTGTCCGTTGTACTTAAAAAGGGGAAAAGGTTTCATGGACATGGGCTTTGGTTTACTACAGTTCATGGACTGTTTAATGCTTACTCATTGCTGCCACCTGTTGGTGAAACAGATGCAAGGCCAAATTCAATTTACTGTATGAAAAGGTGGAATAAGAGACAATCTTCTAAAGAGTTGTTGTATGCTTGTAATAGAGgaggtttttcttcatttttattaTTTGTACAGGTCTATTTCACTTCAATATGTTTTTCAGAATGTTAAGAATATTGCTGAATTGAATTGTTCAGAAGGACTGAATCAGACATGATAACACAGGCTTTGTTTGAATGCTGTGGTGTGTTTGTGCTTGCCACTCATCTCACTGTTAATAACCATGTCAAGTATGATAGCAGGATCTCAGCTTTATTACCAATACAAATTCCAAAGATACAGTTGGTGCACTTTAAAAATGACAAGTGTTTTCAGCCCTAACCAGAAGTTACATCATTCATGCAGTACACTGTACAGTGCTAAATGGCATGTTGTTGAATAGCACAATCTCATGTTATCTAACAATTACAAAGTTTCTATGCATTGTAACTGGATTTGATCCTCCCTCTGATTTTTCTCTATATTCTAACCTACTATATTTCCTTCCTTTCATTTCTATTCTTGTTCACTTGGAAGTCTATTTTCAACTTTCTGATGATGGGCCTCCTGATTGGTTAGGAGACATGCCATTCTGAAGGTGATCACCTGCATGGTCACATGGTTTTGTGAACAATGTTTTGGAGTGGATGCTTTGTTAGATTAGTCCAATTACTGTCAGCATTTCCACACACAAGTAAAAAATGCTTCTAACCCCTGTGTTTGAGCTACCGACAGCAGTTTTTAGCATAGGATTTTTCAATTTCGTCTGCATCCGCCATTATTAGATCCCAAAAACGATTCTTCTCACAAAAATGTCTAatctacaaactattatgaccgtACTCTGAAAGGCTGAGATTCTCACAAACACGTAAATGTAACTGGTCTGCTCTATGACGCTCATAAGCCAATCAAGAGTTGTTAGGAGGTAAGAAGTTCTTCTTAGTAGATCATAGGAAATctcaggacatagtgtctataaactcacatagttgctgtcacaaactccatactccacacagttgtcactgactagttggatgtTAATTTCCCACTAAGCAAACCATTTTTGAATTTACAATTGTAATTATTATATACTCATTTTTAATCAGCTTTTCTGGGGTCTGGACCTTGTTTTTTTTATAgacatttgtcaataaaactcatgaatgcaactgtttatgtcaaatgttatgttctacttgtagccctggttgtcctgaaaataaaATGGTAAAACAGGTCAATGTGAGGCTAAATATGTGGGATTCCCTGGAACCTATGAATTTATTAAACTACTAATGTCTGTGTCCAGCACCCCCAGCAGAACCATAACTACAGCACACACTTGTTATAGGTTGAAACACATCATAATACCATGATGTTCAAAGTCACACCTTCTAAGAGACTGTCTTTTCAGTGTCTGCATGCATAACACGGAACCTGTGGTGTTTGGACTGCATTGGTCTTCCCGAGTGCAGGTTGAACGATTGACAGACAGCTTTCTGTCATGTAAAGGCATGCCACTTTTTCTCCCATCTTTtgccatctttctttctctcttccagaCGCTGTCACCCAGGATAACTTTTTCTTGACCCACACAAACAAAGGGAACGAATCTCCCAACAGGTTCATAGCTCATGTTGTCTTAAATGAATACATTGAACAATGTTTTATGGGACTTCAAATGCAGCCTGCTTTTCTCATGGAGATTCTGTGTTGCTTTATGTATGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU607077 lncRNA downstream 24043 66252939 ~ 66253159 (-) True G536169
TU607044 lncRNA downstream 106158 66170839 ~ 66171044 (-) True G536136
TU607037 lncRNA downstream 113378 66163405 ~ 66163824 (-) True G536129
TU607035 lncRNA downstream 116970 66159912 ~ 66160232 (-) True G536127
TU607033 lncRNA downstream 118385 66158609 ~ 66158817 (-) True G536125
TU607240 lncRNA upstream 45565 66327184 ~ 66327408 (-) True G536288
TU607242 lncRNA upstream 46983 66328602 ~ 66329309 (-) True G536290
TU607253 lncRNA upstream 79239 66360858 ~ 66368794 (-) True LOC110526383
TU607608 lncRNA upstream 120152 66401771 ~ 66405722 (-) True LOC110526384
TU607615 lncRNA upstream 131677 66413296 ~ 66464264 (-) True G536632
XM_021607301.2 mRNA downstream 6102 66259703 ~ 66271100 (-) True LOC110526378
XM_021607302.2 mRNA downstream 6103 66259703 ~ 66271099 (-) False LOC110526378
XM_021607295.2 mRNA downstream 25154 66186991 ~ 66252048 (-) False LOC110526376
XM_021607297.2 mRNA downstream 25154 66186991 ~ 66252048 (-) True LOC110526376
XM_021607298.2 mRNA downstream 25155 66186991 ~ 66252047 (-) False LOC110526376
XR_005052198.1 mRNA upstream 2206 66283825 ~ 66326558 (-) False LOC110526379
XM_036980736.1 mRNA upstream 51054 66332673 ~ 66354875 (-) False usp47
XM_036980737.1 mRNA upstream 51054 66332673 ~ 66354875 (-) False usp47
XM_036980733.1 mRNA upstream 51054 66332673 ~ 66354876 (-) False usp47
XM_036980734.1 mRNA upstream 51054 66332673 ~ 66354876 (-) False usp47
TU607101 other downstream 913 66262486 ~ 66276289 (-) True G536183
TU606664 other downstream 651230 65623989 ~ 65625972 (-) True LOC110526365
TU605344 other downstream 1391670 64855495 ~ 64885532 (-) True G534603
TU605061 other downstream 1662406 64578798 ~ 64614796 (-) True G534349
TU604906 other downstream 1777588 64498453 ~ 64499614 (-) True G534201
TU607649 other upstream 218769 66500388 ~ 66505025 (-) True LOC110526387
TU607613 other upstream 267748 66549367 ~ 66549974 (-) True G536630
TU609527 other upstream 1860632 68142251 ~ 68144907 (-) True G538277
TU609730 other upstream 2228696 68510315 ~ 68516681 (-) True G538460
TU610131 other upstream 2525794 68807413 ~ 68811230 (-) True LOC110526447

Expression Profile