RNA id: XM_021607322.2


Basic Information

Item Value
RNA id XM_021607322.2
length 1757
RNA type mRNA
GC content 0.47
exon number 8
gene id dkk3a
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66327731 ~ 66332554 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCCTCCATTCGCCGCATCCTCCCACAGCCTGCTGCCGCTGGCCCAGAATAGGCTCGCCTCTGGCGCCACTATGAAAGAGTGCAGCAGCAGCACCGCACACACCCAATGCGCAGAGGCAACGTCCAAAGAACCTAATTCATTCTGGTGCCTTTTCGTGCAGCAGCAAGGATGTTGTATTTCTCTCTTCTAACCCTGGGCCTAACGTCTATCCATGGCATCCTCCTTCCTGAATCTGCCAGGCCCGTGGATTTGGACATCAACCAGATCCTTGGGGATAATATGGCACAAGGACACACGACATTAAACGACATGTTTGAGGAGGTAGAGCAACTGATGGAGGACACGCATAATAAACTGGATGACTCGGTGCACCAGATGGACAATCAGAGTGCCAAGTCCAGCTTGCATCCCAATAACCTTCCCTCAAATTATCACAACGATAGCACTTCTGAGAGTGTGGTTGAAAACCAATCCATTCACACCATAGAGACAGTACACAAGgagacagacaacagaacagaagagacCCACATCACCAGAACGGTTATCCAGTCCAGTGGCAAGGAAAATAATATTAATCATGAGTGTATCATTGATGAGGATTGTGAGAAGGGGAAATATTGCCGGTATGAGACCCACCGATCCAAGTGTCTAACCTGCAAAGCCCTCGACGTGccctgcaAAAAGAATGAGGAGTGCTGTAcaggacagctgtgtgtgtggggccaGTGCAGCCAGAACGCCACTAAGGGGGAAGCTGGCAGCATCTGCCAATACCAGAACGACTGCAGCCCAGACCTCTGTTGTGCTTTCCATAAAGCCCTGCAGTTCCCTGTGTGCACGGCCAAGCCAATAGAGCGTGAGCGCTGTCATGGCTCCCCCAACCACCTTATGGAGCTGCTGTCCTGGGACATAGAGGGCCAGGGATCAAGGGAACACTGCCCCTGTGCTGGGGACCTCCAGTGCCAACATCTCGGCCGAGGCTCCCTGTGTCTGAAAAGACAGAACTCGAGTGAAGAGGACCTGACAGACACACTTTATTCAGAAATTGACTATATTGTCTAGGAGTAACCATGCAGCTCAACCTTTTCAGGCCTGTAGACAATCAGATAGAGGGGTCTCCAGTGATTTCAGCCTAGAAAATGAAGTTGCTCACCGTCTCACAAGGCTTACATGTAAGATTCTTCCATCTATAAGCTTGTCATTGTTTATTCAAGCCATTGCAGTTCTCTCTATCTGCTCGAAGTTAACCAAAGCTCTAGATATTACGTAGTGCATAACACCATTATGTATTAGATGAAATGTACATTTTTGGGAAATCCCCAATTCCTAGACGTTTACGCTGTTCAAAGGTAGTGTGTATGATGACTACACTCCAATACCGCAATAAGAGTTCGTGTTTTAACAAATATGtaccctctcctgctctctgatGTCTCACTTATGTGCCTACCCTCAGGATGGATAGTTTGCTGGAGATGCACTGTTGAGGCCCTTTGCTCAAAGGAATTAAGTCAAGTTAGGGACGAAGAAAGAATAAACACAATGCACTGTATACATGTGAAGTAGCTTGCTTAGTCCTGGTTTttgttttaaaatgtgttttaaacAAGAACAGATGAAATTTCTGAATATATGGAGCACTTTGACAGGTCAGCTCATCATGCTCACAACTTGGTAATGGAAACTATAACCCAGACACATGCAGCTTGCACAACTTTCGCTCATAAGAAAATAAAATGCTTTGAAAATGTA

Function

GO:      GO:0044699

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU607111 lncRNA upstream 43084 66283077 ~ 66284653 (+) True G536192
TU607106 lncRNA upstream 50985 66276551 ~ 66276752 (+) True G536188
TU607084 lncRNA upstream 66293 66256684 ~ 66261444 (+) True G536174
TU606182 lncRNA upstream 180882 66146585 ~ 66146855 (+) True G535358
TU606006 lncRNA upstream 397336 65897509 ~ 65930401 (+) True G535194
TU607140 lncRNA downstream 155 66332709 ~ 66334248 (+) True G536218
TU607142 lncRNA downstream 7559 66340113 ~ 66340522 (+) True G536220
TU607287 lncRNA downstream 81862 66414416 ~ 66437171 (+) True G536329
TU607306 lncRNA downstream 114451 66447005 ~ 66449264 (+) True G536348
TU607333 lncRNA downstream 156011 66488565 ~ 66492463 (+) True G536371
XM_021607292.2 mRNA upstream 229422 66085119 ~ 66098315 (+) False LOC110526374
XM_021607293.2 mRNA upstream 229422 66085119 ~ 66098315 (+) False LOC110526374
XM_036980729.1 mRNA upstream 229422 66085119 ~ 66098315 (+) False LOC110526374
XM_036980728.1 mRNA upstream 229422 66092682 ~ 66098315 (+) True LOC110526374
XM_021607289.2 mRNA upstream 292356 65948419 ~ 66035381 (+) True LOC110526373
XM_021607328.2 mRNA downstream 128169 66460723 ~ 66500000 (+) False pkd1l2a
XM_021607330.2 mRNA downstream 133205 66465759 ~ 66500000 (+) False pkd1l2a
XM_021607331.2 mRNA downstream 138255 66470809 ~ 66500000 (+) True pkd1l2a
XM_036980742.1 mRNA downstream 174357 66506911 ~ 66565353 (+) False LOC110526388
XM_036980743.1 mRNA downstream 174357 66506911 ~ 66565353 (+) False LOC110526388
TU605959 other upstream 478296 65847623 ~ 65849441 (+) True G535150
TU605427 other upstream 1166407 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 1209781 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 1480633 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 1551401 64769147 ~ 64776336 (+) False LOC110526344
TU607370 other downstream 270231 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 680666 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 771752 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 771857 67104411 ~ 67104862 (+) False G537029
TU608056 other downstream 771857 67104411 ~ 67104908 (+) True G537029

Expression Profile