RNA id: XM_036980741.1


Basic Information

Item Value
RNA id XM_036980741.1
length 2117
RNA type mRNA
GC content 0.43
exon number 12
gene id bco1
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66406013 ~ 66438607 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTATTTTGAAtaaaagagaaaatgtacgctcacctttgctgcaccttggtcctcatccTTCAACAGCTGTGACAGCCCAGTAGGCTACTACTAGGATGGCCTACGACTACGCTAAAAACATAGAAGAAAGACCTGATCCAGTGAAGGCGGACCTCAAAGGAAACCTTCCAAGCTGGCTGCAAGGCACGTTGTTGCGCAATGGGCCAGGCATATTCTCAGTGGGGGATACCACATACAACCACTGGTTCGATGGGATGGCCCTGATGCACAGCTTTACATTCAAAGATGGTGAGGTAATCTACAGAAGCAGATATTTACGTGGAGACACATACAAAGACAACATGGCAGCCAAAAGAATTGTTGTGTCTGAAATGGGGACAATGGCCTACCCGGACCCAGGCAAAAACGTCATATCTAGGGTGATCACCTTTCTTAACCACACGGTCCCAGACTTCACTGACAACTGTGGCAACAATTTCATTCGATATGGGAAGGATTATTATGCAACCTCTGAAACCAACTACATCCGCAAAGTAGATCCTGTGACTCTGGAGACTCAGGACAAGGTTGACTACATGAAATACCTTGCTGTGAACCTGGTGACATCCCATCCACATTACGATAAAGACGGAACAGCCTACAACATGGGAACTTCAATAGCGGAGAAGGGAAAGACTAAATACACCTTATTCAAGGTTCCAGACACTACTGCGGGagATAAGGCCAATGCTTCTCCAGCCTTGAAGAACCTTGAGGTGATCTGCACAGTGCCCTGCCGCTCCCTCCTCAGCCCCAGCTACTACCACAGCTTCGGCATGACTGACAACTACTTCATCTTCATTGAGCAGCCATTCAAACTGGACATCCTCAAGATGGCCACAGCATACATGAGAGGGGTCAACTGGGCTAGTTGTCTTAAGTTTTGCCCTGAGGAAAATACCCTGATTCACCTGATCGATAGAAAGACAGGCAAAGAAGTGGGCATAAAGTACTACACAGAGGCAATGATAGTGTACCATCACGTGAATGCCTTTGAAGAGGATGGTCATGTCATCTTTGATGTTATCGCCTATGAAGATCCCAGCTTATACAACATGTTCTACCTAAATGTGTTAAAAGAACAATCAAAGACCTCCGCAATGTCTGTGCCAAAGTGCAAAAGATTTGCCCTTCCTGTACAGACTGACAAGGGGATTGATGTAGGAGATGATATGGTGAAACTCCAATACACAACAGCCAGCgctgtgaaagagaaagagggtaaACTACTCTGCCAGCCAGAGGTGCTTTGTGACAGTGTGGAACTACCCAGGATCAATTATGACTTCAATGGCAAGAAGTACAGATTTGTCTACATGACTTGTGTTGCAATGACAGCAGTGGCAACTAAGATCATGAAGTTGGACATTGAGACAAAGGAGAGGACTGAATGGAGTGAGGAGAACTGCTGGCCATCAGAGCCTGTGTTCATTCCAAGACCCaacggagaaggagaggatgatgGTGTGGTCTTGACAACAGTCATCAACTCCAATCCAGGGGAATCTGGCTTCATCTTGGTGCTGGATGCAAAGTCTTTCAAGGAGGTAGCTCGAGCATATATGAATGCAGAGCTTCACATGGACATGCATGGATACTTCATCCCAATGGAAAATTAGTATGACAAAGAAATGATTTACTCCAAGAGTAGCCTACTACCCTCCACAAAGAAATAGACACTATGGGAAACGATAGGGATAGTATTAGATACTTTAAATACCAAAGTGCCTTGTAAATGTTTTCTTAACAATGTCCCAGTGCTAATATTGCTACATTTTGCACAACACATGTGAGCAGTTATCTATGGACTAATGCCAGTGTAGTCTTGAATTTGTCTTTATCTCAAGGGAACCCATTATGAATATCCTCAAAATCATCTACCATGAAATATTTAAGAAAATGTTTTTTAGCGTTTTGCTAAGTATATAACACACCAATCACATAATTATGTATTTTATTGTTCATGTTTTTATGTAGTTTTGTCCTGTATAGCATTGTCAAGGAAAATCCTTATAATACAAATTATTGTACCATTTGTTGTTATTTAATTAGGCCTAATAAAGTGTGAAAAGAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU607608 lncRNA downstream 291 66401771 ~ 66405722 (-) True LOC110526384
TU607253 lncRNA downstream 37219 66360858 ~ 66368794 (-) True LOC110526383
TU607242 lncRNA downstream 76704 66328602 ~ 66329309 (-) True G536290
TU607240 lncRNA downstream 78605 66327184 ~ 66327408 (-) True G536288
TU607205 lncRNA downstream 124394 66277202 ~ 66281619 (-) True LOC110526379
TU607702 lncRNA upstream 131400 66570007 ~ 66570347 (-) True G536717
TU607706 lncRNA upstream 134658 66573265 ~ 66573486 (-) True G536721
TU607711 lncRNA upstream 144010 66582617 ~ 66586669 (-) True G536726
TU607722 lncRNA upstream 162847 66601454 ~ 66602161 (-) False G536735
TU607723 lncRNA upstream 162847 66601454 ~ 66602161 (-) False G536735
XM_021607326.2 mRNA downstream 104 66401753 ~ 66405909 (-) False LOC110526384
XM_021607325.2 mRNA downstream 7594 66360855 ~ 66398419 (-) False LOC110526383
LOC110525045 mRNA downstream 46898 66355784 ~ 66359115 (-) True LOC110525045
XM_036980734.1 mRNA downstream 51137 66332673 ~ 66354876 (-) False usp47
XM_021607327.2 mRNA upstream 9637 66448244 ~ 66452652 (-) True LOC110526385
XR_005052201.1 mRNA upstream 46673 66485280 ~ 66488027 (-) True LOC118964921
LOC110526387 mRNA upstream 61389 66499996 ~ 66505055 (-) False LOC110526387
XM_036980758.1 mRNA upstream 365751 66804358 ~ 66819558 (-) False LOC110526397
XM_036980759.1 mRNA upstream 365751 66804358 ~ 66819558 (-) True LOC110526397
TU607202 other downstream 124394 66277202 ~ 66281619 (-) False LOC110526379
TU607101 other downstream 129724 66262486 ~ 66276289 (-) True G536183
TU606664 other downstream 780041 65623989 ~ 65625972 (-) True LOC110526365
TU605344 other downstream 1520481 64855495 ~ 64885532 (-) True G534603
TU605061 other downstream 1791217 64578798 ~ 64614796 (-) True G534349
TU607649 other upstream 61781 66500388 ~ 66505025 (-) True LOC110526387
TU607613 other upstream 110760 66549367 ~ 66549974 (-) True G536630
TU609527 other upstream 1703644 68142251 ~ 68144907 (-) True G538277
TU609730 other upstream 2071708 68510315 ~ 68516681 (-) True G538460
TU610131 other upstream 2368806 68807413 ~ 68811230 (-) True LOC110526447

Expression Profile