RNA id: XM_021607327.2


Basic Information

Item Value
RNA id XM_021607327.2
length 1864
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC110526385
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66448244 ~ 66452652 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTTTACCCCTAGACTATTGTCGTCAAAGATATAGACGGACCCGTCATAGTCTAGTCTGATATAAGCTATTCTAGTTGATAAGGGACCACTGTACCACATAACAGCCGATAGCATCAGTTATTAAGGCTATGTCTCAACTCCTCATCGGCAAGAACGGGACTGAATCACCCGAACCTGTCAAAGCAGAAGTAACAGGATGTGTCCCCGAGTGGCTACAAGGGACATTGCTGCGCAATGGGCCTGGTCTCTTTAAAGTGGGAGACACTGAATACAACCACTGGTTTGATGGCATGGCCTTAATTCATAGTTTCACCTTCAAAGATGGTGAGGTGTACTACAGGAGTAAATTCCTGAGGAGTGACACCTTCAAGAAAAACACTCAGGCAAACAAGATTGTTGTTTCAGAATTTGGGACAATGATCTATCCCGATCCCtgcaaaaacatattttcaaaAGCCTTCTCCTACCTTCTCGCTGCCATCCCTGACTTCACAGATAACAACCTGATAAACATCATTAGATATGGGGAGGACTACTATGCCTCATCAGAAGTCAACTACATGAATCAAATTGACCCAATTACCCTGGATGTAATTGGAAAGATGAACTACAGGAATCACATTGCTCTGAACTTGGCGACTGCACACCCTCACTACGACGATGAGGGAAACACCTATAACATGGGAACTGCCCTCATGAGGTTTGGCATGCCCAACTATGTCATCTTCAAGGTTCCAGTAAATGCATCAGATAAGGAGCATAAGAAGCCTGCCCTGCGGAAGGTGAAGCAGGTCTGCAATATACCGTTTCGTTCTACCCTCTTCCCCAGCTACTTCCACAGCTTCGGCATGACAGAGAATTACATAATCTTTGTCGAGCAGCCATTCAAACTGGACATCGTCAGACTGGCCACAGCTATATTTAGAAGCGTCAACTGGGCCAGCTGCCTCAAATACGACAAAGAGGACATTACTCTGATCCACCTGGTCGACAAGAAGACTGGGAAGGCTGTGTCCACCAAGTTCTACACCGATGCCCTGGTGGTTTTCCACCATATCAACGCCTACGAGGACGACGGCCATGTAGTGTTTGACATGATCACCTACAAAGACAGCAATCTGTATGAAATGTTCTACTTAGTGAACCTGAGAAAGGAAACGCATGAATTCATTGAGACCAACAAGGTCAACTTCTCCCCACCAATCTGCCAGAGATTTGTCTTGCCTCTCACTGTTGACAAGGATGCTCCAAATGGAAATGTGGTGAGGCTCAAAGACACAACAGCCAAAGCAGTGATGCAGAGAGATGGCTCACTGTATTGCCTGCCTGAAACAATATTTGAAGGTTTGGAGTTGCCAGGGATGAACTACAAATTCAATGGCAAGAAGTACCGTTATTTCTATGGCTCAAGAGTGGAGTGGACTCCACACCCAAATAAGATTGGGAAGGTGGACATCGTGACCAGAAAGTACATTGAGTGGACAGAGGAGGACTGCTACCCCTCTGAGCCTGTGTTTGTTGCTTCACCAGGAGCTGTGGAGGAGGATGACGGAGTCATTTTGTCCTCAGTCGTCTCACTCAATCCAAAGATATCCCCCTTCATGCTTGTCCTTAATGCCAAAACCTTTGAGGTAATTGCTCGTGCCTCAATTGACGCCAGCGTTCACATGGATCTGCATGGACACTTCATTCCCACACAGAGCACCAACTGAAATAGCCAGCAGAGGGCAGGATTGTACCATAACATTGTAGAGGGCAAAGTATTGTTCCCAACCATGGAAAGTCAATGTCTGTGCCCCCATGGAAATTCAATGAGCATAATAAACAAAAATTCCCATTAAAATCATTCTGTTTAAAGTTGA

Function

GO: NA

KEGG:

id description
K00515 BCMO1, BCDO1; beta-carotene 15,15'-dioxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU607608 lncRNA downstream 42522 66401771 ~ 66405722 (-) True LOC110526384
TU607253 lncRNA downstream 79450 66360858 ~ 66368794 (-) True LOC110526383
TU607242 lncRNA downstream 118935 66328602 ~ 66329309 (-) True G536290
TU607240 lncRNA downstream 120836 66327184 ~ 66327408 (-) True G536288
TU607205 lncRNA downstream 166625 66277202 ~ 66281619 (-) True LOC110526379
TU607702 lncRNA upstream 117355 66570007 ~ 66570347 (-) True G536717
TU607706 lncRNA upstream 120613 66573265 ~ 66573486 (-) True G536721
TU607711 lncRNA upstream 129965 66582617 ~ 66586669 (-) True G536726
TU607722 lncRNA upstream 148802 66601454 ~ 66602161 (-) False G536735
TU607723 lncRNA upstream 148802 66601454 ~ 66602161 (-) False G536735
XM_036980741.1 mRNA downstream 9637 66406013 ~ 66438607 (-) False bco1
XM_036980739.1 mRNA downstream 29372 66406013 ~ 66418872 (-) False bco1
XM_036980738.1 mRNA downstream 29373 66406013 ~ 66418871 (-) False bco1
XM_036980740.1 mRNA downstream 32550 66406313 ~ 66415694 (-) True bco1
XM_021607326.2 mRNA downstream 42335 66401753 ~ 66405909 (-) False LOC110526384
XR_005052201.1 mRNA upstream 32628 66485280 ~ 66488027 (-) True LOC118964921
LOC110526387 mRNA upstream 47344 66499996 ~ 66505055 (-) False LOC110526387
XM_036980758.1 mRNA upstream 351706 66804358 ~ 66819558 (-) False LOC110526397
XM_036980759.1 mRNA upstream 351706 66804358 ~ 66819558 (-) True LOC110526397
XM_036980757.1 mRNA upstream 374602 66827254 ~ 66863964 (-) False LOC110526396
TU607202 other downstream 166625 66277202 ~ 66281619 (-) False LOC110526379
TU607101 other downstream 171955 66262486 ~ 66276289 (-) True G536183
TU606664 other downstream 822272 65623989 ~ 65625972 (-) True LOC110526365
TU605344 other downstream 1562712 64855495 ~ 64885532 (-) True G534603
TU605061 other downstream 1833448 64578798 ~ 64614796 (-) True G534349
TU607649 other upstream 47736 66500388 ~ 66505025 (-) True LOC110526387
TU607613 other upstream 96715 66549367 ~ 66549974 (-) True G536630
TU609527 other upstream 1689599 68142251 ~ 68144907 (-) True G538277
TU609730 other upstream 2057663 68510315 ~ 68516681 (-) True G538460
TU610131 other upstream 2354761 68807413 ~ 68811230 (-) True LOC110526447

Expression Profile