RNA id: XM_021607331.2


Basic Information

Item Value
RNA id XM_021607331.2
length 8181
RNA type mRNA
GC content 0.50
exon number 40
gene id pkd1l2a
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66460723 ~ 66500000 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGAGTAGCCTACTGGAGTGTATAGCACTGCGTACTGGACACAATCATCTTATACTGCATGCAGGCTGCAATGAGTGCTACATCATTGGCAGCCTTAAAGAAAGAGTAAACTCAGAGGCTGTTGACAGACGGGCCAGAGGACCTTATTATAGCCCATTCACTGTAGGCCTTTGCTCTGTTTGTTTGTGAACAAGGATAATGCAACCAATGGGAACTCACAAAGCCAGACTGTAAGGCGGACAGCCCTTTGTTGGAGCCAGAACAAATCATTCTGTGATGTTGAAGTGGTGACAGGGAATTGCTGACGTCAGTCCCCTTTAAAGATAGCATGTCACCAGGCTGCCTGTAACAGTGTACAGGTGAAGGGGTGAAGATGGACAGCACTAAGCTCTCTGTATTACTCTTGAATGCTTTCCTCTTAAGCCTGTCTTGTGCTGAGGATGAGATAGCACCTCTATCCTGCCCAGAGTACCAAGAGAGCTTTGACGGCTCCTGTTATGAGTTTGTGGGTCCACCTCGTTCGCGTTCCTTCCTCAGTGCACAGGGTTGGTGTGAGCGAGGTGGTGGACACCTGGCCTTCATTTTAAACGACGAAACCCAGCAGTTCCTACAGAAGCACCTGCAGACGGAGCAGGACTGGTGGCTGGGTCTGGCACCTGCCTCCCCAAACCTAACACTGGACTCTGCTGCTGCTGAGGGTCCTCTCTCCTGGCTTGATGGCTCTGATGTCAGCTACTCTAACTGGGTGAACGACCCTGATCCAGGGGCTGGCTGTGGTCACATACTGAGGAGCTCAGGGTTTCAGTGGGAGGCAACAAGCAACTGTAGCCAGGAGCTGCACTTCATCTGCCAATTTGAATCTGGGCGCTCCATTGCTTGTGCTGACCACAATGCCACACTACAGTGTGGTTCCGGTCAGGTGATAGAGATTGATGACAGCTTCTATGGTCGTAAGACGGTTCACTACTGCCGGACGAGTCCCACTTCTTCAGCCACTTCCACACAGGAGGAGTGTAGCTGGATAGATGTTGTAGATTCAGTGACAGGAGACTGCCATGGGCTGCAGGCGTGCCAAGCCACGGCAGATGTGGCCTCTTTTGGTGAACCATGCCCAGGGCTTGGAAGCTACCTGTCCGTGGAATACAACTGCAAAGATGGTCTCCACTTATTAATGAGCAAGTTGGCTGCCGTCTTTGACAATGTCTCCATAACAGTGAAGTGGCTTCTCCATCCCTTCAAGGGCAACCTGACCTGCACTCTAAGTGCTGGAGATGGGCACAACATCGATCCTTATAGTCCAGAAGAGTTGGAGAGCAGTGTGGTTCATAAATACATCCGTCCGGGTGTCTTCATAGTTGGGGTGGAGTGTACCACCAGTGAGTGGCATGTGACAGCTCAGAAAGCCATCACAATTCAGGAGCCCATCGGGGAGTTTGGCGTCATTAAGTGCTATAGCATGAACCAATCAACAGATGGAGCAAACTGCAAGGCCCTGTATGGCAGTCCCCTTCAAATCCAGGTTGAAGTAGAAGCTGGTACGAATGTGACCTACAAAGTCCACCGTGGTGAGATGTTGGTGGCCAATTCATCAGCAGTCAGAGGAATCGTCCCCCACAACATCACAGTGGGACCAGAGGTGGAGCAACAACTGGGCTCTGGCTGCCACCAGCTGACCCTGCATGCCTCTAACGGGGTCTCGGTCTTGGGCGTGTCCACTGAGCTGCAGGTGTGTCTGCTGGAGCCTGTGGAGGGCCTGCTAGGATCAGTGATGGCTGAGGAGGGAGAGTGTCCAGACTCAAACCTCTACGTTAGTGTCTCCCTGGACCGGGGGTCCCCGGTGAAGCTTCTCTTCCAGGTGTCTGGAGCCAACGACAGCATCTCCGAGACCAGAGACATGCAAAACAGAAGCATGCAGGTTTACAATATCTCAACCACTATCCAAGGAGCTTTGCAAGTGAAAGTCAGGGCCTGGAATGTCTTCTCACACATGGACGTGGATGTGGGGAACACAGCAGCAGTTTGTCACAATAAATCAGACTTTCAGACAGAGGAGCATAAAAGGCTTCCCCGGGCTAATGTGGAAATCACTTCTGATCCAGAAAGTCCATCTGACTTCACTCAAAGTGTCACACTTGGGTTAACTGGCTTGAGTGGAGTACTCGGAATCAGTGAACCTGGAATACTACTTGAATGGGAATGCAATGAACAATGTAAATGCAGAGACAAAACAAACCAGGAGACTCATGTGATTACAGCAGCCTGTCTTCCAGACCCATttcttttttatatatacagttttACTGTGCAGAAGAAAAATGGGGCTGAAGTGGCTAAAGCAGAGAAATGCATCACTGTCACTCCGCCAGAATTCACCGATGTTACCATAAGTTGTTCTACTTGTAACCCAGTGAACATAAACAACGATGTAACCCTCAAATTGGAGTGTACCACCTCAATGAGTTGCCCAACAGTAGTTTGGCATGTTGAGGACACAAGACCTTTGACAGGAGACCTCAAACACTGctacaaaaaaacaaagcaaagaCCACTGCTACACAGAATAGATGGTGGCAATGAATACATGGTGACAAGTGACAATCTGAAAAATGCCCAGTCCAGATCTCTGAATCTCAATGTGATAGCGTATGGTAAGACGACATCTGGCGTTGTAAAGTACACCATTCAGATACCAGGTGTTGCAACACTTGCATCTGTTGCCACTAACATACCGCCTGCTACCTTACCGGCTGCTACCACCATCCTACCGGCTGTTACTACTCGTCCAGCTGCTACTACAATACCTGTTGCTACCATCCCACTGGTAGCTACTACCCTACTGGCTGCTACCACCATAGCGGCAACTACTACTGTATCTGTAACTGTACCTGAAAGAACAGCCCCAACTACCGTCACCAGCCTCCCTTCCTGTATAATTTCCCCTCAGTCAGGCACAGTTCTAGATGCTTTCAATATCACCTGTGCAACAACCTCCTGCTCCACAGGCAAATGCCAATATTGTTTCAAAACTGACAAAGATAAACATTTGCGCTGCAGTTATGGAAATGAAGTAAAGTCAATCTTCCTACCTCTCGGGAACAAAAGTTACAACTACAGTCTGTCTGTGGTGGTTACTCTAACAAATGGGGATAGAAAAACCAATGCCACGATCACCACTGAGGTGTGGCCAGCCAACTCCAGTTCCTCAGTGGAGAATCTGCAGTCTGTGGTTGAGAACACTGTCGCTCAGCTACAGCAGCAGGGGTTGCTCACTGGGGAGACCCTAGGACAGATGTTCAAGTCTGTGTCTGACATTCTGAACAAGGGCTCCAGTGAGGATCAGAAAGGTgccagggaggagCTGCGAGAACAGATGCTGAGCACCATGACTGCAGTGCTGAAGAATGTCCCCAACAACACTCCTCAGGAAGTGCAGCTGACGGCCAGAGCAGTGGCAGGGATCACCAAGAGGAGGGAAGAGGTCAATTCCGCTGCTCAGCTAGAAGCTAGCTCCCTGGTGGCAGACCTCAGCTCTTCCCTCCTCTATATGAATGTCAGTGAGCATGGTGGACAAGAGATGGTGCAGGCAGCTACACCAATTGTAGAGGCAGCCAGCAATATCCTGGGAGTCTCTTCAAATGCAAGCACACagAGAAAGGTCTCAAAGACTCTCCTGAACAGTATGGACAATGTGCAGAGTGCACTGTTAAATGGTAAAAAGGTTGGTCAGGAGCCTGCCATTATCAAGAGCCCTGAGATCAGTGTGTATGCTAACAGGATGTCTCCAAATAGCATTCAGATGCAGTCTATAAACATCCCAGATAGCTCCTCTGCaagcttttccttccctcccctgGGTGCTGATGTCCTTTCTCCAGAGGAACCAGTGGATGTGCGAATGCTGAGTTTTGAGAAGAACCCTTATTCTTGGAGTGAGGGGGGTAACATCAGTGGTGCCATGGGGTCTGTGACACTCACCAGACAGGATGGATCAGCCATCCCTGTGGACAACCTGTCTGAAGAAATTGAGATCCTTTTGCCGAGACTTGAAGGCGGGCAGGTAAACAGCACAATCCTTGAACTGGGAAACTACAGCACACTGATGATTGACGTCCCTTCACCAGACATAACACTGGTGCTAAAGATGGAGCCCTCAGAGGACATACCATTTGTACTGTTGCTGGGGCATAAAGACTACCCAAAGGACAAGCAATATGTAGCCAAGACGCAGATGCCTCATCAAGGCAATTCACAAGAGAGATACACCTGGGTCCTGGGTCCCAATGATTTGACAGGAAAAGTTGGGGTGCATTACCTTGTGGTGAGGCCCATTGTAGAAGCAGGGGTTAAATCTGTCAATGCCACTGTGACTGTCACTTCCATTGCTGCCCAGTGCAAGTATTGGAATGAAACCTTATCCACCTGGAGTGAAGATGGCTGCAGGGTTGGTCCTTTAACCACGTCATTAGTCACTCAGTGCTTATGTAACCATTTGACCTTCTTCGGGAGCTCTTTCTTCATCATGCCCAACCTTGTGGATGTGTCCCGTACCGCTGAGCTCTTTGCCACCTTCTCAGACAACCCTGTGGTGGTGTGCTTTGTTGGTGCCATCTTCATTGCTTATCTCTTGGTGGTCGTGTGGGCACGcaggaaggacatcaaggacataGCCAAGGTGAAGGTAACATTGTTGGAAGATAATGACCCCTTGGCTGAATACCGTTACATGCTGAATATCAGCACTGGGCATCGGCGTGGTGCTTCCACCTCCTCTCAGGTTACTGTGACTCTGCTGGGcacggagggagagagtgagccaCACCACCTCGCTGACCCTGACAAGCCTGTGTTTGAGAGGGGTGCAGTGGATACGTTCCTGTTGACCACACCCTTCTCTCTGGGGGAGCTGCAGAGCATCAGGCTGTGGCACGACAACTCAGGGGGACACCCTGCCTGGTATATAAACAAAGTGACGGTGCAGGATCTAGAAACTGGACAGAAGTGGCACTTCCTGTGTAACTCATGGCTGGCCATAGATATGGGCGACTGCATCCTTGATAAAGTCTTCCCTGTTGCCTCTGACATAGATTTGAAGAAATTCAGTAATCTGTTCTTCATGAAAACGGCAAAGGATTTCCGTGATGGCCACATCTGGTTTTCTGTGATCAGCCGGCCTCCAACGAGCACCTTCACATGTGTCCAGCGAGTCTCCTGCTGTTTCTCTCTGCTGCTGTGTACCATGCTGACCAGCATCATGTTCTGGGGCATCCCTACCGACCCCTCTGAGCAGACCATGGACCTGGgtCATATTGAGTTCACCTGGCAGCAGGTGATGATCGGAGTTCAGAGTTCAATCATAATGTTTCCAATTAATCTCCTCATTGTGAGTATCTTCAGAAACACCCGCCCCCGAGAGACGAAGCCTGGGAAGCCCAAGGCAGAGGTGTCCAAGCAGGGGAAGACTGGCAGAGTGACTCCTTCACAGCCTCCGTccccacagagggagagagaactcaCACCAGACACTGTCATAAAGGACATAAAAAAGATTGCTCAGTCACTCTCCAAGGCTATGAAGAGCCCCATTCCACATCTGGAGTTCGAGATGAAGCCTGGACAACAAACTGATatcaactctctgctctctctggtgGAGGACATCATCCGGCAGCAGAACCGAGCCAGTGGAGAGTTCTACACTGATGCCTCCAAGAAAGAGGGATCACTCATCCTCTCACTAGGGGTAGCCAATCTGCAAGAGACCAGCCTGTGTGGGAGCCCTGAGAAGACTGGGGATGGGAGACAGAAAAGGAGCAACAACAGCCAATATCTGTACAGGCAGCTACGCCATGTAGAGAAGGAGCTGAGCCTACTGGGACCTTCTCGCTTCCCCAACCCAGACAGCTACTGCCGGGCAGTGCAGCAGGTCCAAGGCATGAGGGGTCTGCTAGAGTCCCACCTCTCATCTTCCAGCCTGGGAGGGGACCAGCTGTCTCAAAGCCCCAGCCCAGCAGAGAGCAGTGAGGGAGACAGCAGTAGTAAGAAGCAGGGTGGGCTTCCCTGGTGGTTTGTGTTTATTGGCTGGATTCTGGTGTTAGCCACCAGTGGAGTATCAGGATACTTCACCATGATGTATGGGTTGACCTATGGGAAGGACCGCTCTATAAGCTGGCTCATCTCCATGGTCGTGTCTTTCTTTGAGAGCCTCTTTATCACTCAGCCGCTGAAGGTGCTTGGTTTTGCAGCCTTCTTTGCTCTCGTTCTGAAGAAAGTTGATCAGGAGGACTATGGGGATGCAAAGTTTGAGGGGGAGCTCCGAAACCCAGATGACCCTGATGCGGTGCGGGCTGTCAGGAGGGATAGCACATGCAGCTTCTACCAGCCCCCTCCTCCAACAGACATCGAGAGGATGAGGAGCAACATGATCAAGGAGCAGAAGGTCTTTGCCCTCATCAAAGAGATTCTCACCTACATGGGGTTCATGTGGATGTTGCTCCTGGTGGCATATGGCCAGCGGGACCCTAATGCTTACTTCCTGACTCAGCACATTCGGCAGAGTTTCAGCCAAGGGATCTCAGACAGCATGAGTCACAAAGATGTGTTCAACTGGGCAAATACCTCTCTTCTCAGCAACCTCTTCGGAGAGTACCCAGGTTTCATCACTGATGGGAACTCCAAACTGGTTGGTAATGCCCGACTTCGCCAGGTGAGGGTGCAGAAGAACTCCTGCCGCATCGCCCACTCCATGCGCCCAGCTGTACCTGACTGCCATGCTCCATACTCATGGGAGGTGGAGGACATGGGTTCCTATGGGCCAGGCTGGAACCGCTCTGCGAGCGGAAACGCCTCAAAGACCCTCCACAGTCCCTGGCAGTACCAAACCCAGGCCAGACTCAGAGCCCAACCCACCTGGGGCAGTGTGGTCCTCTACAGGGGAGGGGGGTTTGTGGTGGACCTAGGCCCAGAGTCACAGAATGCTAGCAGTACCCTTCAATATCTGTTTGACAACACCTGGCTTGATATGTTCACCCGAGCAGTTTTTGTAGAGTTCACTGTGTACAATGCCAATGTCAACCTCTTCTGCACTGTCACACTCATGCTGGAGACCACAGCTGTAGGAGCGTTCCAGTTTCGCAGTGAGCTGCAGAGTGTCCGACTATACCAGTCCACCGGTGGACTCCATATCTTTGTCATGGCATCTGAGGTCATCTATTTCCTCTTTATCCTCTACTATATGTATGTTCAGGGAAAGCTGATGAAGCTGCAGAAGTGGGCTTACTTCAAGACAAAGTGGAACCTGCTGGAGCTCGCCATCATCCTCCTGAGCTGGAGCGCACTGTCTGTCTTCATTAAGAGGACCCTGTTAGGGAACCGGGACATGGAGTACTACCACAACCATAAAGACCAGTTTGCCAGTTTCCATGAGACAGCCACAGCAGATGCAGTGCTGGGGTATCTGATCGCATTCCTGGTGCTACTGGCTACAGTCAAACTGTGGCATCTGCTGAGGCTCAACCCCAAGCTACACATGATCACAGCCACACTGCAACGGGCCTGGACTGACATATCAGGCTTCCTCGTGGTCATCACCATTATGTTCCTGGCCTATTCTATCGCTTCTTATCTAATGTATGGCTGGAAGCTGTACTCATATAGGACTCTCCTGGATGCTGCTCTGACCATGGTCAGCTTACAACTGGGCATCTTCAACTATGACGAGGTTCTTGATTACAACCCGGTGCTTGGTGCGTTCCTCATCGGCTCCTGCATTATATTCATGACCTTTGTGGTTTTAAACCTGTTCATTTCTGTCATCCTGGTGGCGTTCACTCAAGAGCAAATACATCACAAGccctcagaggaggaggagatagtgGATCTGATGCTGATGAAGCTCTGCAGTTTGTTTGGAATCAAAatgaagaaggaggagaaagaagaCAGTGACAGCCCCAAGGAGAATGGCATGACTGCCTCAGCAACTAACAAAGGATTCTCCACTATATCCTCATAGATGTTACTTCTAAGTATTGGtgtatctctctgtatgtatTCATAGTGAGCTGTCATTTTCATTTCTGTTGCTTTCTAGGAGCGGTGATGCTTTTGTTGACTTGTTGCCTCTAGCTGTTTAATTATCTAACATATCACGCATAAATGAGGCTATTTGTGCCGTTTTGTGA

Function

GO: NA

KEGG:

id description
K04988 PKD1L2; polycystin 1L2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU607306 lncRNA upstream 21545 66447005 ~ 66449264 (+) True G536348
TU607287 lncRNA upstream 33638 66414416 ~ 66437171 (+) True G536329
TU607142 lncRNA upstream 130287 66340113 ~ 66340522 (+) True G536220
TU607140 lncRNA upstream 136561 66332709 ~ 66334248 (+) True G536218
TU607111 lncRNA upstream 186156 66283077 ~ 66284653 (+) True G536192
TU607356 lncRNA downstream 72059 66572059 ~ 66572392 (+) True G536392
TU607357 lncRNA downstream 73241 66573241 ~ 66573496 (+) True G536393
TU607358 lncRNA downstream 73556 66573556 ~ 66573851 (+) True G536394
TU607364 lncRNA downstream 83358 66583358 ~ 66587117 (+) True G536400
TU607373 lncRNA downstream 148557 66648557 ~ 66651510 (+) True G536409
XM_021607323.2 mRNA upstream 138255 66327731 ~ 66332554 (+) False dkk3a
XM_021607322.2 mRNA upstream 138255 66327737 ~ 66332554 (+) True dkk3a
XM_021607293.2 mRNA upstream 372494 66085119 ~ 66098315 (+) False LOC110526374
XM_036980742.1 mRNA downstream 6911 66506911 ~ 66565353 (+) False LOC110526388
XM_036980743.1 mRNA downstream 6911 66506911 ~ 66565353 (+) False LOC110526388
XM_036980744.1 mRNA downstream 6911 66506911 ~ 66565353 (+) False LOC110526388
XM_036980746.1 mRNA downstream 38687 66538687 ~ 66565353 (+) False LOC110526388
XM_036980748.1 mRNA downstream 38687 66538687 ~ 66565353 (+) False LOC110526388
TU605959 other upstream 621368 65847623 ~ 65849441 (+) True G535150
TU605427 other upstream 1309479 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 1352853 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 1623705 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 1694473 64769147 ~ 64776336 (+) False LOC110526344
TU607370 other downstream 102785 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 513220 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 604306 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 604411 67104411 ~ 67104862 (+) False G537029
TU608056 other downstream 604411 67104411 ~ 67104908 (+) True G537029

Expression Profile