RNA id: XR_005052201.1


Basic Information

Item Value
RNA id XR_005052201.1
length 1474
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC118964921
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66485280 ~ 66488027 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCAGGAGACTCGCTGGACACATGTGAAGGTGCTCGTTGGAGGCCGGCTGATCACAGAAAACCAGATGTGGCCATCACGGAAATCCTTTGCCGTTTTCATGAAGAACAGATTACTGCAGAATATGCAATGTGGATAAGGTTTCATTCCAATACTTGCACTGGGCAGCAATGGAAGTGACAGTCACAGTGGCATTGACAGATTTAACCCCTGCTTCTACAATGGGCCTCACCACAAGGTAATGCACCCCAACTTTTCCTGTCAAATCATTGGGACCCAGGACCCAGGTGTATCTCTCTGTACCCAAAATAAACACAACACAAGCACATTTATCTTTCTAAACACTCAGTGTTGTTGGTTCATTATGCTTCACAATAGTTCTATGTCTGCCATTTACAAGAAGTCAGTTCAGGAGGTTGATCACCTTGTGAATTGCCTTGATGAGGCATCTGCGTCTTGGCTACATATTGCTTGTCCTTTGGGTAGTCTTTATGCCCCAGCAACAGTACAAATGGTATGTCCTCTGAGGGCTCCATCTTTAGCACCAGTGTTATGTCTGGTGAAGGGACGTCAATCATCAGTGTGCTGTAGTTTCCCAGTTCAAGGATTGTGCTGTTTACCTGCCCGCCTTCAAGTCTCGGCAAAAGGATCTGAGAATCATAGAAGATGTTGTAATATATACAACTGTAATCATAATTCTGTCTACTTGATCATATAGTCTTTAAAGTATATGTCTTGGACATTATCTTAGAAGATATACTGTACGTCTTGGACATCAAGGGCTCTCAAGAGAAAAGCCCCACTAAAATTGGTACACGTTTGCAGCGTTCTGACCTCAATTTCTTCAGACAGGTTGTCCACAGGGATGGCTGATCCATCCTGTCTGGTGAGTGTCACAGACCCCATGGCACCACTGATGTTACCCCCCTCACTCCAAGAATAAGGGTTCTTCTCAAAACTCAGCATCTGTAAAAATAAGGAAATTATAAGACAAGAGAATGGAGGGTTAAAACCGTCCACAATATACTAATAGACAATTATTACATGAACAATTAACCAAATGAAAACCTCCCTAATGCttgacacaaaaaaaacaacactttcACTGCCGTATTCACTTCTTTGATAAATCCCTCACTAACCTCCACACATTTACTCGCAGACATTCACACTTACTCGCACATCCACTGGTTCCTCTGGAGAAAGGACATCAGCACCcaggggagggaaggaaaagcttGCAGAGGAGCTATCTGGGATGTTTATAGACTGCATCTGAATGCTATTTGGAGACATCCTAAGAGAAGAGAgtgtataatatactgtaactcaaAATTGAGGCAACTTAACAGGAGCATTTTGTATTTGAGATATTGTATTGTAAATACAAATGACATATTTCAAGTTACATTTATGTGACAGGCCTTGCATTTCTTATAGTAATGTTTCCACTCCAACGCTCTGTCTCTTACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU607615 lncRNA downstream 21016 66413296 ~ 66464264 (-) True G536632
TU607608 lncRNA downstream 79558 66401771 ~ 66405722 (-) True LOC110526384
TU607253 lncRNA downstream 116486 66360858 ~ 66368794 (-) True LOC110526383
TU607242 lncRNA downstream 155971 66328602 ~ 66329309 (-) True G536290
TU607240 lncRNA downstream 157872 66327184 ~ 66327408 (-) True G536288
TU607702 lncRNA upstream 81980 66570007 ~ 66570347 (-) True G536717
TU607706 lncRNA upstream 85238 66573265 ~ 66573486 (-) True G536721
TU607711 lncRNA upstream 94590 66582617 ~ 66586669 (-) True G536726
TU607722 lncRNA upstream 113427 66601454 ~ 66602161 (-) False G536735
TU607723 lncRNA upstream 113427 66601454 ~ 66602161 (-) False G536735
XM_021607327.2 mRNA downstream 32628 66448244 ~ 66452652 (-) True LOC110526385
XM_036980741.1 mRNA downstream 46673 66406013 ~ 66438607 (-) False bco1
XM_036980739.1 mRNA downstream 66408 66406013 ~ 66418872 (-) False bco1
XM_036980738.1 mRNA downstream 66409 66406013 ~ 66418871 (-) False bco1
XM_036980740.1 mRNA downstream 69586 66406313 ~ 66415694 (-) True bco1
LOC110526387 mRNA upstream 11969 66499996 ~ 66505055 (-) False LOC110526387
XM_036980758.1 mRNA upstream 316331 66804358 ~ 66819558 (-) False LOC110526397
XM_036980759.1 mRNA upstream 316331 66804358 ~ 66819558 (-) True LOC110526397
XM_036980757.1 mRNA upstream 339227 66827254 ~ 66863964 (-) False LOC110526396
XM_036980756.1 mRNA upstream 339227 66827254 ~ 66872098 (-) True LOC110526396
TU607202 other downstream 203661 66277202 ~ 66281619 (-) False LOC110526379
TU607101 other downstream 208991 66262486 ~ 66276289 (-) True G536183
TU606664 other downstream 859308 65623989 ~ 65625972 (-) True LOC110526365
TU605344 other downstream 1599748 64855495 ~ 64885532 (-) True G534603
TU605061 other downstream 1870484 64578798 ~ 64614796 (-) True G534349
TU607649 other upstream 12361 66500388 ~ 66505025 (-) True LOC110526387
TU607613 other upstream 61340 66549367 ~ 66549974 (-) True G536630
TU609527 other upstream 1654224 68142251 ~ 68144907 (-) True G538277
TU609730 other upstream 2022288 68510315 ~ 68516681 (-) True G538460
TU610131 other upstream 2319386 68807413 ~ 68811230 (-) True LOC110526447

Expression Profile