RNA id: XM_036980748.1


Basic Information

Item Value
RNA id XM_036980748.1
length 8694
RNA type mRNA
GC content 0.47
exon number 14
gene id LOC110526388
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66506911 ~ 66565353 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAATCAGTGTATGACCTTCTCCCCAAAGAGCTGCAGCTGCCATCCTCCACTCAGCAAAACCCAGCAGCAGCCATGAGCCAGAAGAGCGGTGGAGAGGCGGTTCCTCCTCCCTCAGCTGCCCTTGACTCAGGAAGTTCCCTCTGAAGCAGGGAGTGTCTGCATATAAAATGGTCTGCAGTTCTCTGCTTCATAGATGCCACCAACGTCTCCTCTTCTATGACCATGGGAGGCCCTCGCAGTGCTTTTCCCACCTCTTCCAGCTCCACCATGCACTCCACTACTTCAGCCACTGACCAGACCTCTGCTCACACCGGCATCGGCGCTCCAGACGAAGGTGTAAGTAGCAGAGCGGTGGCGGAGATGCTTGGCGCCGAGGGCGGGACCGGCAACAGTGGGAGTGCTGGTGGCGAGAAAGGAGGAGGGGCCGGATCCctaggtggaggaggaagagggggggcaTCCCAGGAGGCCCAGCAGCACCACCAGATGACGCCCTCCAAGCGGCGCACGGTGCTGAACATCTCGCCTCCGCCCGAGGACCTGTTTGACGACAGCCGCATGTCCTGCCAGGAGGATCAGCTCCAGGACTCCGAGCAGAGCAACAGCATCTGGATGGATGACTCCGCCTCCAACTTCAGCATCGTCAGCTCCAGCTCCTACAACGACAACACAGAGGTGCCCCGGAAGTCGCGCAAGCGCACCCCCCGCCAGCGACCCGGGCCCAAGCCTGCCTCGGCCGAGGAGGCCAGCATGGACGTGTTTGATGCAGACAGTGCCAAAGGGCCTCACTTTGTGCTCTCACAGCTGGGCTCAGACAGCAAGGCCTGTACCAAAGGAAGTTCGGCAGATGGCTCCCAAACAACCCATCAGAAATGTGGGACCCTAGCGAGCCAGTTCCCTCAGAAGAGTGAGTGCAAGGAGCTGAAGATCCTGGTCCAGCCTGAGACCCAGCACAGAGCCCGCTACCTGACTGAGGGCAGCAGGGGGTCAGTGAAGGACCGCACTCAGCAGGGCTTCCCTACCCTAAAGCTGGAGGGTGTGAATGAGGCAGTGGTGCTGCAGGTGTTTGTGGGTAATGATGCTGGGCGTGTGAAGCCACATGGGTTCTACCAGGCCTGCAGGGTGACAGGGCGCAACACTACAGCCTGCAAGGAGGTGGACATCGAGGGCACCACTGTCATTGAAGTGTCCCTGGACCCCAGCAATAATATGACCCTGGCggtgGACTGCGTGGGGATCCTGAAGCTGCGTAACGCTGATGTGGAAGCTCGTATCGGGGTGGCCGGCTCCAAAAAGAAGAGCACTCGTGCCAGGCTGGTGTTTCGGGTCAACATCCCCAGGCCGGACGGCTCGGTGCTCACGTTACAGACACCGTCGTCCCCCATCCTGTGCACCCAGCCTGCAGGGGTGCCTGAGATTCTGAAGAAGTCCCTCCACAGTTGCTCGGTGAGGGGGGGTGAGGAGGTCTTCATCATTGGGAAGAACTTCCTCAAGGACACCAAAGTCATATTCCAGGAAAATGTATCAGATGAGAAGTGTTGGAAGGCAGAGGCTGAAATTGACATGGAGCTGTTTCACCAGAATCACTTGATTGTGAAGGTTCCTCCTTACCAGAACCCAGCCATCGcgtctgcagtgtgtgtgggaATCTACGTGGTGACCAATGCTGGCCGATCCCATGACGTGCAGCCTTTTACATACACTCCAGAACCAGTGGACATATCTGTGAAGAAAGAAGATCCATCTCCAGGCAAGCCCTGCCCTTTTGATCAACGGATGAAAGTAATTGATGGTGCCTTGATGCCCCCAATGTTGCCTCTTGTGAAGAGAGAAGAGGTCACTCCAATGGAGGTCTCCAGCAACCTCCCTTCTGCTGGCGTGTTCAAGCGGACCCCCGATGTCATGTGTTCCGCCCAGCAGACGCTGGACATGAGTTCCAACCTTCCCCCCAACAACAGCCCGTTCTCCAACTCCTTGCCGCGGCCTGCCAAGGACCCTGCCGAATCCCAAACAGCAGTCTTCAACAGTGCAGAGGCCCTGAGCACCATACAGAAGCAGGACATCGCTCTCACCAACTCCTTCCCCGTGCCTGCAGACTCTCTACTCCAACCTGGGCCTCAGCAGTTCCTCCTGGAGCCCAGAGAGGGGCTTGGTCAGGACAGGGCTGGCAACAATGCTGGGGTGGTAGGGAGGCTCAGTCAACAAGTGGAGGCCCCTCAACCTGCCCCCCAGCAGCACCAGCTGCCCATATTCCCCCCAGACGATGTGGCCCAACTGGAACAAGCAGTGAGACAACTGCAGGCAAAAGGGTACTGCAGCCAGCAGCAACAGCGACAACAGCAacagattcaacaacaacaaattcagcaacaacagcagcaacaaaTTCAGCAACAACAGCAACTACAGCAACAGCAACTACAGCAACAGCAACAGATTCAGCAGCAACAGGTTCAGCAGCAACAGGTTCAGCAGCAACAGGTTCAGCAGCAACAGGTTCAGCAGCAACAGGTTCAGCAGCAACAGGTTCAGCAGCAACAGATTCAGCAGCAACAGATTCAGCAGCAACAGGTTCAGCAGCAACAGGTTCAGCAGCAACAGATTCAGCAGCAACAGATTCAGCAGCAACAGGTTCAGCAGCAACAGGTTCAGCACCAACAAATTCAGCAGCAACAGATTCAGCAGCAACAAATTCAACACCAACAAATTCAACAccaacaacagcaacagcatGTGTTGGAGAACCTGCGGCAGGAGCTGTTTAAATCACAGATGCCAATGCAGTGTGGCATATTTCAGGGCGGTTCTCTAGGTGAGAACGCTGAACAGCAGGGTTCCCAGCAGGGCATGGTGCAGAACCATGGTTCCCTCTTTCAGCAGGCCCAACAGCAGCAGAGGCAACAACAGAAACAGCAGCAGCAAGCAGCACTCTTTCAGCAAGCCAATGACCTCCTCTCCATTCAGACCAACTTCCTCCATCAGACCCCTTCtcatccctctccacccctcttccaTAACCCCAGCCCCCTGGCTGAGGCACAGGACCCACAGGGGGTGCTGTTCCACACTCAGAAGGCCTCTCCCACCCAGGAGCAGGTCCAGGCAACCCTCTTCCAGAACACCCTGACAGTGTTGAGTAGGACCAGCCTCTCCCCAGAGCAGCCCCCCTCTGCCGCCAACCTGTTCCTCCCCCAGAGTGCcctgtctggtcagctctccgcTAGCGGcagccagcagcagcagctggcCTTCCTCAGTGCCCTTCAGACCTCTGCCCCTGAGCCCCAGTCAGTGTTCCAGGCTCAGACCCAGCTTTCTCCTATCCAGCAGGGGACCCCCATGGAGCAGCAGCAGCCCTCCCAGCCTCAGCCACCTCAGCAGAACTCTATGTTTCAGAACATCTCCCCTCATCCACCTGCAAACACTCTCTCTCAGACCCAGCAGCAGCAGGCTGGCCTACTGTTCTGCAGCAAACACCTCTCCACTCCAGAGCAGCCCCCCAGTCTGCTGTTCAGTGGCCAGGGCCAGATGCCCCCCATGAGCAGCAGCAGCCTGAACTCTCAGGAGCCCCAAAACCCCTCCATGCTGTTCTCTCAGGCCAGCATGGTGACTGTTAGCCAGCAGGAATCCTCTGAGCCCATGGCCTTCCAGGACCAGAGCCAGGTGGTGGGGAACCCCTCAGAGCCTCGCCATCACGGCCTGTTCCAAGAGCAGCAGCCCATGCAGCTGATCACCAGCTCCAACAACGGCCCAGAGCAGCCCGTCTCTCTCTTCATGCCCCAATCCAACATATCTGCCCTGCAGCGTTGCATGGCTGCCCGGGAACTCCCGCAGACAGGCATCTTTAGCACTCAGAATGGGGTGGCAGGCCTGcagaccaccacctcctcccccgtACAGCAGCCAGGGTCTCTGTTCCAGACAGCAGTCAGTGGGAGCCTCAACCAGCCCAGCGAGGCCCAGCAGCCAGGCCTCTTCCTCTTTGGGATTCAGAATGAGTGTGGCCAGCTGATAACCTCTCCTGGAACCACTCTGTCTGATCAGATCATTGCCATCAGTCAGTCTGGtcagaatcagagagagagcgaggcccAGATCCAGTCGCTGCTCAACCAGTCCATGTCTGAGTCAGGGAGCATGCAGAACAGCATGACCGCCTCCCAGAACATGGAGAAGATAGATGACCTGCTTGTCAGCCTGCAGGAGCAGGGCAACAACCTCACTCGCTCCTACTAGgcctgctataggtttcagGAGCCCAGAAGACCCCCAGTGTGGACCCCCATTACAGATGGCAGAAGACCCCCAGTGTGGACTCCCATTACAGATGGCAGAAGACCCCCGGTGTGGACCCCCATTACAGATGGCAGAAGACCCCGGTGTGGACCCCCATTACAGATGGCATAAgaatgaaaacaaacccaatggTGGGCTCCTGTCCGAACTCCAAGTTACATGTAAGCCTCAGCGGCCTTTTTCTCCAAGGACAGTCTTCATGTGTAGATGCTCCACAGTGACGCCGAGCAGGGCACCAGTCCTCCACTGCATCTAAACCTGGACCTCAAAATAGGACATAGGTTGTAGTCACCCCACAACTGTCATTGTATCTCGCAGCTAGTCGCCTCCAGCTCTTAATGAAACATGACACTATGTAATGTTTGGCTAACTCATCAGTTCTCAGAGCAGCACTTTGCGGTGTGGTTTTATAAGGATGGTGGTGGAAGCTAGCACAGCATTCTGTCTTCTCCAGGACCAGAGTGTGGGCTCACAGTTGTTTATAACGCATTGTTGTCCTTTTTATACGATATTAAAAGTATTTTAGGAAATAGCAAAAGAAAATATACAATTAATGAAAAATAAACCTTTGTAAATATATTTTGACTTTAGTTCTTTCAGCACTTTATGATGCTTTCCTTTTGTGGCCAGTTACTCATTAAGTTGGCCTATGCATTTGCTAGTCAGCTATTTAGTCAGTACATCTCCACAACTTTATTACTCATGCATGTGTTTTGAGTTATGGCTTTAGTTTTTTTATTGTTCCTTTCATGAAATACCAGTTTCTTATTGGCAGCCATCTTCCCATTACCCATTCCTGAGAATAACTCCAAATATTTGAGTATTACACCATGGATTTCTTTACCTGATTAGACTCTGTAGTACGAGAGATGCTCTAGATTAGGGTCAATGTGGATCAAGAGAAAACAATCATCCAGCCTTTAAATTATTCATTTCCAGTCTACATAATTAAATAGGCCTATATTTTGAATAAATCAGAACCATATATGTGTACTATATACCAGTGTGCACGGTTGTCTGATGTAATTAAAGAGTATATTGTTATTTGTATCATTCTATTGCAAATGTAGATAATGTGTTGTTTTGTGATGTCTCCATGGAAGATGTTTGTATTAGCTCACGTCTGGCACGCACAAACTGGACTTTTATCCATAGATCAGAGAGGAGTTTTCCGTATGTTTGTCTTACTGTAAAATACCAACTCTCTTGCCTACAGTGGGCCACCCCAGGACCTGAGTCAAGGCCTCAAGTCACAGCCTCCTTTTTCGTCTTCATGAATGGCCAGTTTTATGGCTCATATTGATTGGTGTGTTCATATTTGTTGTTTGAGACTTGCCATGTTTTGACAGGAAGAAAGTGGTGAAAGTGACTGGAGCAGTTATCTGTTTTGCCTTGAGCATGAATGGTTGTTTGTAGTTGGATTATTAGTGTCAGGCGTGATAtacagatgtatgatcttaatttgatcactcttttgttgctgagaattttcctgcactggAAGAAAaacttttttattattatttgtattttatcatttttgtatatatttttgttgtactttttaccccgaatttcatgatatccaattgataGTTAGTCTTGTACCATCGCTGCAACTGCAACACGACTCTGCCAAGCCgctctgcttcttgacacacagcTCGCTTGTGTGTCAAATTTcgactttgaaatttcagacttgatttaccctaatgaaaaatgtatcaacctctacaaaaatgtccattaattataatccacagaataattcacatttccttttgctgcaggattatttttctgctATAGCAAACTAGCTCAAATTAAGACCCTACACCTGTACTGCTGCGAAACTGGTTTGTGCTTTTATTCTTTACATGTGAGTATTGGGCTGGAGTGGAGCCAACAGTAAGATTGTGTCTTGTTTTTTGTCTGAATCTGAGTATACACATGAACAAGGGGCTGGTCTCTGATGACAACAATAACAGCTTCGTTGAGtgcctccatctttctctcttagTGTTGTATTTTATTGTGTGTTCTTAACATCATTACCTTTTTTTCACTTTAAAAACaagcagattttttaaatggagagtatttaaattatttttagTAATGTGATTGGTGGGGCCCCATATTTCCCATCCCAGAGCTTGAGCTGTGTTCTTTTAGATATTTAAAGGGACCCTACTCATGAAGAATGAACCGTTAAGTTGCTTTGGAGAAAAGAGCTGTCTGTGATTGGCCTTCTTCAACTCTTGTGAAATACTAGTAGTTTTGTTTCCAGTAGTCATGAGTATTTGTGAATTTTTATCATATTTACAAATATTTTATCATATCTTTTTTACTGGTGTAGTTCTAATACATCTTTTCAGAAATCATATCTAATTTATTTGGTATTTCTTGTTTTAGATATTGTCTAAATTGTGTCCCACAATCATATTTGTGCTACAAATGACTTGATGTACAAGTTTGGTTCTGATTTAACTCCGTAATTGTATTAATATTAGTTATGTGGATTGGGCCCTTCCCCACCTGTTGAAACTGTAGTTGGCTGTGGTCTTGTGTGACATATCTGTCAGTGAAGCTTTTCTTCTCCTTGTAGATGTGAGGACAGGGATACAACTTTATGATTGAGGGAGTTCAAATGTAACATGTACACTGAGACACATGTACATTCCTGTGcattgttttcttccatttgataGATTTCCGTTGAGATCAATTGTACAGTATGTTTGTCCAAATCTGATAGTTTAAAGTCAAACCCTTGTGATATCATCCATGAAACATTTAACCTATACTGTCACATCTTCAACTTACTTCACCTCTTGAATAAGGAAAGAGCAGGAAGTTATTGGACAACTCTGCCAGTAATAAAGCCATACAGACAGTTAAAACAGTATCTATTAAATATTTGTTAATAGGGTTTACAAAAAACTCCAAACGCAGAATGTGTTTGTTACCTCAACCCGAGCAGGTTGCTAATCAGGCCACCTTACTCAACATTGGACCAATTTCAATGATAAAGTACATTCTTTATATATAGTATACATACAATATTTTGTTAGCAACATGTTAATGTTTTGTGTTATGAATACACAATAAGATTATTGTTAATAAGGATATTGAAAGAAATACCTATTTTCAAATGTAACCCATGAATATCCCATGTAGTATGAGCTTTGACAAAATAAGAGGCCTATTTGTCAAGTAGGCTACATGTTTTACATTGAGGACGACATGAGTCTTTCTAATTGAGTGGCGCTATACTTTATTGTGCCGGTAAAGGTTTCATTTATTGAAGACCTAAAAATTAACGACTTTTCCTACTCAACCAATGACTACAGAAATGCAGAGGTCACCTTGAAAGTTCATCTATATTTTTACCATATTTGCACCCAGACTAACCAATGATTTATGACATCACAGTGTACAGCAAATATATTTTAGAAGTATTGCTCAGTACATTGGATGATATACTTGTGCCTTGACAAACTTTTTATAGTAGAGACCAGATTTATCTTGTACCAGTGTTGCCTATTTTATTCACCGCTGTGACACAATTGTCAGTGGTTATTAGCCCTTGATAACTAGTATCTTGCAAGCCATACGACTTGTGTGCTTCAAATGCCGTACAGAAATGAGTGACCAGATAAATGTATAGTGTTGTGCAATTTGTTGTGCATCTGATTTATTTTCACGAAAATATGAATTGCATTTGTTTCACGTCGTTGCAATTTAAGTTTTGTCTCAAACTGCTATGCAGCTTGATTCAATATAAATGTATATCTGTaacttttttaatatatattttatctATTTAGCCTCTCTTGATTGTTCATTGCAAAGAGGAAACTATAACGAAATATTGTAATTATGTTAATTATTTATGTCACTTTTTGAAATAGTATTGATACTGTGTGCCACCgggatttgtttttatttttatgattGGGCTTGTGTCAGTCAAGACCAACACAAATTTCACCTAATTCAAACAAAGTTGTCATTCAGAATTTTCATCATGGGTGTTTTGTTTATATTGTAAATGTTATCAGTTAGTCTGTTCACACACTGTTCTGTTTGTGTCCCCTTAACCTGTCTGGCTTTGGTTTGATGTGAAAGTCTGCTTTGTTTCCATGAGTTTTTTTTCTGGTGATCAGTAATGAACCTGTTGATAGCACTGACAGGTAATAGGTATGGGGAGTGCATATCACCTATGTGTTTTTAGCTACCGTGTAAACAACTGTTAAATattacctttttaaaaaaaatgaatctatataaaaatgtatttttgcttTTGTTGGGGCATTTGTATACTCTTGCAATTATATTTATGTAAACCTGCTGGTATCTATATTAATAAAGATAGATGATACGTTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU607333 lncRNA upstream 46224 66488565 ~ 66492463 (+) True G536371
TU607306 lncRNA upstream 89423 66447005 ~ 66449264 (+) True G536348
TU607287 lncRNA upstream 101516 66414416 ~ 66437171 (+) True G536329
TU607142 lncRNA upstream 198165 66340113 ~ 66340522 (+) True G536220
TU607140 lncRNA upstream 204439 66332709 ~ 66334248 (+) True G536218
TU607356 lncRNA downstream 6706 66572059 ~ 66572392 (+) True G536392
TU607357 lncRNA downstream 7888 66573241 ~ 66573496 (+) True G536393
TU607358 lncRNA downstream 8203 66573556 ~ 66573851 (+) True G536394
TU607364 lncRNA downstream 18005 66583358 ~ 66587117 (+) True G536400
TU607373 lncRNA downstream 83204 66648557 ~ 66651510 (+) True G536409
XM_021607328.2 mRNA upstream 38687 66460723 ~ 66500000 (+) False pkd1l2a
XM_021607330.2 mRNA upstream 38687 66465759 ~ 66500000 (+) False pkd1l2a
XM_021607331.2 mRNA upstream 38687 66470809 ~ 66500000 (+) True pkd1l2a
XM_021607323.2 mRNA upstream 206133 66327731 ~ 66332554 (+) False dkk3a
XM_021607336.2 mRNA downstream 10137 66575490 ~ 66591573 (+) False LOC110526389
XM_036980750.1 mRNA downstream 10172 66575525 ~ 66591573 (+) True LOC110526389
XM_021607338.2 mRNA downstream 27228 66592581 ~ 66596719 (+) False LOC110526391
XM_036980752.1 mRNA downstream 27986 66593339 ~ 66596719 (+) True LOC110526391
XM_036980751.1 mRNA downstream 32425 66597778 ~ 66602137 (+) True LOC110526390
TU605959 other upstream 689246 65847623 ~ 65849441 (+) True G535150
TU605427 other upstream 1377357 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 1420731 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 1691583 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 1762351 64769147 ~ 64776336 (+) False LOC110526344
TU607370 other downstream 37432 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 447867 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 538953 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 539058 67104411 ~ 67104862 (+) False G537029
TU608056 other downstream 539058 67104411 ~ 67104908 (+) True G537029

Expression Profile