RNA id: XM_036980750.1


Basic Information

Item Value
RNA id XM_036980750.1
length 2443
RNA type mRNA
GC content 0.49
exon number 15
gene id LOC110526389
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66575490 ~ 66591573 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTCATTGcgtacagttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttggcgttGATCTTGCTTGCTGCACGAGGAAGATGGCTGACGTTACAGAGGTGCACTCAAATGAACTCAGCAAAAAgtCTGGTCATTGACTGGTGTAGCACAGTAGGTCATCCTGCTTCACCATGCTGACTCTGGTGGTCAGAACTGCCAGGCACCAGGTGTGCCAAGCCTTTGGGGTCAGGGCTCAGGGGGTAAAGTTCGCTCTCCCCAGTGCAGCGTCAGTCCCAGCTTTAATTCAGGGGAATCGCTGGCGAGGTGACAAAAGtgAGCTGAAGAGGCGAATGAAAGCTGAGAAGAAGGCATCTGAGAAGGAAGCCAAAGTCAAAGAGCAGGTTGAGCAGAAGGAGACCAATGACCAGGCAGATCAGAATGCAGATGAGGAGACCCTGGACCCTAACCAATACTTTAAGATCCGCACTCAAGCCATCCAGGCTCTGAAGGGCACAGCAGAGGACCCATACCCTCACAAGTACAATGTAGATCTGTCGCTCACAGAGTTCATTGAGAAATACAACCACCTACAGCCTGGAGACCAGCTAACAGACATTGTCCTCAATGTATCAGGTCGTGTCCATGCCAAGAGAGAGTCTGGGGCCAAGTTAATCTTCTATGACTTGCGAGGGGAAGGCGTCAAGCTGCAAGTTATGGCAACCAACAGGAGCTACAAGTCTGAGGAGGAGTTTGTACGCATCAACAACAAGCTGCGGCGTGGTGACATCATTGGTGTTCGTGGTAATCCAGGGAAGACCAAAAAGGGCGAACTGAGCATCATTCCCATAGAGATGACCCTGCTTTcaccttgcttgcacatgctgcCCCACCTGCACTTTGGTCTCAAGGACAAGGAAACACGATTCCGTCAGCGATACCTGGATCTGATTCTCAATGACTATGTGAGGCAGAAGTTTGTAACACGTGCCAAGATCATCACTTACCTCCGCAGCTTCCTGGACGGGCTGGGATTCCTGGAGATTGAGACGCCCATGATGAACCTGATTCCTGGTGGGGCTGTGGCCAAACCCTTTGTGACCTACCATAATGACCTAGACATGAACCTTTACATGAGGATTGCTCCTGAGCTCTACCACAAGATGCTTGTGGTTGGGGGGTTTGACAGAGTGTATGAAATTGGACGGCAGTTCAGAAACGAAGGCATTGACCTCACCCACAATCCAGAGTTCACCACCTGCGAATTCTATATGGCCTATGCAGATTACTATGACTTGATGGATATCACAGAGAAGCTTCTCTCGGGAATGGTCAAGCACATCACTGGAGAGTACAAAGTGAAGTATCATCCAGAGGGTCCAGAGGGCCCGACCTATGAGATCGACTTCACTCCTCCCTTCAGGAGGGTCAGCATGACGCACGACCTGGAGAAGGAGATGGGCGTCAAGTTCCCAGCTGCTGACACCTACGACAGTGACGAGACCCGTACATTCTTTGATGAACTGTGTGCCCAGAAAGGAGTGGAGTGCCCTCCTCCTAGAACTACTGCCCGCCTCCTTGACAAGTTGGTGGGAGATTTCCTGGAAGTCACGTGTATCAACCCCACGTTCATCTGTGACCACCCACAGATCATGAGCCCCCTGGCCAAATGGCACCGGTCAGAGAAAGGCCTGACGGAGCGTTTTGAGCTGTTTGTATTGAAGAAGGAGATCTGTAATGCCTACACTGAGTTGAACGACCCTATCAGACAGAGGGAGCTCTTTGAGCAACAGGCTAAGGCCAAGGCAGAGGGTGATGACGAGAGCATGTCCGTTGATGAGACTTTCTGCACGGCACTAGAGTATGGCCTGCCACCAACTGCTGGCTGGGGCATGGGCCTTGACCGTCTTACCATGTTCCTCACAGACTCCAACAACATTAAGGAGGTACTGTTCTTCCCTGCCATGAAGCCTGATGACAACAAGACAGCCCCTCTCACAGAGGGCACCTCTGTGTAGTATTGTGACCTCGCCTGCTGGCAGATCTCTGCAGGGGTTGGCATGGTGATGAAGCCTGGGTAAATAATCTGATTGGTCTGTTGGTCTCACTGTGTGTTCCGGTGGTGTTGAATGTTATTCATTTTATCATATGGTTTGAATCTTACAATCTGCATTATTAAGGGAAATAAGTTACTTTTTACAATTATTTTTCCACCTTTACATAGTTGAAACATTCAATTGTGTGCTGTTTTGCCTTGTATTACTTTGCGGTTGTCTCTTTTCTGTCTTCCCTCATTAGAGTGTTGGACATCCAAGCCCAATGTAATGTCAGTGAATGAGGGTTTCTGGACatgtttgtgttgtgttattgtaTGCCATACAGTCAACGACTTATTTTTACAAATTCTATGTTCACCCATACAACTGCCATTGTCACaaaaataaaatgacaaaagTGAATCTGTATTCC

Function

GO:

id name namespace
GO:0006430 lysyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004824 lysine-tRNA ligase activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K04567 KARS, lysS; lysyl-tRNA synthetase, class II

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU607358 lncRNA upstream 1674 66573556 ~ 66573851 (+) True G536394
TU607357 lncRNA upstream 2029 66573241 ~ 66573496 (+) True G536393
TU607356 lncRNA upstream 3133 66572059 ~ 66572392 (+) True G536392
TU607333 lncRNA upstream 83062 66488565 ~ 66492463 (+) True G536371
TU607306 lncRNA upstream 126261 66447005 ~ 66449264 (+) True G536348
TU607373 lncRNA downstream 56984 66648557 ~ 66651510 (+) True G536409
TU607563 lncRNA downstream 336992 66928565 ~ 66932555 (+) True G536585
TU608018 lncRNA downstream 420598 67012171 ~ 67012394 (+) True G536994
TU608026 lncRNA downstream 445056 67036629 ~ 67036990 (+) True G537000
TU608030 lncRNA downstream 448787 67040360 ~ 67040589 (+) True G537004
XM_036980746.1 mRNA upstream 10172 66538687 ~ 66565353 (+) False LOC110526388
XM_021607338.2 mRNA downstream 1008 66592581 ~ 66596719 (+) False LOC110526391
XM_036980752.1 mRNA downstream 1766 66593339 ~ 66596719 (+) True LOC110526391
XM_036980751.1 mRNA downstream 6205 66597778 ~ 66602137 (+) True LOC110526390
XR_005052448.1 mRNA downstream 8646 66600219 ~ 66600295 (+) True LOC118965117
XR_005052446.1 mRNA downstream 9364 66600937 ~ 66601020 (+) True LOC118965114
TU605959 other upstream 726084 65847623 ~ 65849441 (+) True G535150
TU605427 other upstream 1414195 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 1457569 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 1728421 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 1799189 64769147 ~ 64776336 (+) False LOC110526344
TU607370 other downstream 11212 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 421647 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 512733 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 512838 67104411 ~ 67104862 (+) False G537029
TU608056 other downstream 512838 67104411 ~ 67104908 (+) True G537029

Expression Profile