RNA id: XM_021607338.2


Basic Information

Item Value
RNA id XM_021607338.2
length 1775
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC110526391
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66592581 ~ 66596719 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAGACTGAAGAAGATCTAACACTACCAACTATGCGAAAAAGCCATTAGTATCCTAAATATTATGTTGTGCATCTGTTACGCCTTGGGAGTATCCATATAAGGAAAAACCTTATTGGCAAATACGGTTCAACTTTCACAAAGTCCTGCTGAAAAGCCGCTTCTATTTCATGTCGAGAGCGCGCAAAGGGTGATGGTGCGCGTTCCACTCAGTCAATTGCATGTGTAATCATTTCGGCCGACACTGAAGATGGCGATGAGAGTAGCGTTCCGGTGCCTTACTGCAAACTTTTCCCCAGTACTGATTCAGCGTTCACGACCTGTACAGATATCCGCAAATCGGCTCTTATGGAAGGCCAACCCCGCACAGTCACTGAGCACCGCCTCACGACTGTCCACAGCCCTGAAATTCACAGACAAGCACGAGTGGGTACGAGTAGAGGGAGGAATTGGCACAGTTGGCATCAGCAAATTTGCTCAGGAAGCATTAGGTGATGTGGTATATTGTGGACTCCCTGAGGTGGGGCAAAAACTTGAACAAATGGAGGAGTTTGGTGCTTTGGAAAGTGTGAAGGCGGCTAGTGAGCTGTACTCTCCGCTGACTGGAGAGGTAACTGAAATCAACACAGAGCTGGCAGTCAACCCTGGACTAGTGAATAAATCCTGCTACGAAGTGGGCTGGCTAATTAAGATGACTATTGACAACCCTGCAGAACTTGATGGCCTCATGGACGATTGCTCCTATGAGAAATTTATCAAATCACTTGATGAGTAGACTGCTCGACTCTCCATgttctttttttaaaatgttatttttaatgATGATTACAGGTCTTTCACACTAATCCTATCTGGACTGGCTGTAAAATCTCAGCTAAAAATATTATATAAAGTAGCCATATTTATTTTGACTGTAATTGTTTAATCACCAAGATAACCTAAATTATAATTAAAAATGCTCACCTAGGTGCTTTAGCTGATTAAACCACAAGACAACCTGAAGGGTTTGTTCCCATGTCCTGTTGGCACAATGATAAATCCTGTTGGCACAAAAATAAGAGTTGATTACTTCATGTGCTTGGTTTGAACTGAAAAAAATGCAGAGAAGTGGCAACAGGTTGGAAAGTGATCGGAAATGAGAAGTCAGATACAATAAATACAATCCATTGTTTTTTCATTATGGCTTTTCTATTCCATCTGATGGGAAGGATGGAATACAGTACTATTCACTTGCTTTACATAAACCACCTTAAGTCATTATCTAAGTCTAAACTTAATTTGATGTCTGGCAATGCAAGACTAGTCAAAACAAAACCTTGGCTGGTAGCCTGGCACTTCCAAAGACTCCCACACTTGTAGATTGACATTTTTCAGCAAGATCACCTTCTTTAGAACAAAAGACTACAGCACAAATTAAGCAAGAATCAAATCTATTTGTGATATTTTCCTATTTTGAGGTAACATCTGACATCAGGAATATGTGGATAATATTGcatttgttgtgttgtttgtacACACTGCCTGTGATTGTTGACATGGCTCACTAATATCTACTGCtatacatatcattcttagtatatgtTTTTGGTGTAGGCCTATATATGcatagattgcatttggattatTCGTTGTGTTATTTGGGTTACCTGGATTTGTTCTGACATTCATATATTGTTTTTgattatttgtgtacttgtttggcattgttaggagctaggaacccaagcattttgctgcacctgctgtttgtgaccaataaaatttgatttgatatgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU607364 lncRNA upstream 5464 66583358 ~ 66587117 (+) True G536400
TU607358 lncRNA upstream 18730 66573556 ~ 66573851 (+) True G536394
TU607357 lncRNA upstream 19085 66573241 ~ 66573496 (+) True G536393
TU607356 lncRNA upstream 20189 66572059 ~ 66572392 (+) True G536392
TU607333 lncRNA upstream 100118 66488565 ~ 66492463 (+) True G536371
TU607373 lncRNA downstream 51838 66648557 ~ 66651510 (+) True G536409
TU607563 lncRNA downstream 331846 66928565 ~ 66932555 (+) True G536585
TU608018 lncRNA downstream 415452 67012171 ~ 67012394 (+) True G536994
TU608026 lncRNA downstream 439910 67036629 ~ 67036990 (+) True G537000
TU608030 lncRNA downstream 443641 67040360 ~ 67040589 (+) True G537004
XM_021607336.2 mRNA upstream 1008 66575490 ~ 66591573 (+) False LOC110526389
XM_036980750.1 mRNA upstream 1008 66575525 ~ 66591573 (+) True LOC110526389
XM_036980746.1 mRNA upstream 27228 66538687 ~ 66565353 (+) False LOC110526388
XM_036980751.1 mRNA downstream 1059 66597778 ~ 66602137 (+) True LOC110526390
XR_005052448.1 mRNA downstream 3500 66600219 ~ 66600295 (+) True LOC118965117
XR_005052446.1 mRNA downstream 4218 66600937 ~ 66601020 (+) True LOC118965114
XR_005052447.1 mRNA downstream 4966 66601685 ~ 66601769 (+) True LOC118965116
XM_021607339.2 mRNA downstream 12511 66609230 ~ 66647423 (+) False LOC110526392
TU605959 other upstream 743140 65847623 ~ 65849441 (+) True G535150
TU605427 other upstream 1431251 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 1474625 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 1745477 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 1816245 64769147 ~ 64776336 (+) False LOC110526344
TU607370 other downstream 6066 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 416501 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 507587 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 507692 67104411 ~ 67104862 (+) False G537029
TU608056 other downstream 507692 67104411 ~ 67104908 (+) True G537029

Expression Profile