RNA id: XM_036980752.1


Basic Information

Item Value
RNA id XM_036980752.1
length 1443
RNA type mRNA
GC content 0.38
exon number 5
gene id LOC110526391
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66592581 ~ 66596719 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTATGGAGTTCCAATGTACTTTTGTGATTCCCTGACCAGCCTGTCGAACAACGGTCCCGCGTTAGCCCTGAAATTCACAGACAAGCACGAGTGGGTACGAGTAGAGGGAGGAATTGGCACAGTTGGCATCAGCAAATTTGCTCAGGAAGCATTAGGTGATGTGGTATATTGTGGACTCCCTGAGGTGGGGCAAAAACTTGAACAAATGGAGGAGTTTGGTGCTTTGGAAAGTGTGAAGGCGGCTAGTGAGCTGTACTCTCCGCTGACTGGAGAGGTAACTGAAATCAACACAGAGCTGGCAGTCAACCCTGGACTAGTGAATAAATCCTGCTACGAAGTGGGCTGGCTAATTAAGATGACTATTGACAACCCTGCAGAACTTGATGGCCTCATGGACGATTGCTCCTATGAGAAATTTATCAAATCACTTGATGAGTAGACTGCTCGACTCTCCATgttctttttttaaaatgttatttttaatgATGATTACAGGTCTTTCACACTAATCCTATCTGGACTGGCTGTAAAATCTCAGCTAAAAATATTATATAAAGTAGCCATATTTATTTTGACTGTAATTGTTTAATCACCAAGATAACCTAAATTATAATTAAAAATGCTCACCTAGGTGCTTTAGCTGATTAAACCACAAGACAACCTGAAGGGTTTGTTCCCATGTCCTGTTGGCACAATGATAAATCCTGTTGGCACAAAAATAAGAGTTGATTACTTCATGTGCTTGGTTTGAACTGAAAAAAATGCAGAGAAGTGGCAACAGGTTGGAAAGTGATCGGAAATGAGAAGTCAGATACAATAAATACAATCCATTGTTTTTTCATTATGGCTTTTCTATTCCATCTGATGGGAAGGATGGAATACAGTACTATTCACTTGCTTTACATAAACCACCTTAAGTCATTATCTAAGTCTAAACTTAATTTGATGTCTGGCAATGCAAGACTAGTCAAAACAAAACCTTGGCTGGTAGCCTGGCACTTCCAAAGACTCCCACACTTGTAGATTGACATTTTTCAGCAAGATCACCTTCTTTAGAACAAAAGACTACAGCACAAATTAAGCAAGAATCAAATCTATTTGTGATATTTTCCTATTTTGAGGTAACATCTGACATCAGGAATATGTGGATAATATTGcatttgttgtgttgtttgtacACACTGCCTGTGATTGTTGACATGGCTCACTAATATCTACTGCtatacatatcattcttagtatatgtTTTTGGTGTAGGCCTATATATGcatagattgcatttggattatTCGTTGTGTTATTTGGGTTACCTGGATTTGTTCTGACATTCATATATTGTTTTTgattatttgtgtacttgtttggcattgttaggagctaggaacccaagcattttgctgcacctgctgtttgtgaccaataaaatttgatttgatatgct

Function

GO:

id name namespace
GO:0019464 glycine decarboxylation via glycine cleavage system biological_process
GO:0005960 glycine cleavage complex cellular_component

KEGG:

id description
K02437 gcvH, GCSH; glycine cleavage system H protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU607364 lncRNA upstream 6222 66583358 ~ 66587117 (+) True G536400
TU607358 lncRNA upstream 19488 66573556 ~ 66573851 (+) True G536394
TU607357 lncRNA upstream 19843 66573241 ~ 66573496 (+) True G536393
TU607356 lncRNA upstream 20947 66572059 ~ 66572392 (+) True G536392
TU607333 lncRNA upstream 100876 66488565 ~ 66492463 (+) True G536371
TU607373 lncRNA downstream 51838 66648557 ~ 66651510 (+) True G536409
TU607563 lncRNA downstream 331846 66928565 ~ 66932555 (+) True G536585
TU608018 lncRNA downstream 415452 67012171 ~ 67012394 (+) True G536994
TU608026 lncRNA downstream 439910 67036629 ~ 67036990 (+) True G537000
TU608030 lncRNA downstream 443641 67040360 ~ 67040589 (+) True G537004
XM_021607336.2 mRNA upstream 1766 66575490 ~ 66591573 (+) False LOC110526389
XM_036980750.1 mRNA upstream 1766 66575525 ~ 66591573 (+) True LOC110526389
XM_036980745.1 mRNA upstream 27986 66538688 ~ 66565353 (+) False LOC110526388
XM_036980751.1 mRNA downstream 1059 66597778 ~ 66602137 (+) True LOC110526390
XR_005052448.1 mRNA downstream 3500 66600219 ~ 66600295 (+) True LOC118965117
XR_005052446.1 mRNA downstream 4218 66600937 ~ 66601020 (+) True LOC118965114
XR_005052447.1 mRNA downstream 4966 66601685 ~ 66601769 (+) True LOC118965116
XM_021607339.2 mRNA downstream 12511 66609230 ~ 66647423 (+) False LOC110526392
TU605959 other upstream 743898 65847623 ~ 65849441 (+) True G535150
TU605427 other upstream 1432009 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 1475383 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 1746235 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 1817003 64769147 ~ 64776336 (+) False LOC110526344
TU607370 other downstream 6066 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 416501 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 507587 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 507692 67104411 ~ 67104862 (+) False G537029
TU608056 other downstream 507692 67104411 ~ 67104908 (+) True G537029

Expression Profile