RNA id: XR_005052446.1



Basic Information


Item Value
RNA id XR_005052446.1
length 84
RNA type mRNA
GC content 0.42
exon number 1
gene id LOC118965114
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66600937 ~ 66601020 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGATGACAAATTCTCCGGAATCTCTGTACTACCTTGATGATTACATTTGAACCTATTATCTGATGACTGCCGGGTTCGTGTGTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU607364 lncRNA upstream 13820 66583358 ~ 66587117 (+) True G536400
TU607358 lncRNA upstream 27086 66573556 ~ 66573851 (+) True G536394
TU607357 lncRNA upstream 27441 66573241 ~ 66573496 (+) True G536393
TU607356 lncRNA upstream 28545 66572059 ~ 66572392 (+) True G536392
TU607333 lncRNA upstream 108474 66488565 ~ 66492463 (+) True G536371
TU607373 lncRNA downstream 47537 66648557 ~ 66651510 (+) True G536409
TU607563 lncRNA downstream 327545 66928565 ~ 66932555 (+) True G536585
TU608018 lncRNA downstream 411151 67012171 ~ 67012394 (+) True G536994
TU608026 lncRNA downstream 435609 67036629 ~ 67036990 (+) True G537000
TU608030 lncRNA downstream 439340 67040360 ~ 67040589 (+) True G537004
XR_005052448.1 mRNA upstream 642 66600219 ~ 66600295 (+) True LOC118965117
XM_021607338.2 mRNA upstream 4218 66592581 ~ 66596719 (+) False LOC110526391
XM_036980752.1 mRNA upstream 4218 66593339 ~ 66596719 (+) True LOC110526391
XM_021607336.2 mRNA upstream 9364 66575490 ~ 66591573 (+) False LOC110526389
XM_036980750.1 mRNA upstream 9364 66575525 ~ 66591573 (+) True LOC110526389
XR_005052447.1 mRNA downstream 665 66601685 ~ 66601769 (+) True LOC118965116
XM_021607339.2 mRNA downstream 8210 66609230 ~ 66647423 (+) False LOC110526392
XM_021607340.2 mRNA downstream 8255 66609275 ~ 66647423 (+) True LOC110526392
LOC110526947 mRNA downstream 118788 66719808 ~ 66720441 (+) True LOC110526947
XM_021607342.2 mRNA downstream 147796 66748816 ~ 66753440 (+) True LOC110526393
TU605959 other upstream 751496 65847623 ~ 65849441 (+) True G535150
TU605427 other upstream 1439607 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 1482981 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 1753833 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 1824601 64769147 ~ 64776336 (+) False LOC110526344
TU607370 other downstream 1765 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 412200 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 503286 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 503391 67104411 ~ 67104862 (+) False G537029
TU608056 other downstream 503391 67104411 ~ 67104908 (+) True G537029

Expression Profile