RNA id: XM_021607340.2


Basic Information

Item Value
RNA id XM_021607340.2
length 2988
RNA type mRNA
GC content 0.49
exon number 16
gene id LOC110526392
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66609230 ~ 66647423 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGAAGGAAAGGTAACAACAAGTGTAAGTTCAGGGGACCACGTCAGGTAGGAACAAGCAGCAAGTGTTTGGATGTATTATTTTGAAGCATGTGATGCAAGTTTCTGAATGATTGAGGTACAGTACCTGTGTGGAGTTTGAAGAGAAGGATGATTGGGAGCACACACTTTTTTAACCTGTTTCTGATGCTCATGGACAACTTTTTCATGAagaacacatgaaaacacacttTGGCTGGTCCTGAATCGTAAATGACCCTCCACAGCTTTCTGGTCATCTAATCACGACTCCCCAACCTCCATCCAGCTCGGCCCACCCTGTCTGTTATCTCTGCAGACATTAAATTACACCTGCCTTCATCTCAAATACAGACCTCTGCGAGAACTCTTTTCCCTTTTGTAACATTCACTACCAAGTCCAAGGATCCATTCTTCTCTTCTATGTATCTAACTCTGTGAGATTTCAGTGCCTCGCTCGGTTTGAATCCCTTAGCCATCCCTAGTAGTTCCCATTACTCTGAGCTCTCGGCAGCACCCACCCTCTCTTGCTCCTTACTGGTTGACTCCTTGGGTCCTGAGCCAGGATGAATGACGTCCAGGATGCTACCTCTCCAGGGGCCGCTCTAGGTGGCCCTGTCGCCTGCGTCTCCAAAGTGGAACTGCGCGTCGCCTGCAAGGCCCTGCTGGACCGAGACACATTGAACAAGTCTGACCCATGTGTCATACTCATGGTGCAGAACCAGGGACAGTGGACAGAGCTTGACAGGACAGAGGTGATCAAGAGCAACCTGCACCCGGTCTTTGCCAAGGTCTTCACCCTGGACTACTACTTTGAGGAAGTGCAGAAGCTGCGGTTCGAGGTCTACGACATCCATGGCACCCACAGTATTGGCACCCGCGACGACGACTTCCTGGGCGGAGTGGAGTGTACGCTCGGCCAGATTGTAGCCCAGAAGAAGATGGTGAAGCCTTTATTCCTAAAGTATGCGAAGTACGCTGGGAAATCCACCATCACGGTACACGCTGAAGAAATTTCTGGCAACAATGGATATGTTGAACTGTTCTTCTGTGCCAAGAAACTGGATGATAAGGATCTCTTCAGTAAGTCAGACCCCTTTTTGGAAATATATCGAATTAACGATGATGGGACGGAACAGCTCGTTCACAGAACTGAGGTAATCAAAAACAACCTGAACCCCGTGTGGGAGCCCTTTAAagtgtctctcatctctctgtgtaGCTGTGATGAGGACAGGAAGCTCAAGTGCCTAGTCTGGGATTCTGACTCCAGGGGAAAACACGACTTCATCGGGGAGTTTTATGCCACCTTCCGAGAAATGCAGAAAATTGGCGGTGGAAGCAAGGTCACATGGGATTGCATGAATCCAAAGTACAAACTGAAGAAAAAGAACTACAAGAACTCTGGGGTGGTCATCCTCAGTGATCTCAAGCTTCACAGAGTGTATTCCTTCCTCGACTACATCATGGGAGGATGCCAAATCCACTTTACAGTGGCCATTGACTTCACAGCCTCCAACGGAGACCCACGGAACAGCTGCTCCCTACACTACATCAACCCGTACCAGCCCAATGAGTATCTGAAGGCTTTGATAGCAGTGGGGGAGATCTGTCAGGATTATGACAGTGACAAAAGATTTTCCGCCTTGGGATTTGGTGCCAGAATTCCACCCAATTATGAGGTGTCCCATGACTTTGCCATCAATTTCAACCCAGAGGACGATGAATGTGAAGaGATTCAGGGGGTGGTGGAGGCCTACCAGAACTGCCTGCCTAAGATCCAGCTGTATGGTCCCACCAACGTCTCTCCCATCATCAGCAGGATAGCCAAGCTGTCAGCAGGAGAGGAGACCATCAAAGATGCCTCACGTTACCACATCCTGCTGATCCTCACAGACGGCGTGGTGACAGACATGGCAGACACACGCGAGGCCATCGTGCGTGCCTCCTACCAGCCCCTGTCCATCATCATCGTTGGCGTGGGCAATGCAGACTTCACAGACATGCAGATCCTGGACGGGGATGACGGGGTGCTGCGCTCACCCAAAGGAGAGCCCGTCCTCAGGGACATTGTGCAGTTTGTGCCCTTCAGAGACTTCAAAACGGCCTCGCCTGCTGCCTTGGCCAAATGTGTCCTTGCGGAGGTGCCCAACCAGGTGGTGGAGTACTACAGTCACAAGGCCATCTGCCCCATGCCGCCCATCCCATCATGTGACTCTCCCACCTCCCTTGCCAACACCCCTACAGAATCACTGCCAGCAGTGGGGACCACGGCCTGACCACATctcagtccagagagagagagggtgcagATCGCTGCTCTGGaccaagaaccatggtcattaaTATTAGTGTTGTTGTCATTCCTTTTTCATTCGTACAGTGTTCACACACAGACTGGAACAGAAACCTTTGGATTGTTTTCTCTCTCCGTTCGGATCATGTCCCTCTGCCTGGCTGTGCATCCATCTGCCTGTTCAGCATGATGCTGGAGGATGCATGCAGGTGAATCCCTCCCAAAGTTGATCAACTATGGTCACAGGCTCTCTGTCCCCTTCTGCCCTGATACTGGCATCTTGGCCCTCAGCTGATTTTTTTATGACTTTCAAGGCTCTCCAAGGCTTCAGTCTGCTTCTCTTGTGTGTCCATTTtgctctgctgtgtctctctgtcttactGCCCATCACTGGTATTGTCTGAAGAGCCTGTCAACTGAAGGATTGAGGGAGGGGGAATCTAAACATATCAAACCACATGAGTCTTTCAATTATGAGGAAAGAGATTTAGGTAACACTTTCTTTTACTTTTCCTAAATGATGCCTGCACAGAAAAGGTAGTCATATACAGTACGGGTcaaaaaatttggacacacctgctcattcaagggtttttctttatttttactattttctacattgtagaataatagcaaagacatcaaaactttgaaataacacatggaatcatgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU607364 lncRNA upstream 22158 66583358 ~ 66587117 (+) True G536400
TU607358 lncRNA upstream 35424 66573556 ~ 66573851 (+) True G536394
TU607357 lncRNA upstream 35779 66573241 ~ 66573496 (+) True G536393
TU607356 lncRNA upstream 36883 66572059 ~ 66572392 (+) True G536392
TU607333 lncRNA upstream 116812 66488565 ~ 66492463 (+) True G536371
TU607373 lncRNA downstream 1134 66648557 ~ 66651510 (+) True G536409
TU607563 lncRNA downstream 281142 66928565 ~ 66932555 (+) True G536585
TU608018 lncRNA downstream 364748 67012171 ~ 67012394 (+) True G536994
TU608026 lncRNA downstream 389206 67036629 ~ 67036990 (+) True G537000
TU608030 lncRNA downstream 392937 67040360 ~ 67040589 (+) True G537004
XM_036980751.1 mRNA upstream 7138 66597778 ~ 66602137 (+) True LOC110526390
XR_005052447.1 mRNA upstream 7506 66601685 ~ 66601769 (+) True LOC118965116
XR_005052446.1 mRNA upstream 8255 66600937 ~ 66601020 (+) True LOC118965114
XR_005052448.1 mRNA upstream 8980 66600219 ~ 66600295 (+) True LOC118965117
XM_021607338.2 mRNA upstream 12556 66592581 ~ 66596719 (+) False LOC110526391
LOC110526947 mRNA downstream 72385 66719808 ~ 66720441 (+) True LOC110526947
XM_021607342.2 mRNA downstream 101393 66748816 ~ 66753440 (+) True LOC110526393
XM_036980753.1 mRNA downstream 108907 66756330 ~ 66776332 (+) False LOC110526948
XM_036980755.1 mRNA downstream 108907 66756330 ~ 66776332 (+) False LOC110526948
XM_036980754.1 mRNA downstream 108941 66756364 ~ 66776332 (+) True LOC110526948
TU607370 other upstream 5222 66602785 ~ 66604053 (+) True G536406
TU605959 other upstream 759834 65847623 ~ 65849441 (+) True G535150
TU605427 other upstream 1447945 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 1491319 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 1762171 64790322 ~ 64847104 (+) True G534453
TU608020 other downstream 365797 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 456883 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 456988 67104411 ~ 67104862 (+) False G537029
TU608056 other downstream 456988 67104411 ~ 67104908 (+) True G537029
TU608066 other downstream 462253 67109676 ~ 67110628 (+) True G537032

Expression Profile