RNA id: XM_036980755.1


Basic Information

Item Value
RNA id XM_036980755.1
length 4876
RNA type mRNA
GC content 0.53
exon number 25
gene id LOC110526948
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66756330 ~ 66776332 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGTTTTTTTTAGGAATATCCCGTGGAATTGTGGGATAGCAATGGCGGCTTCTGTCTTTGTAAACAAAAAACGCACAATTTACAAAAGATAATAGCTAATGGTTTGAATCATTTCAAGTGGGTGGCACAGTTTTCGTACTTACATGAATGTTATTTTCCCAATAACTCGGGTTGTTGATGTTATTGAAGATCGTTTTTTGATTTACAATAAATACATGTGGCAGGTTTAGCTAGCTCGCTAAAAAAAAGACTAGCTAGTGTAAGCGTCTTGATAGACTCACCACCTATTGTTAAAGACAGTTGTTTGAGACCATGGATGATGATGCGTCACTGCATCGACTGGAGGGCAGTGACCCCACTGCGCAGGTTGGCGGGCTGATTGTGAAGAAGAAGAGTGCAGCAGTAGAGCCTCATGTCTTTCGTGCACCCACTCCACGCACCTCTCTCCTGGGCCTGGATCTGCTGGCAGCTCAAAAGAGAAAGGAGCGAGAGGGCAAGGAGCAGGCTGAGGCTGACAGCGATGACAGGAATAACAAGAAATCCAAGGTGTCCTCCTACAAGGACTGGGAGGAAGGGAAAAGTGATTCTGGGTCTGATGAAGAAGACAAAGACGAGGAGGATCAAGGTGGTAAAAAAGAGAGCAGGAAGTACCGTGTGACTGGCTCAGAGACACCCTCTAACCCTGGAGGGGTCAGTGAAGAGTTCCGTCGCAAACACCAGCAGAGGGAGAAAGACCGGCGTGAGCATGGAATGTACGCCTCTTCCAAAGAGGACAAGAACAGAGAGAGGATCAGAGATACGGACAGAGATCGAAGGGGTGAAAGAGATGAGCGGGAGCGCAGTCACAGCCGCGGCGGCGGCAGCTGCCGGTCGGAGCGTGGAGACCGCAGTGAGAGGAGTGAGCGCTCACAGAGAGAAGGCTGGTCCTCCGAACGCATCAGCcgggggagcaagagagaggagccTTCAACGCCCCAGACACGCCCCAAAGATGGCACTCCCTCGCGCACCAGCTGGGATGAGGATGACAGCGGCTATGCCAGCTCACGCCGTTCCCACTGGGAATCTCCCTCTCCTGCCCCTTCACACAAGGACTCTGACAAGTCTGAACGGTCGGAGCGCAGCCCCCGCTCTGGAcgggagagtgagaggaaggaCAAGTCAGTCAGAGGCCGGTATCCTGATGACACGCCCCTTCCCACCCCTTCATACAAGTACAACGAATGGGCCAATGACAGGAAGCACTTGGGCTCCACACCTCGTCTGTCCCGTGGGAAAGGTAAGAATGAAGGAGAGGATGGCATTGCCTTTGATAATGATGATGAGAAGCAGCAGTGGGAGGAGGACCAGAAGCAAGCGGACAGAGACTGGTACATGATGGACGAAGGCTATGACGAGTTCCACAACCCACTGACCTCCACCTCTGAGGATTATGTGAAGAAAAGAGAGCAGATCCTGCAGAAGCAGACACAGAAACGCATCTCTGCCCAGAGACGACAGATCAATGAGGATAATGAGCGCTGGGAGACTAATCGTATGCTGACCAGTGGAGTGGTCCAGAGGCTGGAGGTGGATGATGACTTTGAGGAGGACAATGCTGCCAAGGTCCACCTGCTGGTTCACAACCTGGTCCCTCCCTTCCTGGACGGGAGGATAGTCTTCACCAAGCAGCCGGAGCCTGTCATCCCTGTGAAAGACGCCACCTCTGACATGGCCATCATCTCCCGCAAGGGCAGCCAGCTGGTCCGCAAGCACCGCGAGCAGAAGGAACGCAAGAAGGCTCAACAGAAACACTGGGAGCTGGCAGGCACCAAGCTGGGTGACATTATGGGCATCAAGAAGACCGAGGACGGGGATAGCTCTGGGGGCAAGCCAGTGGGTGAGGATGGCAAGGTGGACTACAGaACGGATCAGAAGTTTGCAGACCACATGAAAGATAAGAGTGAGGCCAGCAGTGAGTTTGCTAAGAAGAAGACCCTGCTGGAGCAGAGGCAGTATCTGCCCATCTTCGCTGTGAGGCAGCAGCTGCTCAACATCATCAGGGACAACAGCATTGTGATTGTGGTGGGGGAGACGGGCAGTGGGAAGACCACCCAGCTGACCCAGTACCTACACGAGGACGGCTACACCAGTTACGGCATGGTGGGCTGCACCCAGCCCCGCAGAGTGGCAGCCATGAGCGTGGCCAAGAGAGTCAGCGAGGAGCTGGGCAGCAACCTGGGAGAGGAGGTGGGTTATGCGATCCGTTTTGAGGACTGTACGTCGGAGAAGACTGTGATAAAGTACATGACAGACGGCATCCTGCTGAGAGAGTCTCTCAGGGAGTCAGATCTGGACCACTACAGTGCTGTCATCATGGACGAGGCCCACGAACGCTCCCTCAACACAGACGTGCTGTTCGGCCTGCTACGAGAGGTTGTATCGAGGCGTTCTGACCTCAAGCTGATAGTCACCTCAGCCACCATGGACTCTGACAAATTTGCTGCATTTTTCGGCAACGTTCCCATATTCCACATTCCAGGAAGAACATTCCCTGTAGACATCTTATTCAGCAAGACTCCCCAGGAAGACTATGTGGAGGCAGCAGTGAAGCAGGCCCTACAGATCCACCTTAGTGGTATGGGGGGAGACATCCTCATCTTCATGCCTGGCCAGGAGGACATCGAGGTGACGTCAGACCAGATTGTGGAGCGTCTGGAGGATCTGGAGAGTGCCCCTCCTCTGACTGTACTGCCCATCTACTCCCAGCTGCCCTCTGACCTCCAGGCCAAGATCTTCCAGAAGGCTCCAGATGGTGTGAGGAAGTGCATCGTTGCCACCAACATTGCCGAGACCTCCCTGACTGTGGATGGTATCATGTTTGTTGTGGATGCTGGATACTGCAAACTCAAGGTGTTCAACCCTCGCATTGGCATGGATGCCCTGCAGGTGTACCCCATCAGCCAGGCTAACGCCAATCAGCGTGCGGGCAGAGCAGGACGTACAGGACCGGGCCAGTGTTACAGGCTGTACACCCAGAGCGCCTTCAAGAATGAGATGTTGACCACCACCATCCCAGAGATTCAGCGGACCAACCTGGCCAACGTGGTGCTGCTGCTCAAATCCCTGGGGGTCCAGGACCTGCTGCTCTTCCACTTCATGGACCCCCCGCCTGAGGACAACATGCTGAACTCCATGTACCAGCTGTGGATCCTGGGGGCCCTGGACAACACAGGTTCCCTGACGCCCACTGGGAGGCTGATGGTGGAGTTCCCTCTGGACCCGGCTCTGTCCAAGATGCTGATCGTATCATGTGACATGGGCTGCAGTGCTGACATCCTCATCATCGTCTCCATGCTGTCTGTACCGGCCATCTTCTACAGGCCTAAGGGTCGTGAGGAGGAGAGTGACCAGGTGAGGGAGAAGTTCTCTGTCCCAGAGAGTGACCACCTGACCTACCTGAACGTCTACCTGCAGTGGAAGAACAACAACTACTCCAGCATCTGGTGCAACGAACACTTCATCCACACCAAGGCCATGCGAAAGGTGCGCGAGGTGCGCTCCCAGCTCAAAGACATCATGGTGCAGCAGAGGATGAACCTGGTGTCCTGTGGCTCAGACTGGGACATCATCAGGAAGTGTATCTGTGCTGCCTACTTCCACCAGGCAGCCAAGCTGAAGGGCATAGGGGAGTATGTGAACGTGAGGACAGGCATGCCCTGCCACCTCCATCCCACCAGCTCTCTGTTTGGCATGGGCTACACCCCAGACTACATCACCTACCACGAGCTGGTCATGACCACCAAGGAGTACATGCAGTGTGTGACTGCGGTGGATGGGGAGTGGCTGGCTGAGCTGGGGCCCATGTTCTACAGCGTCAAACAGGCAGGGAAGAGCAGGATGgaGAACCGGCGGCGGGCCAAGGAGGAGATCActaacatggaggaggagatgtctCTGGCGGAGCAGCAActgaggagcaggagagaggatcAGGACAGGAAGAGTAACGTGGGCAGCGTCAGGGCTGTGAAAATCTGCACCccgggaaggaaggaggaggcacCCATGACCCCAAAGCGCACCCCAGCTCGTTTTGGGCTCTAGATCTTCTGTTAAGACTTAAACACTTGAACTCACCACTAAATATCACCTGTTTGTGTACCATACCATCACTGGATGAGCTTGGCTGAGAGGGCTTGGATAACTGTCCCCTCCTATTGTTCGGTACTAGCTGCAGTTCAGACAGAGGCCAGCAGAGGTAGAACTTGTATAAGACATGAGGCTCCCGTAACAGACCTTTTCTGTCAGCAAATCCACATAGCGTCCCTCCATTTTTACGTGCAGAGAGATACTGCATTCTAACAGCCGTATACtgtattttctatttctgtgatagtaaaaaaacgaacaaaaaaacCCCCAATGATGAAACATCATTGAAAAGGTATCGTCTTTAAAGGGTATTTGATATACTTTGAAAATCTGTCAAAGCCTTTATCATAATCCTTCACAGGCTACAGAGTCCAAGCAGGAAACCTTTAGTTGTTCCATCTCCTACTGTACCCTACAAGGGGCTGTTTTCTTGATGGTAGTCTCTCCCGATCAATATAAACTATGTTCAAtaaggctgggaattgccagggacctcaccatatTAGCATGATACTttggtgccgatacgatatgtattgcgattcgatactgtgattttattgtgagTCGATGTTccgaacatattgctcaccatatatctgctgcagagggacgagagagagagccatgagaaacgagttttgatcagtcattgaAATAAAAGTTCTGAATacaaaagatggagaacaagaaATGAAAGGAAAATACTGGcattttggtgcaggtacaggcAAATAGCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU607373 lncRNA upstream 104820 66648557 ~ 66651510 (+) True G536409
TU607364 lncRNA upstream 169213 66583358 ~ 66587117 (+) True G536400
TU607358 lncRNA upstream 182479 66573556 ~ 66573851 (+) True G536394
TU607357 lncRNA upstream 182834 66573241 ~ 66573496 (+) True G536393
TU607356 lncRNA upstream 183938 66572059 ~ 66572392 (+) True G536392
TU607563 lncRNA downstream 152233 66928565 ~ 66932555 (+) True G536585
TU608018 lncRNA downstream 235839 67012171 ~ 67012394 (+) True G536994
TU608026 lncRNA downstream 260297 67036629 ~ 67036990 (+) True G537000
TU608030 lncRNA downstream 264028 67040360 ~ 67040589 (+) True G537004
TU608033 lncRNA downstream 271957 67048289 ~ 67048510 (+) True G537007
XM_021607342.2 mRNA upstream 2890 66748816 ~ 66753440 (+) True LOC110526393
LOC110526947 mRNA upstream 35889 66719808 ~ 66720441 (+) True LOC110526947
XM_021607339.2 mRNA upstream 108907 66609230 ~ 66647423 (+) False LOC110526392
XM_021607340.2 mRNA upstream 108907 66609275 ~ 66647423 (+) True LOC110526392
XR_005052447.1 mRNA upstream 154561 66601685 ~ 66601769 (+) True LOC118965116
XM_021607349.2 mRNA downstream 751810 67528142 ~ 67544856 (+) False LOC110526401
XM_021607350.2 mRNA downstream 751812 67528144 ~ 67544856 (+) True LOC110526401
XM_021608125.2 mRNA downstream 867482 67643814 ~ 67644573 (+) True LOC110526949
XM_021607367.2 mRNA downstream 960478 67736810 ~ 67753397 (+) False LOC110526406
XM_021607369.2 mRNA downstream 960478 67736810 ~ 67753397 (+) False LOC110526406
TU607370 other upstream 152277 66602785 ~ 66604053 (+) True G536406
TU605959 other upstream 906889 65847623 ~ 65849441 (+) True G535150
TU605427 other upstream 1595000 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 1638374 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 1909226 64790322 ~ 64847104 (+) True G534453
TU608020 other downstream 236888 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 327974 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 328079 67104411 ~ 67104862 (+) False G537029
TU608056 other downstream 328079 67104411 ~ 67104908 (+) True G537029
TU608066 other downstream 333344 67109676 ~ 67110628 (+) True G537032

Expression Profile