RNA id: XM_036980758.1



Basic Information


Item Value
RNA id XM_036980758.1
length 2706
RNA type mRNA
GC content 0.52
exon number 8
gene id LOC110526397
representative False

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66804358 ~ 66819558 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gctgAGGGCTGTGCTACAGGATGCTGAGAGCAGAGCAGTGGACACAGAGACAAGGCTGCAGACCCTGACCAGGTCCCTGGAGCTGTACAGGGTCAAGTACCAGGCCTGCCTCACCAAGATCTCCCAGCAGGACAGCACTCTACAGGCCCAGGACGAGGACCTGAAGGAAGCCAGGGCTCAGGTGGTGGAGCGGGACGAGCATGTGCTGCGTCTGTGTGCCCAGGCGGTGGTGTTGCAGGGGGGAGCTGAAGGCCCACAGTGCCCAGCTGGAGAGCGGGGATGGTGCCCTGAGCCAGCACCTCCGAGACACCCAGAGAGACCTGGAGTCCAGCCGCAAACACAGCCAGGAGTGTGAGATGGTCATCAGCACTATGAGAGACAGCACCGCCGCACTGAGACGACAGgtggaggaacaggaggagagtGTGGTGAAGAGCCAAGCTGATTTCTCTGTCTACAGAGCCAGTCACATCCGCTCTGACTCAGACTACGACTCCCAGCTCTGCCGCATCCAGGAACTACAACAGgcatTCTCCCAGACCGTGGAGCAGTGTGCCCAGGGTAGCCAGGACctcagtgtgtgtcagtcagaGGTTCCTCAGCTGAGAGAGGAGGTGTCCAGACTCACCCAGCTCAAGGACAACACTGTGGCAGaggTGCTGCGACTGCAAGAGGCTGGGAGGCAGCTCCAGGCAGAGGCCAGGATGGAGGGCCAGCGCAGGCTGGAGGAGGTGGGAGCTCAAGAGCAGAGGGCTGCCAGGCTGGAGCAGGACCTGCAGGCCGCCCACAGACAGTGTGCCAAGAGACAGCAGGCAGTGCAGATGCGGGATAACCTCCTGAGGCGTTCGAAGGCTGACCTGCTGGAGGCCCGGGAGACTCTGAGGAGTCGGGCTGTGGAGGTGGAGCGGTAGGCAGCTGCAGCCAGGGTCCTGGAGGCTGACGTCTAGAGGGGCAGGAGGGAAggacagcagagagaggcagagtgtgGCTCTCTCAGGACCCAGCTGGGAGGAACTAAAGGAGGCCCAAGGATGCTGCAGGGACATGGGACCCAGGTGGAGAGGCTGAAGAAGGAGGCAGGGGAGAGCAGGCAGGCCCAGCTCAGTGCTCAGCAGGAGGCCAACACACACCAGCAGAGGGCTCAGCAGCTAGAGGCAGAGCTGACCAACACCAAGGACACACTCAGGACTCTACAGCAACAGCTGCAGGAGCAGGCTGATGCCAGCCAGGCACTGCGGGCAGAGCTGTCCCAGGAGCAGGCCAGGCAGCAGTAGCTGCAGGAGAGGAACCAgggggccagggagagagagggtcgacTGGAGTCAGAGAGAAACCAGCTCAGAACCAGCATGGAAGCAGCTCACAGCTCACAGAGTCAAACACTATAATTaatcaataaggcacctcgggggtttgtggaatatggccaatataccacggctaagggctgttcttatgcacgtcGCAACGCAgaatgcctggatacagcccttagccgtggtatattggccataaaccacaaaccccagaggtgcctcattgctattataaactggttaccaatataATTAAATGTTTTgatatacccgtggtatacggtctgatataccactgctGTCAGACAATCTCCATTCAGGCTTGaaccaaccagtttataatgtatATAAAACTAGCACTCAACTAGACATGTGCAGTCAACAACTCAGCACTCAACCAGGTGCTTTCACACACATACTAATGTATCCAAAAGCTAGTGCTCAACTACAAATATGCGGTCAATAAATTCAcacatattgcaaatgcatgtCACACTCACACAACCAACAAATGTTaattatactgtagtgttttgtcTGTTGATTTATGACTAAAGGCAATATTCCAACACAAATAATTTAGTGTCAGTGAACGTCATGAATTGAACCTGTGCTTGCTGACAGTTAAAAGTTTCAAGAGGCATTTTTTGGCTTTACATGTTGTTTTTCTATTCATCAGGAGAGCATCTTCTCCTCACATAGTGTCTGACTGAAGCCTGGCTACACTCATCTACAATCCACTCAGATTCCCCCTCCAGCCATGCTCGCAAATTGAATTAGTTTCCGTCTCTGAATTTGTGTTTCAAAAATAGTAATTATTTTTTAACCCCAAAGGAAGCAAGAGAAACGAGTCAGATCTGCACACGTCATGAATTTTGTGAAATAATAGTTTTCCACCAGCCAAAGGGATACAAGCCTGAAGCGCGGCAATTTACCAACTGTTCAGCTGCTAGGAAATTAAATTGAAGCACATAATTCATATCTTTAGAAAGTTAAATCAATCTGATCAAAAAGTTTCCCACTCAATTACGGCCTGAAATTAATCTCCTTAATCCCAATTTTAAATCTGTCATGCATATAAGTGCAGATCTCTCATCTATCTGCCCATCCATGTGACTTAATCCTGGAACAGAGAGCTAAAATGGCGCTGCGATTGTCAGATTTAGTCCCATCTATCTTTGAGCCTGATATACACACAGTGGCACACACACCTGATGGGAGCTCTGATAGGGGTGTGTCTGCTGTCTGTCCTACAGTTGAGGGAGCGGGAGAGGACTGTGGGGTGCCTGCAGGAGCGTGTGGTCGAGCTGCAGAGCACCACCCAGAGGCTGCAGGAGGAACAGACAGCCTGCCAGGCTCAGCTGTGGCAGTGAAGGAGGGAGCTGGAGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU607829 lncRNA downstream 50917 66751141 ~ 66753441 (-) True G536832
TU607732 lncRNA downstream 198571 66605531 ~ 66605787 (-) True G536742
TU607731 lncRNA downstream 198944 66605177 ~ 66605414 (-) True G536741
TU607730 lncRNA downstream 199508 66604651 ~ 66604850 (-) True G536740
TU607729 lncRNA downstream 200317 66603213 ~ 66604041 (-) True G536739
TU607919 lncRNA upstream 63696 66883254 ~ 66884892 (-) True G536897
TU607922 lncRNA upstream 65392 66884950 ~ 66885948 (-) True G536899
TU607987 lncRNA upstream 157647 66977205 ~ 66977656 (-) True G536964
TU607990 lncRNA upstream 161717 66981275 ~ 66981507 (-) True G536967
TU607991 lncRNA upstream 162659 66982217 ~ 66982437 (-) True G536968
LOC110526387 mRNA downstream 299303 66499996 ~ 66505055 (-) False LOC110526387
XR_005052201.1 mRNA downstream 316331 66485280 ~ 66488027 (-) True LOC118964921
XM_021607327.2 mRNA downstream 351706 66448244 ~ 66452652 (-) True LOC110526385
XM_036980741.1 mRNA downstream 365751 66406013 ~ 66438607 (-) False bco1
XM_036980739.1 mRNA downstream 385486 66406013 ~ 66418872 (-) False bco1
XM_036980757.1 mRNA upstream 7696 66827254 ~ 66863964 (-) False LOC110526396
XM_036980756.1 mRNA upstream 7696 66827254 ~ 66872098 (-) True LOC110526396
XR_002473947.2 mRNA upstream 103399 66922957 ~ 66971024 (-) False LOC110526398
XR_005052206.1 mRNA upstream 103399 66922957 ~ 66971027 (-) False LOC110526398
XR_005052204.1 mRNA upstream 103399 66922957 ~ 66971030 (-) False LOC110526398
TU607613 other downstream 254384 66549367 ~ 66549974 (-) True G536630
TU607649 other downstream 299333 66500388 ~ 66505025 (-) True LOC110526387
TU607202 other downstream 522739 66277202 ~ 66281619 (-) False LOC110526379
TU607101 other downstream 528069 66262486 ~ 66276289 (-) True G536183
TU606664 other downstream 1178386 65623989 ~ 65625972 (-) True LOC110526365
TU609527 other upstream 1322693 68142251 ~ 68144907 (-) True G538277
TU609730 other upstream 1690757 68510315 ~ 68516681 (-) True G538460
TU610131 other upstream 1987855 68807413 ~ 68811230 (-) True LOC110526447
TU610756 other upstream 2129962 68949520 ~ 68953664 (-) True LOC110526455
TU610759 other upstream 2183185 69002743 ~ 69005665 (-) True G539306

Expression Profile