RNA id: XM_021607350.2


Basic Information

Item Value
RNA id XM_021607350.2
length 2612
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC110526401
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 67528142 ~ 67544856 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTGATAAGAGAGTCGCAAACAAACAGTGGGCCAaatctcagtgtctctctctttccctcctttagAAGGCTGTTTGGAATCTGTCACACTGATCTGGAACATTAGCTACCAGCTAAATACATACTGGATAACTTGTTCTGTTATACAACCTGAGTAAGAATTGCCTGCCAGGAATACTGGGATGAGAAAAGGAAGAATCTAAAAGGTACACATGATTCACTGGGCCAAGGAAAACATCAGCATTCGACAGGAACCAGGACTTTGGAGGCCTGTGACGAGTGGAGGAATAGCAGCGTCACACAGAATGACAACACATTGATTTACCTGAGCTAGACAATCAGGAAGACACAGAGGAATTAAGTGATTGCGCTGAAATAGTGGGTAATTTTGGAACAGAGTGGTGAACTGAAGAGGAAGGTCGTGCAGCAGCCTGTTCTGGTTCCTTTGCTCATATAAATCAGTATTTTATTTGGGCCTAGTGTGGCCTCCTGAAGCAGTGACCAGAACCATGAAGCTGTCAGGGAATGTGCTGGATCTGGACTCCACAGACTACAGCACCACCCTTGATCCCTCCTACACCATGCTGGAGTTTGACAACCTCAGGGTATTTCCTGTAGAGACAGAGTTGATGATGCCGGAGCCTGCCCCTCTGCTGCCACAGACCAATGGGAGCGTGTGTTCCATATGTGCAGACAGAGCCACAGGTAAACACTACGGTGCTTCCAGCTGTGACGGCTGCAAGGGCTTCTTCAGGAGGAGCGTCAGGAAGAACCACGCCTACACCTGCAGGTTCAGCAGGCAATGTGTTGTGGACAAAGACAAGAGGAACCAATGTCGTTACTGCAGGCTTCGGAAATGTTTCAGAGCAGGCATGAGAAAGGAAGCTGTGCAGAACGAGCGGGACCGCATCAGCAGTcgcagaggagagggacaggggttGGGCACTCTGTCAATCAGTGTACTGCTACAGGCAGAGGCCAGCATGCATCAGTTTCCAGCCCTGACCTCCCCTATGAGCTGTGACATCAACACCAAGAAGATAGCGCTCGTGGGGGACGTGTGTGAGTCCATGAAGCAGCAGCTCCTCCTGCTGGTGCAGTGGGCCAAGCGCATCCCCGAGTTCTGCAGCCTCCCCGTTGACGACAGGGTATCCCTGTTACGAGCCCACTCTGCTGAACACCTCATCCTAGGGGTGGCTCGACGCTCCCTGCCTTACAATGACATTATCCTTCTGGGTAATTACTTTGTGATCCCAGTGAGCGGTCCTGAGGTGGAGGTGTCCAGGGTGGCTGCCCGGATCCTGGAGGAGCTGGTCAAGCCTCTGAGAGAGCTGGACATCACCGACAGCGAGTTTGCCTGCCTTAAAACCATAGTCTTCTTCAGTCCTGACTGCCCAGGGCTGGAGGCCCCTCAGACAGTGCGTCGGCTGCGTTTCCAGGCCCAGGTGCTGCTGGACGAGGCCACCTGTGAACAGCGGGGGCGTTTTGGAGAGCTGCTGCTGATGCTGCCCCCCCTGCAGAGTGTGGCCTGGCAGATGGTGGAGACCCTGCAGCTGGCCAGGCTCCTGGGGGAGCCCAGCGTGGACAGCCTGCTGCAGGAGATGCTGCTGGGGGAGGGGGCCACTGGGGGCCTGAGACAACGCACAGGGCACGGTCCTAACTCAAATGTAATGGCGTTCCCCCAACCCCAACATCACACCTTGTCTCAGGACCTACTAGGAGGCCATGCCGGGTTGCCTAGCAACTTCAcatcagtcatcctacctgttcCTAGCTCTCTGCCAGTGGTGCCTCTGGTGCCCACACAGACTGGCACTGAGGTGTACAGACATGGAGAGGGGGCAGACATGCCCATAGAGTCTGCCCACAGCATGCCCATGGCTCCTGTCCACACCTGCCTCTGAGAAGCAGACCAAGCAGCAGCAGCTACTATacagagaggagtgtgtggtctaaacatgcacacacacacacacatctaatccGGCCCGCGTTTGGTTTGAGTAAAatgtttgttttagtttttttaaatAACCACTTTGAGGAAATACAACACATTTTCAGTGCAGCCCTCCGAGCCTCATTGAAGACCAAATGCGGCTCCTGGGGCAAAATGAGTTGCACACACCTGACCTGGTGTTGGTGCATCCAGGCCGTACTACTATATGAACACAACATGAAGTAGAGGCTGTTACATGGACACTACTAACCCAAAAATGGACTTTGACTCAACCAGCCAGTCCTCTCCCTTATCCACCTTTGCACAATGCACATTACACACAGGGAATATGATGCACACAATTAATAATTGATCAGGAATTGTTCTTTATGTTAACCATTCACTGACGATTAAAATCATCAAATCAATAAAGACCACAGCTCAATGGTATGTTATCTTTATTAGATCATGGTTGGGTGagtgagttgtgttgtgttggcatGTTAATTAAAGACAGTGATGTCGCAGTGGTGAAGTAAGAACAATTTCATGTTTTTTATATTCAGGATCATTGTCCATGCAGATGTTGGTActgttaaacattttaaagttactcataaaaatgtatttttttttaaaggaaataaatgaaaaatacatTTGTAGAGCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU608499 lncRNA upstream 11722 67516177 ~ 67516422 (+) True G537448
TU608498 lncRNA upstream 12064 67515796 ~ 67516080 (+) True G537447
TU608474 lncRNA upstream 37269 67490629 ~ 67490875 (+) True G537423
TU608450 lncRNA upstream 69811 67458044 ~ 67458333 (+) True G537399
TU608424 lncRNA upstream 101291 67426542 ~ 67426853 (+) True G537373
TU608525 lncRNA downstream 32221 67577077 ~ 67577389 (+) True G537470
TU608528 lncRNA downstream 34860 67579716 ~ 67583897 (+) True G537473
TU608585 lncRNA downstream 54885 67599741 ~ 67600186 (+) True G537528
TU608586 lncRNA downstream 55705 67600561 ~ 67603899 (+) False G537529
TU608587 lncRNA downstream 55705 67600561 ~ 67631667 (+) True G537529
XM_036980753.1 mRNA upstream 751812 66756330 ~ 66776332 (+) False LOC110526948
XM_036980755.1 mRNA upstream 751812 66756330 ~ 66776332 (+) False LOC110526948
XM_036980754.1 mRNA upstream 751812 66756364 ~ 66776332 (+) True LOC110526948
XM_021607342.2 mRNA upstream 774704 66748816 ~ 66753440 (+) True LOC110526393
LOC110526947 mRNA upstream 807703 66719808 ~ 66720441 (+) True LOC110526947
XM_021608125.2 mRNA downstream 98958 67643814 ~ 67644573 (+) True LOC110526949
XM_021607367.2 mRNA downstream 191954 67736810 ~ 67753397 (+) False LOC110526406
XM_021607369.2 mRNA downstream 191954 67736810 ~ 67753397 (+) False LOC110526406
XM_036980769.1 mRNA downstream 191954 67736810 ~ 67753397 (+) False LOC110526406
XM_021607363.2 mRNA downstream 194566 67739422 ~ 67753397 (+) False LOC110526406
TU608066 other upstream 417516 67109676 ~ 67110628 (+) True G537032
TU608056 other upstream 423236 67104411 ~ 67104908 (+) True G537029
TU608058 other upstream 423282 67104306 ~ 67104862 (+) False G537029
TU608055 other upstream 423282 67104411 ~ 67104862 (+) False G537029
TU608020 other upstream 509491 67013220 ~ 67018653 (+) True G536995
TU608672 other downstream 209700 67754556 ~ 67756618 (+) True G537606
TU608686 other downstream 221900 67766756 ~ 67767613 (+) True G537617
TU609823 other downstream 1134521 68679377 ~ 68681652 (+) True LOC110526436
TU609862 other downstream 1159542 68704398 ~ 68704696 (+) True G538561
TU609930 other downstream 1266263 68811119 ~ 68811890 (+) True G538607

Expression Profile