RNA id: XM_036980764.1


Basic Information

Item Value
RNA id XM_036980764.1
length 3712
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC110526402
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 67577741 ~ 67594801 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGAGTGACTAAAGAAAGAGGAGTTAAGATTTGTTTCCCTCATCGCCCGTTCAGCGGGGTCTCTATATAAAGCACTGCGATGCCGTGGTAAAGTTAATCAAAAGTCACAAAGTTACTCTGCCCTCTAGGACCGCAGCCAACGAGTACAGCTCCACTTCAGCACCAATTTAGCAAACGGGAAATACTCAACCGGCGCAGAAGCTTTTGGATAATTGCCGATAATTGCCAGTGATTgagCATTGTCTCTGCTGCGCTCAGAACCAGAGCTCACACAAGGCTGCCCACTGTAGTCTGCCTACCCAGAGCCTTAGACACAGACGCCCAGAAACCCGTCCCAGAGACCGGAGATGACTGCTGCCATGCCCTTCTGGCTCTCAGCCCTCACCCTTGCCCTCAACCTCCTGGTCCTCTCTGCCAGGGAAGGAGCTGCCCTTTTCCTGCCTGACTCCAATGAGCTGCGGCAGCTACTGAGCCGGTACCAGGATGACCAGAACAGCACCGATAACACAGCGGGTAGTAGGACCCGACGGGCCATCCAGTGGACAGACCGCGGGGAGATTCTACAACTGCACAACAAACTGAGAGGACAAGTCTACCCCACCGCATCCAACATGGAGTACATGGTCTGGGATGATGAGCTGGAGAGGTCAGCCACTCACTGGGCAGAGGCATGCCAGTGGGAACATGGACCTAATGACCTGCTCATGTCCATCGGTCAGAACCTCGCCGTTCATTGGGGGAGGTACCGCTCCCCGGCCTACCACGTCCAGGCCTGGTATGATGAGGTGAAGGACTACACCTACCCCTACCAACATGAGTGCAATCCCTGGTGTCCCGACCGCTGCTCAGGGCCCATGTGCACCCACTACACCCAGCTGGTCTGGGCCACCACTAGTCGTGTGGGGTGTGCAGTGCACGTTTGTCCCAGGATGAACGTGTGGGGGGAGATCTGGGAGAACGCTGTTTACCTCATCTGTAACTACTCCCCCAAgGGAAACTGGATCGGAGAGGCCCCTTACCAACATGGCCGCCCATGCTCCCAGTGCCCTCCTAGCTATGGAGGAAGCTGCAGGGACAACCTCTGCTTCAAGGGGGACTCTCAGCGTTCTGAGACTGAGGACATGAACGAAGTGGAGAAAGCTCAGATTCCCATGTCACCCCGCACCACCACCAAGCCTGTCCACAGACCCCAACCCAAGCCTGCTGCTCCCAAGAAGCCCTCCACTCCCAAGCCTTCTACTCCCAAGGCTCCCACCAGCACTTTCCTGGCCCAAAACATCAAATGTGAGACCAAAATGCGTGACAAGTGCAAGGGAGCAACCTGCAACAGATTCAACTGCCCTGCTAACTGCCAGAACAAGAAAGGGAAAGTGTGGGGGACGCTCTTCTATGATGTGCAATCAAGTATCTGTCGTGCTGCTATGCACTATGGCATCATCAATAACAATGGTGGTCTGGTGGACACTACGAGGAAAGACAAGTTGCCATTCTTCGTCAAGGCAACAAAGAACGGCATTGAGTCATTCAGTAAATACAAAGCCGGCAATGCATTTGTGGTGTCCAAAGTGGAAAGACAATCAGTGGACTGCTATGCAACAGTGGCGGAGATCTGCCCCTTCAAGAAGCCCTACTCCAACTGCCCAAGAGTGTTCTGTCCGGCCAACTGCAAGAATGAGCCATCCTACTGGGCTCCGGTGGTTGGGAACAGCTTCTACACAGAGCGCTCCAGTATCTGCCGGGCAGCCATCCATGCCGGGGTGATCCAAGCCGGTGGAGGCTACGTGGACGTCCTGGCCCTGGATAAGAAGAGGAGTTACGTTGGTGTCCTGAAGAACGGCATCCAGTCAGAGAGTAAGAGCAATCCAGAGGGTGGCTCGTTCCGTGTTTTTGCTGTGAGGGAGTGAGTCTCCTCCATCTCAGGGCCTCCCACTCATTGGTTCAGGGACTAACAGGGTCCCCCATCTGCTCTCAAGGGGCAGGAAGTGCCCACAGGTTCGATGCCATGgcaactcctcccatctgtctctgtctcccactctggGAGGAAGCAGAACTTCTCATTGGACCAACAGACACTTCTCCCTCTTAGCTAATAAACAGTAACTGACTGCTCAATTCGGTGGCTAACATCACAAAGAACCCTTCTGCCTTCTCCTACCCTTCTCACCTTTAAACCCCAGATGTGGATATTTTTGTAAGATACACAAACGTTAATGCAAAATGATGTGTAACATCAAAGACCAATAGAACAGCTGGTGCTGGAACTCTGCGTCTTGACATGTAGttagatttcaaatcaaatgtcataTTTGTTTATATTTTATGTTCTTAATACAAAAGTGAATCATTGGTCTCCATGCACAGGAATGTATATTGATCACTGTATTTAATCATTCTGTACAGATTTAATTCATTCATTTTTTCCTTCTTAAATGAGTGTATATTGACAGTTTTATGTGTTTATAATGTATTTTGTAGCTTGTCTCTGCTTTCCTAACCCATTTATGCTTTCATCGTGGTCTTTACCTTTGGCGGATAGGCCATGGTGCTTGAGTTAGGAGAGGATCTGTGTTTGGCATGCTGGACGAGCTCacagtggacagacagacaggcagacagagacagacagacagacttaggGGTTGCATCggaagggaaggggaagggggaggaggaggaggaggaggaggaggggaaggcaTACCTCCAAGGAAAAGAAACCTTTCCTGAATACAGCTTGTACGACTTCCAGTGTCAATAATGTTCAGACGATCTGGTTAAGGTACAAAAACATTGTAGCAATATTCTGTCCACTGTGAGCTCAGGAAGGCAATGGGAGCTTGTGTGGGCAGGGCTTTCAAAATGGTGGCATATCTGGCTTCATCCGAGGACATTCACAGATGAACAATGTTCTTGTTTGATAAATGATTCTCTATTTATAATAGCTCACTGCTTtcttcccccctttcctctcttgaTGCCATGTGTTTTGATTGAATAAGAGAAATACTCCAAGATAGGTTGAATTTGTCTCCACTTAAGACAGTTGAATGTTGTAGGTTTTGTAGAAAGAGGGTCTTATACAGTCCAATGTGAGAAAGGTGTGCCAAGTGTTCCTATCAGCAGGCTTAGCTTCAGTTAGGATTCATTCACTAGGTAATGATTTGTAAATTACACAGAGGATGCAGAACATGGATCGGTTTAAACCACTCATACCCAGTTACTTATCCAGAAGGAAGGCACACAGAGGCAGGCTTCAGTTGGGGGATATCCTCTTAAATGCTGAGACTTTGTCGTGAGAGGAGAGTAAATCTATGTACATTTATGCTGGAGGTTTAGGGTCTCCTAAAGAAGGGCATTAGGTATCCTCTATCTATCCCTAGGCTAGACTGGACAGCAGTGTAGCCATTCTCTCTTTGTTTTAGATTTCATATTTCTATGTTTTTATTAGGCTACCTCAGTCTTATAGTACATGGGCAATCTTAAAGGAAATGGTAATGGTTTGTACAGCTTTGGAAATGGAGTGTAATACTTTGATTTGTCTTTTctgaactgttctctctgctgtaaAAGCCTTCTTTCTAAATATATGTGTTGTGTTATTTTCGTTTGTTTGCCTAGTTTGTATGGTGTTAATAGGCATTGGATGGgcttttgtatttttattttttttgtacaatTTGAAAATAATTAAAGTTTGAAATAGTTagaa

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG:

id description
K24243 CRISPLD; cysteine-rich secretory protein LCCL domain-containing

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU608571 lncRNA downstream 3915 67573394 ~ 67573826 (-) True G537514
TU608566 lncRNA downstream 15693 67561801 ~ 67562048 (-) True G537510
TU608552 lncRNA downstream 56758 67520762 ~ 67520983 (-) True G537497
TU608542 lncRNA downstream 67607 67509660 ~ 67510134 (-) True G537487
TU608539 lncRNA downstream 70953 67506516 ~ 67506788 (-) True G537484
TU609230 lncRNA upstream 97333 67692134 ~ 67692451 (-) True G538083
TU609176 lncRNA upstream 108714 67703515 ~ 67711904 (-) True LOC110526405
TU609246 lncRNA upstream 154906 67749707 ~ 67749930 (-) True G538099
TU609248 lncRNA upstream 155683 67750484 ~ 67750735 (-) True G538101
TU609272 lncRNA upstream 156697 67751498 ~ 67756591 (-) True G538110
XM_036980760.1 mRNA downstream 401085 67005295 ~ 67176656 (-) False LOC110526399
XM_036980761.1 mRNA downstream 401085 67005295 ~ 67176656 (-) False LOC110526399
XM_036980762.1 mRNA downstream 401085 67005295 ~ 67176656 (-) False LOC110526399
XM_036980763.1 mRNA downstream 401085 67010302 ~ 67176656 (-) False LOC110526399
XR_005052203.1 mRNA downstream 606710 66922957 ~ 66971031 (-) True LOC110526398
XM_021607352.2 mRNA upstream 5760 67600561 ~ 67639116 (-) False LOC110526403
XM_021607353.2 mRNA upstream 8923 67603724 ~ 67639116 (-) False LOC110526403
XM_036980766.1 mRNA upstream 8923 67603724 ~ 67639678 (-) True LOC110526403
XM_021607357.2 mRNA upstream 50459 67645260 ~ 67700057 (-) True LOC110526404
XM_036980767.1 mRNA upstream 108714 67703515 ~ 67736495 (-) False LOC110526405
TU607613 other downstream 1027767 66549367 ~ 66549974 (-) True G536630
TU607649 other downstream 1072716 66500388 ~ 66505025 (-) True LOC110526387
TU607202 other downstream 1296122 66277202 ~ 66281619 (-) False LOC110526379
TU607101 other downstream 1301452 66262486 ~ 66276289 (-) True G536183
TU606664 other downstream 1951769 65623989 ~ 65625972 (-) True LOC110526365
TU609527 other upstream 547450 68142251 ~ 68144907 (-) True G538277
TU609730 other upstream 915514 68510315 ~ 68516681 (-) True G538460
TU610131 other upstream 1212612 68807413 ~ 68811230 (-) True LOC110526447
TU610756 other upstream 1354719 68949520 ~ 68953664 (-) True LOC110526455
TU610759 other upstream 1407942 69002743 ~ 69005665 (-) True G539306

Expression Profile