RNA id: XM_021607368.2


Basic Information

Item Value
RNA id XM_021607368.2
length 2953
RNA type mRNA
GC content 0.52
exon number 6
gene id LOC110526406
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 67736810 ~ 67753397 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGAAGCTGTGCCTGTGTATCGCTGCAGTGCATTGGCAAAGCGACAGCAACGCAGGATTGTAGCTGCTCGGGGCTGCTGAGCAAATACCATCTCAGGCCGGTTTGGATAGGACCCCATCGCATTTTCTATCATTTGGAAATTATATATAGCTCGACAGGAGAGTGTTTTAAATTTAAGTGGATCAGATTGTAACCAAGCCATTTGGGCTTATTTAAACATTTTATATAGGCTATTTGTTTTGTATTCATTTAAATGACCCATACTCTCACCAATGGTGTAAGCTGTGTTCATCTCTACATGGGTAAACAATTTTGATCGGGCATcttgttatttattttaaatcattttttaagTGATATTGTTGTACTCTCGAAAGGGAGTCCCTTTACGGAATACAGCTGGATTGCATAGAGGAATCTTCAAATCTGTCTGGGCTAGGAGGAGATTCGATTTTTTTCCAACCGGGAGTGGGGGATAATATGTCCAGGCGAAAACAGAACAACCCCTTCAAAGTTAATTGTAGGTATCTCAGGGCCCTTCCACAGCACCGGCTTTGCAGGCCCCCTTCACACTATTAACATGGATGGCAGGGACGATTTCATTGAGGACAGCGAATGCCACAGCAACAATTCCCAACAGGACAGCATTTCAGGGCTGTGTTTGCCTCCATAGAAGACAGTGATAGCGACCTGGACAACCACGACTCATCCTCCAACACCTCAGCTGACGACCACATGACCTCCACCAAGAGAACACACCACAGGGGAGTTAAAGAAGAGAGTGAGGAGGGGGCCGACCTGATGAGcagctgtgtgtgtcctctgtgcACCCTGGAGTTCAGCAGCCCCGAGCAGCTCATCACACACGTCTACCAGCACACATCGTTGATGGGCAGCAGTAAGAACTACGTGTGCCCAGTCTGTGGGCGCACGCTCAGCTCGCCAGGCTCCCTGGGGCGCCACCTTCTCATCCACTCTGAGGACCGCCTCTCCAACTGTGCTGTGTGTGGGACACGCTTCACCAACACCAACAACTTCAACAGGGAGAAGCTCAGAGAGGTCCTGAACACAGGCAGCAGTATGGAATGCAGCAGCGGAGATGAGAACTGTTCCATGTCCCGGTCTCTCTCCAGCAGCCCCATGGGCAACCCCGGTCATGGCCTGGGACACGGCCACGGGCCCAGCCACAACCAAGGAAACAACCCTGGCCGTGGCACAGGCCACATCCCGGGACACAGCCACGGCCCGGGATACAACCCCGGCCACAACCAAGGACATGGACATGGCCCAGGACACAACCATGGCCAAGGTCTCGGACACCTCCCAGGCCACCCACTCCCTTCACTGCACCacagcctcctctcttcacccccctctTTCCCTGACGCCCTCAGCCCCTCACCCGGCCTACCCATGCTGCCAGACATCCTGAGCCCCATGCCTGTGCACCCGGCCGGAGTGCTGCTGGTGTGCAACAGCTGTGTGGCTTACCAGCAGCTGGTGGACGCCCAGTCTCCCATGAGGAAGTGGGCCATGCGCAGAAAGAACGAGCCGGTGGAGGCACGCATGCACCGTCTAGAGCGCGAGCGCTCCGCCAAGAAGACCAAGCGGGAGCACGAGTCACCCGAGGAGCGGGAACTGCGGAGGCTGCGGGACCGCGAAGCCAAGCGGATGCAGAGGCTGCAGGAGACAGAGGAGCAACGGACACGGAGGCTTCTGCGTGACAGGGAGGCCATGCGGATGAAGAGGGCCAACGAGACGCCAGATAAGAGGCAGGCCAGGCTGATCCGGGAGAGAGAGGCCAAGAGACTGAAACGGCGGCTAGAGAAGATTGACCCCTCCCTGAGAGGTCAGATAGAGCATGACCCAGCTGCTATGGCTGCCCTGACGGCAGACATGAGCCTGTTCCAGTTCCCCTGCCCCATGCCTGTCCCCTCTCTGGACAACAGCCTCTTCATGAAGCTGCCCTAGCAGGACCAGGTCACTGGGGGCAGCACACTGGGCCACTAACAGTTATAATGGCCTCTCCACTACGCCTGTGGGTTGCCATGGCCACAGATGGAACCATTCCATGCTGGTTGAAATTCCAGCAGCTTCTGTGTCCAACGACTTGATACCCGAACTCCTGTGTCAGCAAATAACATTAATTTATTACAGACTAGCAGGAAATAAGAGCAGGTTCAAGAATGTTTCACTTAATGGTAGGTATTGATAAAGCATGTTGTAAAGAGATTTTATCTGTTCTGTTTTGGGGGCAAGCAGACTTTGACATACCAGCCCATTGTGACAGGAGGAGTTACACCCTTCCATCTTTTGTACATGGACCTTCAGGGGTGGGAATGAGTCACGTAGCCCATAGCTCTCTCCCTCGCCTCTTGTCCCTTCTGCTAGCAAAGTCACTGGAGTTTACTGGTAGCTACACCTCTCTCACGCTGCCAACGTGGGTCTCTGCTCTGGCTAGCTCATATCTACCCAATCAACTACCTCAGTAAGGGGCTGAGGCCGAGCCCTCTGTGGCCTACGTTCTGACTCCAAGCTTCTTTACACGTTACACTACAGAAGAGAATGCAGGTTTTTTCCTTAGTTTGAGGGTGTGTTTATCTTTAGGACGTATTCACAGCTCACCAGGAGAATATTCAACAGGACAGAACATTCAGTAAGACATAGTCAGAAATGTACTGTATAAAACGGGAACGATAGAAAACGGGCCTGTTCTATACATCACATTTCTATCCGCTATGCTCTAAATATGCTGTACTATTTAATGATCCCTGTTTTGAGCAACATTATCCTCCATTCCAGCATATTCTCTTCAACTCAAAATATACTGCCACTACTGTAGGTCTCTTTGCCTTTTATTAGTCACATTGACCTTCCTTACTCTGTTTTTCCCTCGTACCTTCAACACTTAACCTTTGCCAAGTAGTTGGTAATAATTTCCTTTTTACATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU608650 lncRNA upstream 30702 67703515 ~ 67708720 (+) True G537589
TU608592 lncRNA upstream 104832 67607254 ~ 67634590 (+) True G537533
TU608587 lncRNA upstream 107755 67600561 ~ 67631667 (+) True G537529
TU608586 lncRNA upstream 135523 67600561 ~ 67603899 (+) False G537529
TU608585 lncRNA upstream 139236 67599741 ~ 67600186 (+) True G537528
TU608683 lncRNA downstream 3728 67757125 ~ 67760325 (+) False G537615
TU608681 lncRNA downstream 3835 67757232 ~ 67762036 (+) False G537615
TU608682 lncRNA downstream 3835 67757232 ~ 67760325 (+) True G537615
TU608703 lncRNA downstream 40542 67793939 ~ 67803569 (+) True G537630
TU608709 lncRNA downstream 42678 67796075 ~ 67806829 (+) False G537632
XM_021608125.2 mRNA upstream 94849 67643814 ~ 67644573 (+) True LOC110526949
XM_021607349.2 mRNA upstream 194566 67528142 ~ 67544856 (+) False LOC110526401
XM_021607350.2 mRNA upstream 194566 67528144 ~ 67544856 (+) True LOC110526401
XM_036980755.1 mRNA upstream 963090 66756330 ~ 66776332 (+) False LOC110526948
XM_036980794.1 mRNA downstream 95877 67849274 ~ 67897779 (+) False LOC110526410
XM_036980795.1 mRNA downstream 95877 67849274 ~ 67897779 (+) True LOC110526410
XM_021607377.2 mRNA downstream 206417 67959814 ~ 67973591 (+) True LOC110526412
XM_021607380.2 mRNA downstream 253631 68007028 ~ 68116406 (+) False adam10a
XM_036980803.1 mRNA downstream 253641 68007038 ~ 68116406 (+) False adam10a
TU608066 other upstream 628794 67109676 ~ 67110628 (+) True G537032
TU608056 other upstream 634514 67104411 ~ 67104908 (+) True G537029
TU608058 other upstream 634560 67104306 ~ 67104862 (+) False G537029
TU608055 other upstream 634560 67104411 ~ 67104862 (+) False G537029
TU608020 other upstream 720769 67013220 ~ 67018653 (+) True G536995
TU608672 other downstream 1159 67754556 ~ 67756618 (+) True G537606
TU608686 other downstream 13359 67766756 ~ 67767613 (+) True G537617
TU609823 other downstream 925980 68679377 ~ 68681652 (+) True LOC110526436
TU609862 other downstream 951001 68704398 ~ 68704696 (+) True G538561
TU609930 other downstream 1057722 68811119 ~ 68811890 (+) True G538607

Expression Profile