RNA id: XM_036980797.1


Basic Information

Item Value
RNA id XM_036980797.1
length 4711
RNA type mRNA
GC content 0.55
exon number 15
gene id LOC110526411
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 67903147 ~ 67953636 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttattttgaaggcgaaTCGCAAATTCCAGGCACCTTTGTGGcgaatccttattgtggctagcttcacacaaGTCCAGCAACCCAACCTAGGTGCCAGCGAGAGTAAACGGACGAGTCGAGCTGGAACTAGGTTGGTTGCGGGCCCGCCAATGGACCTATAGGAGCTAGCGGAAGTTTAGTTGGCATTGCGTCTGCGTGGACCAGGCAGCATGAAGAGCGAGGTGCCCTCTGAGGCCCAGGGTAGACAGGAGCACCTGAAGGGTCCGCTGGCCAACCCAGAGCCCATGGAGACGGCTAAGAGCTTCCCTGCCAACATGGAGGTGATCGGCAAGGCAGGCAGCGAGTTTGCACCACTGTGTGCCGATACCAGGCACCGGCCCCTGAGGGACATAGGGGCCCGCAGAGACCCAGACAGGGGCCAGCCTGGACGCAAAAAGCGCAAGAGCCAACAGCCAGGGCCCTCGGACTGCTCCCTGAAGGAGGGTCGTGTCAGTGAGGGCTCTCTTCTCCTTCAGCGCCACCAGCCAGATCTCTTGGAGCGACGCAGTGAGGACGAACGCAACCCAGAGTCCTCATTCAGTGACtgtgcctcctctccctcctccagccTGCGCTTCGGGGATTCAGATACTATGAGCtcagaggaagaggtggaggctGGAGGGACGGGAGCAGCAGGGGGACCGCAGCCAACACAGCAGGCGCCGGTCTCCACCACAGGGGGCGGGACAGGGGTGGGTCTGCGCACCATTCTGGGTCGGACTCGGGGAAGCCGCTCTCATAAGTGGGCACGGTCAGAGGTGGAGCCGGTGCTGCTGAAGCGGCCGTGCCTGAGCGGGCGGCGGTCACTGCATAGGAAGCGGATTGTGAAGCCTGGGTCCGGCGGCATCCAGCGGACTCAGAAGCAGAAAGAGCGCCTACTTCTCCAGAGGAAGAAGCGGGAGGTAATCGCTCGCAGGAAGTACGCGCTGCTCCACAGCACCAGCAGCTCCAGCGAGGAGCTGACCAGCGGGTCATCCTCACCCTCGTCCACAGAGGCAGAGGACGAGCTGTATGTAgacggcagcagcagcagccagccaAGCAGCGCAGCTGTGGCCACAGTTTCTCTGGATGAAGACGTGGTGGTGATCGAGGCGACCCCTGCACCCCCTGTCCCAGCCAGCGAGGAGATCAACGTCACCTCCACCGACAGCGAGGTGGAGATAGTCAACGTGGGAGATGGCTTCAGGCCTCGCTCGGTGGGGGGCCATGGCAGGATGTACTGGGGCCCCAGCTGCTCCCAGAACCGGCCCCAGGAGCCCCGCGGCCGCCACCGCCTCTCTACCGTCATCCAGCCTCTGCGCCAGAGCGCCGGGGAGGTGGTGGACCTCACAGTGGATGAGGATGATCTCTCTGTTGTGCCATCCACCTCTGACAGCATTCACCCTCAGACTGTCAGctcttcctcttcatcctcctctcatcATACCTCTACCTCAGAGCCCCACGATGCCCTAGGCCCCTCCACCAGCTGCCCTGGTCAAGGCCCAGCCCCAGACAGCACGCTGGCACAGGGGCCAAGGGGTGCTGCAGGCACGGAGGATGAGAGCAGAAGAGGATCGTCTGGTGTGGCAGGAGAGAGTGGGGGCACGGCCATGCCCAGGTTACCCTCCTGCTGCCCGCAGCACTCCCCCTGCGGAGGGCCCTCCCCTGGTCACATGACCCTGGGCCATTCCAGCTGCCTGCAGGCCCAGCCCCCCCAGCAGCCGGGCTCCCAGCAGCACAGCCACGCCCACCacttccaccaccaccatcaccatgtgCCTCAGCACCCACCTCCAACCACTCTGCCCTTTCCTGAGCCCAGCTGCCCCCTAGAGAGGCCCACTGCCCTGCCTGCACCATGCAGAGGGGGAGGGGTCAGCAGCAGCAGCTCCACCCAATACCACGACCAGCAGACTCTACCGGTGGACCTGAGCAACAGTGGCTTGCGGAGCAGCGGGGCCGGTAGTTTCCATGGCACCTCAGCCTTTGACCCGTGCTGTCCAGGCTCCACGTCTCGGCCCGCTGCCTACAACTCCCAGAATGCTACGGGGCCAGGGCCCAGCCAGCCCAGCGCAGTGGTGGACTCCTTCAGCTCAGCcatggtggcccagcctcagccacagccacagctatCCACCTGCAGGCACTTCATGCACCCCTCCTACGCCCCCCTGGCACGCTCCCTGCACCACCAGCCCTCTAACACCTGCCCCCATTCCCATGGtaaccctcctccccctcctcagcCCACTCCACAGGGTGACTACGTCATCCCCCACCCCGTCCATCCCTTCCACACGCCCCTGCCTTCCCACCCCCCTGGCCACGCCGTGCCCCCGCCCCCCCCTGCCCCTCTGCCTGCCCACCACCTCACAGGCTCCAGTGCCCCCCAACACCTGCCCGCGGAGCACCAGGCCCTGCAGCACCACATGCCTGCACTGGGGACCTCTGTGCAGAGGCTGCACCAGCACGAGATGCTGCAGAGGATGGAGGTTCAGAGACGCAGGATGATGCAACACCCCACacgaGCACATGAGCGCCCCCCTCCACACCCCCACAGAATGCACCCCAACTACGGCCATGGCCACCACATCCACGTGCCCCAGACCATGTCGTCCCACCCACGCCAACCTGAGCAGAGGACTGCGTGGGAGCTGGGTATCGAGGCTGGAGTGACCGTGGCGCCATATCCTTCAGGACACCTGCACCCTCACCTGCCCCACTACCACCCTCCCCCAAGACTGCACCACTTCCCCATCCCCTTCATGCACACTGGCATGTCTGAAGTAACCTACCCGCACATTCGCTACATCTCATCCAGAATGACTGGATTTGGACGAACTTATGAGGATCTGCTGCATTTAGAGGAGAGATTGGGGACTGTGAACCGAGGGGCCTCTCAGGGAACCATAGAGAGGTGCACTTACCCACACAAGTACAAAAAGAAGGTGTTGGAGACTGAGCGAGACATTGACGAACAGTTAACCCCTGAAGCATGGGCAACTATTGGGAAAAATATGCACGCAACCTCAGACTCGAGAAAGCTGCATGGTAAGCAAGAAGAAGATGAGGGGGCGGACGAAGACACAGAGGAGAAATGCACCATCTGTCTGTCAATactggaggaaggggaggacgtCAGACGCCTACCTTGTATGCATCTCTTCCATCAACTGTGTGTGGACCAATGGCTCCTCACCAATAAGAAGTGCCCCATCTGCAGAGTGGACATCGAGGCGCAGTTGTCTGCCGTTGAGAGTTGATGCTGTTTTTCTAACAACTCTTTGTTGGAATTTTCTTttattgttgtttattgtttgAATTTTTCTTCAGTACTGCAGTCAACCAAAGAGGGCATGAATTACCTGCGCAGATCCACTATGAGAAAATAAAAACATCAGGCTAAAGAAGCATTGAGCCTAGAGTGCCAGCTATCTATCACACAGTACAATACAGCTCGAATTGACATCTCCATTAAGGATTTAAAATGTTATTGTATTTATAAAGCTTTTATGTAGCTTTTGATTGTTTCCTCgtgtcatatttttttttttttttttgcatggctCCTCGCAATGCATTTCTTTGCACATATATTGTGGGCTTCTCACGGCCTAACAACTTGCAGGTGAGGATAGCTGCTCTAGTAAAGGAGCATTTCTATATACCTAATGCCTTGCTTTACTGGAGTAGAATGTCAACCTCCATTTAAAAACATTGCAGGACTCATTTTACCAATCATTGTATTGATTAGTTTATGTTTAGACAATGTGGTTTGCTAGTGGAAGACGTTTCTAAGAAGGTCAATCAAGACATTCCTTAATTAGGAAAATATCATGTTAAACTGATCAGCTGCTGTATTTGTGTTCACCCAGTATTTCTAGAGTGGGAATAAACTCAAACTTCACCTCACCTCCCAGAAAATGCACATGCGTGTCTTACACCTCCCCTGCACCACCTTGATTTGACTTAACACCATTCACAAGTCATCTAATGTATTTTAGAGAAAAAGAAAATGAATGTCACATCTGTTCTTGACTGTTCTTTTTCAATGGAATGATTGTTGAGGTCTGCTGAGGATACAGTCTCTGTGTTCTGTTTGGATTTCTCCCTCAGACAGGCCCCAGATGGAAAACTGGGTTCTATAAGGGGATCTCAGGCCCACAGATGCAACCAGTTTCACATGAGCCTGCAACCTGGGGATATCTGTTGTTTGGAACTGGGAATGGCATTGGTTTATCCTTGCTTTTTGTTTATCCCCGTTTCTTTTTTCAGAGGGAAATACACAGCGCTCAGCTCAGAATAATAAATAAGTAGCTGATTATTCTTACAACCCAGATCATTGTTCTTacccacactccctctctctctctctctgtagctgtgcAGCAGCAATCTCTTTGCTGCCATTGAAAAGATAACACTAATATTATTCTCGACTTGCTAACTTGCATATACTTGCacaagagagaacagacaggagtGTTGTGAAGAGAGTGCGCTGAGGCCATGTATTTCCATTCTGATTGCTGAGTTTTGGAGAAAAAATAATACTTTTGAATGGAGTGTTGGAATGCAGTACTTATGGCAGGTATCCATGCATTCATAGACTTAATGGCACCAGGATGATATTCCATGGGATTTATATTAGTTTTAAAATAATATTAATAAAGTTAGAACTCTT

Function

GO: NA

KEGG:

id description
K10635 RNF111; E3 ubiquitin-protein ligase Arkadia

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU609307 lncRNA downstream 20962 67880561 ~ 67882185 (-) True G538144
TU609281 lncRNA downstream 55146 67837647 ~ 67848001 (-) True G538119
TU609258 lncRNA downstream 81971 67813383 ~ 67821176 (-) True G538103
TU609256 lncRNA downstream 82055 67813383 ~ 67821092 (-) False G538103
TU609354 lncRNA upstream 53201 68006837 ~ 68010914 (-) True G538190
TU609363 lncRNA upstream 59550 68013186 ~ 68014567 (-) True G538199
TU609537 lncRNA upstream 211901 68165537 ~ 68169289 (-) True G538287
TU609547 lncRNA upstream 238780 68192416 ~ 68192755 (-) True G538297
TU609549 lncRNA upstream 240032 68193668 ~ 68193885 (-) True G538299
XM_021604937.2 mRNA downstream 2338 67898266 ~ 67900809 (-) False LOC100136691
NM_001124659.2 mRNA downstream 2368 67898282 ~ 67900779 (-) True LOC100136691
XR_005052420.1 mRNA downstream 71335 67831292 ~ 67831812 (-) True LOC118965086
XR_005052220.1 mRNA downstream 72238 67822238 ~ 67830909 (-) True LOC118964923
XM_036980790.1 mRNA downstream 78331 67822238 ~ 67824816 (-) False LOC118964923
XM_021607379.2 mRNA upstream 20016 67973652 ~ 68002518 (-) False mindy2
XM_021607378.2 mRNA upstream 20016 67973652 ~ 68002653 (-) True mindy2
XM_036980805.1 mRNA upstream 163177 68116813 ~ 68131519 (-) True LOC110526950
XM_021607381.2 mRNA upstream 184325 68137961 ~ 68160295 (-) True LOC110526415
XM_036981773.1 mRNA upstream 281218 68234854 ~ 68257368 (-) True LOC110526951
TU607613 other downstream 1353173 66549367 ~ 66549974 (-) True G536630
TU607649 other downstream 1398122 66500388 ~ 66505025 (-) True LOC110526387
TU607202 other downstream 1621528 66277202 ~ 66281619 (-) False LOC110526379
TU607101 other downstream 1626858 66262486 ~ 66276289 (-) True G536183
TU606664 other downstream 2277175 65623989 ~ 65625972 (-) True LOC110526365
TU609527 other upstream 188615 68142251 ~ 68144907 (-) True G538277
TU609730 other upstream 556679 68510315 ~ 68516681 (-) True G538460
TU610131 other upstream 853777 68807413 ~ 68811230 (-) True LOC110526447
TU610756 other upstream 995884 68949520 ~ 68953664 (-) True LOC110526455
TU610759 other upstream 1049107 69002743 ~ 69005665 (-) True G539306

Expression Profile