RNA id: XM_036980803.1


Basic Information

Item Value
RNA id XM_036980803.1
length 5530
RNA type mRNA
GC content 0.47
exon number 17
gene id adam10a
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68007028 ~ 68116406 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGCGGTTGGAGACAAGCGGTGAAAGGCGGTTGTGAAGGTACTGCCATAAACAGAGCGCAGACTGCGCCTTTAAGAAGTGCAAATCGAAACAGTAAAGCATTCGCGGTGTCAATGTACTAACAATGAATTTAATCGATATGGTCTTGATTCAATTCTTGCTGTTTAATGGCATATGGACCATTAAAGGTCCCACTCCATCTGGGTCTGACTACCGCTGAGTTGACTATACGCCTCATCTGTCTGACATCGAATGCATTTTTCATTTCCCTCACCTGTTTGCCATGGGATAAAAGACATATGCcgggtctgtttttttttttacctgctcTGATGGTCTGTTTTTTTCGTGTGTGTGAACACAAAGTCAGCATGGAAACCCTCTGAACAAGTACATCCGCCACTATGAGGGCCTGTCCTACGACACCGAGGCCCTGCACAGCAACCACCAGAGAGCCAAGAGGGCCGTCTCCCACGAGGACAAGGTCCTGCAACTTGACTTCCACGCACATGGAAGGCATTTCAATCTGCGGATGAAGAGGGACACCAGCCTGTTCTCTCCAGACCTCAAGGTAGAGATATCAGGAGTGGAGGCGCCCTACGACCCCTCCCACATTTACACTGGAGAAATCTTCGGTGAGAAGGGCACTTTGACCCACGGCTCGGTGGTGGACGGCAGGTTTGAAGGCTTCATCCAGACCCACCAGGGCATGTACTACGTGGAGCCCTCGGAGAGGTACCTCAGAGACAAGGACGTGCCCTACCACTCAGTCATCTACCACGAGGGGGACATCAaTTACCCTCATAAGTATGGGTCAGAGGGGGGCTGTGCTGACCACTCAGTGTTTGAAAGGATGAAGAAGTACCAGGCCTCGGCTATGGAGGAGCCTCTCAAGGAGCCCAGCAGtgtggtggaggaagaggagaggtccCATGGACATGGTCCGGTGATCCTGAGGAAGAAGAGAGCAGCTCAGATAGAGAAGAACACCTGCCAGCTCTTCATCCAGACTGACCACCTCTTCTTCAAGTACTACGGCACCAGAGAGGCTGTCATTGCACAGATCTCCAGCCATGTCAAGGCCATTGACTCTATCTACCAGGGTACTGACTTCCTGGGCATCCGCAACATCAGCTTCATGGTCAAAAGGATCAGGatAAACACGACCAGTGATGAGCGGGACATCACCAATCCGTTCCGCTTCGCTAACATCGGGGTGGAGAAGTTCCTGGAGCTCAACTCAGAGCAGAACCATGATGACTATTGCCTGGCCTACGTCTTCAGTGACAGGGACTTTGACGACGGGGTGCTGGGCCTGGCCTGGGTCGGAGCTCCTGCAGGGAGCTCCGGAGGTATCTGTGAGAAGAGTAAGTTGTACTCTGATGGGAAGAAGAAGTCTCTGAACACTGGCATCATCACGGTGCAGAACTACGCCTCCCATGTCCCCCCCAAGGTCTCCCACATCACCTTCGCACATGAGGTTGGACACAACTTTGGCTCTCCGCATGACTCTGGGACAGAGTGCACCCCAGGAGAGTCCAAGGCCCAGGAGAAGAAGGAGCAGGGGAACTACATAATGTACGCCCGGGCCACATCAGGGGACAAGCTCAACAACAACAAGTTCTCTATCTGCAGCGTGAGGAACATCAGCCAGGTCCTGGAGAAGAAGAGGGGCAACTGCTTTGTGGagTCTGGCCAGCCCATCTGTGGTAATGGTCTGGTGGAGGCAGGGGAGCAGTGTGACTGTGGTTACAGTGACCAGTGTAAAGACGAGTGCTGCTACAATGCCAACGAGGCCGACGGCAACAAGTGCAAACTTAAGCCCGGCAAAATCTGTAGTCCCAGCCAGGGTCCGTGCTGTACACCGACGTGCAACTTCAAGGGCTCCAATGATAAGTGTAGGGAGGAGTCAGAGTGTGCTGAACAGGGCATGTGTAACGGAGGCACTGCCCAGTGCCCCACCTCTGAACCCAAAGCCAACTTCACCGCCTGCCATGGAGACACACAAGTCTGCCTCAACGGGGGCTGCTCTGGCTCCATCTGTGAGAAGTATGGTCTGGAAGTGTGTACCTGTGCCAGTATTGAGGGAACAGATGAGACTGAGCTGTGCCACGTCTGCTGTCAGGAGAGAATGAAACCCGACACCTGCAGCAGCACGGGCTCCGAAAAGTGGGCCGGCTTCTTCAGCAAGAAGATCACCACGCTGCAGCCAGGCTCCCCCTGCAACGACTTCAAGGGCTACTGCGACGTGTTCATGAGGTGCCGGCTGGTGGACGCAGACGGCCCCCTGGCCAGGCTAAAGAAAGCCATCTTCAACGCAGAGCTCTACGAGAACATCGCAGAGTGGATAGTGGCTCACTGGTGGGCAGTGTTGCTGATGGGCATTGCTCTCATCATGCTGATGGCTGGTTTCATCAAGATCTGCAGTGTCCACACACCCAGCAGCAACCCCAAACTGCccccacccaagccactgccagGCAcgttgaagaggaggagacggcAGCAATCGAATGGCCAGCAGCCCCAGCAGCAGCGCAACCAACGCCAGCCCAGAGAGAACTATCAGTTGGGTCAGATGAGACGTTGAGACACTGGGCCCCTCTTTGCCTTGGTTCTTCCTAGTGCCTACAGTGGGAACACTTCACTCCAAAGAGTTACCTGTACCATTCATTGCAACCATCCATCTGCAAAACTAACTGGCAACAGAACTGATTTCAATAGACAAGACATACAGTTCCAGGACCTAACGGACTCACCCAACACCACTGCTCTGGGAGCCAGCCGAGCTGTCTTTCACACAGTTGTAAGCAGAGAATATTATAGGAAAGCTCTTGGCAATGACGGGAAGAGAAAATTACTGATTTCTGTTGttcttttttctttattttttcctgGAGTGCAGGGGAGCAGCAGCATTGTGGTAatgcagcctctcctctcctcctttttagCGTGTTTCATCTGTTTGTCCTTTCTGAAGTGCTGCCCTCCTGAGCAGGAAAACAGGACTGCAGATCACATGGGTTTTTGCTGCCATGCAAAGCCAGGATGTGAGACATTGCAGCAGAAGAGACTAATTTGCCAATGTAATTATTATTTTGTAATCAAAACATGATAAGAAAAAATGCACAGGCTTTTATTTCCAAAGCATACATGTTCTTTCTGCGTGCAATTGTACAGGTATTGAgatgtagattttttttctttgtatcatATGAAATCGATTGTTTTCCTGCTGTCTGATAAAGATTATTTACTGTTTTAATTCACTCTCTCAGGattaataaaacaaaaaacagccctatctgtcACATTTAGAAGctgctgtggggtggatcagaaCAGACCTCGGTTATCAGAACATGGAGGGAATGTAAACATAAAGCTGAATGTGATTAAAGCAGGGTATAGAGAGGCGACAGAGATGTAGAGACTGTTGTGATATTCGGATGTGATATCGGAGGATATCATTGGGCTGGTGGAAGGTGTCATTTTTAGACAGGTTTGCTTCTAGAGGTGCAGTTTGGGGATGCAACTGTAGCTTTTAAATTTTTTACTTAATTATGGCATATTGTTCTCTTCAGCAATTTTTTTCTGACTCaatgcattgatgtgaatcactgAACCACTAAATACAGCAGATGTACCTTGTCTATTGATCATTCCATGTGAGGGATGGTTGGAGAAAGGAGAGAATCTTCAATGCATTAGCATACAAGGCTGTCCAAGGGCTGGCTGGTGCTACACCTCATGACTATGCCACTGAACGTGGTTACATCATATTCTTCAAGTCACAGGGCCTTGGCCAGAGCCTGCGAACACAGGCCAGGGTCCATAGGGGGCAATATTACAGAGGGCATCACAGACAGTCACTGTATTGGTCTGGACATGCTCTCGCCTAGCTCGGCTGCCCTCGCCAATGTTGTTACCTTAATAAACGCACAGTCTTTAAGAGCTGACCAGGGAGCAACCGAAAGCCCTGTTACATACCAGTTTGAAGGCAGCTTGAGGAATCTTCTACTCTTATGGCATGCATTAGGAATGTGAATGGTTTGCCAGATGAAGATCCTGGATGGCTTTAATGTGATTGTTGTTTTTTCTTTTTGTTCTTATTTTAGCAATTCAGATATTTGTATATGGGGGAATTGCATCGATAAAGTCCTACAATGGCTTAATGTCTGAGTGTCCAGCTATGCCAAGCTGTTACATATGAACTGAGATTGATAAGGCTACGAATTGCCTGTAACTTTTCTCCCATTGGCTATCATTTCCATGTTGTTTCTCTCCTATGATGCGTATCTGTGTTGcatgtcctgtctctctccctaacccCACATCTCTATTGGAAGTACATAGCTCTGCTCTGGGGATGATCTCCACCAAAAGAGACCTATATGTCATAGTCTGTGGTTTGTGTAAAGACATAAAAAAATGTGTCTAAATGGAGTTGAGTCTGATTCTCCTGAGCCCATTGCAACTCCACAGTCTGTCTGGAGGTCAGTGGGGTTTGTAATGTACCGCTGGCTCAGAGCCACGGAGACCAGGACACAGGCAGGATATCCAAAGTGACACTGCTTGACTTCAGGTGTCTTTTAGAAGGTCAACTTGACTGACTGTAGGGAGAGGATGTGGGATAAATGTACCGTCCTGTTTGTTGTCCTGTCTTTGTGTGGCAGGTGTGGAAAGTCTTTTGAAGTTTGTTACCAAGGTCTCTCAAATCAGAATGAGCATAGACTAGCACTCAATGTCAGGAGGTAACCCTAAGTCCTTTTATTTTTGATGACTTTGTTTATCCCATTTAAATGATGTGACTATATTGATATTATATGACTGATTCTGGCCCATTATGCCTTATCAGGTAGGTAGACCCTAGGCAGTGTGTCCTGGAGCTTAATTAAAGTCAAGCAGGACTCTTCACATATTAATGCCTTCATTCTTTCCTCCCAAAACTGGTCAATATTGAATGAGGAAAAATGACTCTTATCTATGTAGCCACATACAATGTCTACAAGAGAGCCTCTGAAATGGAAAAAAAAACTGATCCTCCCTTGATTCTAACTCTGTTTTTTCTGTTTGGTATTGGTGAGTATGGGTTTGTGCTGGATaataaaatattgtttctcattaCCTTTGGCATTTAGTAAGGCTCATCGGAGTGTGGTCGTCTTAAATTCATTCTTCTCATTGTCTTTTTATTCCTGTGGTAAGGTAATAGGTGGGTGTATAGGGGGTGGTGCCTGGGATTTACATTTCTGTCTTTAATTTGTCTTGCTACATTTTTTTTGAGAAACGCTTGCTCTGAAATGTAAACCGAGAGAATCCAGAATGGGAAAGTCTAATACTGCTGTCTGATTTGAATGTCTGCTGTGTTTTAAACAGTATCTTCGATTTTCTTTTCATGGTTCTGTTTCCCGTTCTACTCAAATTTAAACATTTTACTAAAATTGCAAAAAGTATTGTGcaaatgttgttttgtttttttaactaCTTGAAATGCTTTAATAAAAATAGACTTGATCAAAAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU608810 lncRNA upstream 24144 67981566 ~ 67982894 (+) True G537721
TU608808 lncRNA upstream 34259 67971325 ~ 67972779 (+) False G537720
TU608809 lncRNA upstream 34259 67971708 ~ 67972779 (+) True G537720
TU608781 lncRNA upstream 65522 67940555 ~ 67941516 (+) True G537699
TU608736 lncRNA upstream 105997 67899800 ~ 67901041 (+) True G537654
TU608836 lncRNA downstream 1087 68117493 ~ 68117835 (+) True G537744
TU608897 lncRNA downstream 3420 68119826 ~ 68130306 (+) True trnar-acg-5
TU608907 lncRNA downstream 21844 68138250 ~ 68138963 (+) True G537815
TU608914 lncRNA downstream 28475 68144881 ~ 68157426 (+) True G537819
TU608921 lncRNA downstream 38882 68155288 ~ 68191428 (+) True G537826
XM_021607377.2 mRNA upstream 33447 67959814 ~ 67973591 (+) True LOC110526412
XM_036980794.1 mRNA upstream 109259 67849274 ~ 67897779 (+) False LOC110526410
XM_036980795.1 mRNA upstream 109259 67849274 ~ 67897779 (+) True LOC110526410
XM_036980771.1 mRNA upstream 253641 67739974 ~ 67753397 (+) False LOC110526406
trnar-acg-5 mRNA downstream 3424 68119830 ~ 68119902 (+) False trnar-acg-5
XM_021607382.2 mRNA downstream 48643 68165049 ~ 68188551 (+) True aldh1a2
XM_021607385.2 mRNA downstream 292811 68409217 ~ 68433079 (+) False LOC110526420
XM_021607387.2 mRNA downstream 292811 68409217 ~ 68433079 (+) False LOC110526420
XM_021607388.2 mRNA downstream 292811 68409217 ~ 68433079 (+) False LOC110526420
TU608686 other upstream 239425 67766756 ~ 67767613 (+) True G537617
TU608672 other upstream 250420 67754556 ~ 67756618 (+) True G537606
TU608066 other upstream 896410 67109676 ~ 67110628 (+) True G537032
TU608056 other upstream 902130 67104411 ~ 67104908 (+) True G537029
TU608055 other upstream 902176 67104411 ~ 67104862 (+) False G537029
TU609823 other downstream 562971 68679377 ~ 68681652 (+) True LOC110526436
TU609862 other downstream 587992 68704398 ~ 68704696 (+) True G538561
TU609930 other downstream 694713 68811119 ~ 68811890 (+) True G538607
TU610240 other downstream 789639 68906045 ~ 68906847 (+) True G538859
TU610258 other downstream 879677 68996083 ~ 69002828 (+) True G538877

Expression Profile