RNA id: trnar-acg-5


Basic Information

Item Value
RNA id trnar-acg-5
length 73
RNA type mRNA
GC content 0.55
exon number 1
gene id trnar-acg-5
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68119826 ~ 68130306 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGcttgtggcgcaatggataacgcgtctgactacggatcagaagattctaggttcgactcctggcaagCTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU608836 lncRNA upstream 1995 68117493 ~ 68117835 (+) True G537744
TU608894 lncRNA upstream 10279 68108999 ~ 68109551 (+) True G537802
TU608810 lncRNA upstream 136936 67981566 ~ 67982894 (+) True G537721
TU608808 lncRNA upstream 147051 67971325 ~ 67972779 (+) False G537720
TU608809 lncRNA upstream 147051 67971708 ~ 67972779 (+) True G537720
TU608907 lncRNA downstream 18348 68138250 ~ 68138963 (+) True G537815
TU608914 lncRNA downstream 24979 68144881 ~ 68157426 (+) True G537819
TU608921 lncRNA downstream 35386 68155288 ~ 68191428 (+) True G537826
TU608948 lncRNA downstream 93248 68213150 ~ 68213458 (+) True G537851
TU608954 lncRNA downstream 99151 68219053 ~ 68219290 (+) True G537857
XM_021607380.2 mRNA upstream 3424 68007028 ~ 68116406 (+) False adam10a
XM_036980803.1 mRNA upstream 3424 68007038 ~ 68116406 (+) False adam10a
XM_036980804.1 mRNA upstream 3424 68007038 ~ 68116406 (+) True adam10a
LOC118965064 mRNA upstream 55838 68060636 ~ 68063992 (+) True LOC118965064
XM_021607377.2 mRNA upstream 146239 67959814 ~ 67973591 (+) True LOC110526412
XM_021607382.2 mRNA downstream 45147 68165049 ~ 68188551 (+) True aldh1a2
XM_021607385.2 mRNA downstream 289315 68409217 ~ 68433079 (+) False LOC110526420
XM_021607387.2 mRNA downstream 289315 68409217 ~ 68433079 (+) False LOC110526420
XM_021607388.2 mRNA downstream 289315 68409217 ~ 68433079 (+) False LOC110526420
XM_036980816.1 mRNA downstream 289315 68409217 ~ 68433079 (+) False LOC110526420
TU608686 other upstream 352217 67766756 ~ 67767613 (+) True G537617
TU608672 other upstream 363212 67754556 ~ 67756618 (+) True G537606
TU608066 other upstream 1009202 67109676 ~ 67110628 (+) True G537032
TU608056 other upstream 1014922 67104411 ~ 67104908 (+) True G537029
TU608055 other upstream 1014968 67104411 ~ 67104862 (+) False G537029
TU609823 other downstream 559475 68679377 ~ 68681652 (+) True LOC110526436
TU609862 other downstream 584496 68704398 ~ 68704696 (+) True G538561
TU609930 other downstream 691217 68811119 ~ 68811890 (+) True G538607
TU610240 other downstream 786143 68906045 ~ 68906847 (+) True G538859
TU610258 other downstream 876181 68996083 ~ 69002828 (+) True G538877