RNA id: XM_021607382.2


Basic Information

Item Value
RNA id XM_021607382.2
length 2584
RNA type mRNA
GC content 0.50
exon number 13
gene id aldh1a2
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68165049 ~ 68188551 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTGCGGCTGACACCTGGTTATAAACACAGGAAGGATTCCAAAGTCCTAATCAGAAATCAGTAGAAAAAAACGAAGACGCATCTGCAACAGACACACGGAGGCAGGCGCGATGACATCCAGTAAAATCGAACTCCCTGGTGAAGTGAAGACCGACGCCGATGCCGCTGCGCTCATGGCATCTCTCCAGCTGATGCCCTCGCCGGTGCCCAACGCGGATATCAAGTACACCAAGATTTTCATCAACAATGAGTGGCAAGACTCTGTGAGCGGAAAGACCTTCCCAGTCTACAACCCTGCCAGCGGAGAGCAGATCTGTGAGGTCCAAGAAGCAGAGAAGGCTGATGTGGACAAGGCGGTGCAGGCGGCCCGGCTGGCCTTCACCCTTGGTTCAGTGTGGCGGAGGATGGATGCGTCAGAAAGGGGTAGACTGCTGGCTAAACTGGCTGACCTGGTGGAGAGGGACAGTGCCTATCTAGCAACTATAGAGTCCATGGACAGTGGGAAGCCTTTCCTGCCCACCCTGTTTGTGGACCTCCAGGGAACCATAAAGACGCTCAGATACTATGCTGGATACGCAGACAAGATCCATGGAACGTCCATTCCAATGGATGGAGACTATCTTACGTTCACTAGACACGAGCCCATGGGAGTGTGTGGACAGATCATCCCTTGGAACTTCCCACTGATGATGACTGCGTGGAAGCTAGGTCCAGCGCTAGCCTGTGGGAACACGGTGGTCCTGAAGCCTGCTGAGCAGACCCCCCTCACCTGCCTGTACATCGGATCACTGGTCAAAGAGGCCGGGTTTCCACCGGGAGTCGTCAATATTTTGCCAGGATTCGGGCCAACGGCAGGAGCTGCGATAGCTTCGCACATGGGCATAGACAAAGTGGCTTTCACAGGATCAACTGAGGTCGGCAAGCTGATCCAAGAAGCAGCTGGGAAGAGTAATTTGAAGAGAGTAACGCTGGAGCTAGGAGGAAAGAATCCCAACATTATTTTTGCAGACGCTGATTtgGATCTAGCTGTGGAGCAAGCCCACCAGGGAGTGTTCTTCAATGCAGGCCAGTGCTGCACTGCAGGCTCTCGTATCTTCGTGGAAGAGCCCATCTATGAGGAGTTTGTGCGCAGGAGTGTGGAGAGGGCCAAGAGGAGGACAGTAGGAAGCCCCTTCGATCCAACCACAGAGCAGGGTCCACAGATCAGCCAGGAGCAGCAGAGCCGCGTGCTGGAGTTTATTCAAAGTGGCATCAGTGAGGGAGCCAGGCTGGAATGTGGAGGCAAAGCCCTGGGCCTGAAAGGATTCTTCATCGAGCCCACTGTCTTCTCCAATGTCAAAGATGACATGCGCATCGCAAAAGAGGAGATCTTTGGACCAGTTCAGCAGATCATGAAGTTCAAGACTATTGATGAGGTGATTGAAAGGGCCAACAACACAGAGTACGGCCTGGTGGCAGCTGTGTTCACCAGCGATATCACCAAAGCCATGACCATCTCCACAGCCATGCAGGCTGGCACCGTCTGGATAAACTGTTTCAATGCCCTGAGCACGCAGTGTCCATTTGGAGGATATAAAATGTCTGGCAACGGGCGTGAATTGGGGGATTGTGGCCTGAAGGAATACTCAGAGGTGAAGACCATCACCATAAAGATCTCAGCCAAGAACTCCTAAGGCGGCCGGCCACACTAcatgtagtggaggaggacttcCTCTGAGGCGCACCACTGACcctctgggtgtctgtctgtggtggtaaaacACACGGATCATCCCAACTAGCCATGACCATGGGCAACTAACTCTATTGGCTGTGAAAACTCCctgcccactcctctccctcacctcccaTGGGCAGTCCTCACATCAACATCAGCTGTCTCCATCAGCCCGGTGTCCACCGGCGGTCTCAAGTTCACACCAAACCTATACTCCACCTACTGCCATCACCCACCTCCTCCACTAACCACACTAAAGCACTCGGAGAGACGATGGGAGAGGCTACTCTGTTCACGTCCCCCCCAAAACCCCCTAACCCACAGGAGTTGGACACTCACAGACTTAAGCACCGCACCATCCCTGCTTTGCCCCATGTCAGCTAATCATTGTAGCGTGTTGGGAGGCAGTGTGGTCGTGTTGTGGGGTATCATTGTCAAACCTCACACTGTATGTTATTATGTGTCATTGCTTTGATTTGCCAGGTAACATTCATGGAAGCATATCAGCTCATTCTAAGACCACTGAAGCGCTCAACCTCAGAAATGAATGGATGTCCATTGAAACTGTTAATTAGAATTTTTAATTGTTGATATCTAAttgttcatgttgttgtttgaaATTTTACCACTTAACACTGTATGTCCACGTATGACCAATGTAAACGTGAAAACAAAAATGGTTAACCTCTTAAAAGCATTTTAGTCATACCTGCTAAGACGAGGAGTAATGTATTTTAATCATAATGTAAGTTTCTTATCGATGTCCATCTATGTTCATGTTTATACAATTATGTACTATGAAATTATAAGATATAAAAATGGACCATAGCTTTTTTtagtaaaaaaaagttttttttctctcaaaa

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K07249 ALDH1A; retinal dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU608914 lncRNA upstream 7623 68144881 ~ 68157426 (+) True G537819
TU608907 lncRNA upstream 26086 68138250 ~ 68138963 (+) True G537815
TU608897 lncRNA upstream 34743 68119826 ~ 68130306 (+) True trnar-acg-5
TU608836 lncRNA upstream 47214 68117493 ~ 68117835 (+) True G537744
TU608894 lncRNA upstream 55498 68108999 ~ 68109551 (+) True G537802
TU608948 lncRNA downstream 24599 68213150 ~ 68213458 (+) True G537851
TU608954 lncRNA downstream 30502 68219053 ~ 68219290 (+) True G537857
TU608977 lncRNA downstream 49083 68237634 ~ 68238106 (+) True G537877
TU609137 lncRNA downstream 256973 68445524 ~ 68448895 (+) True G538001
TU609162 lncRNA downstream 299131 68487682 ~ 68526289 (+) True G538021
trnar-acg-5 mRNA upstream 45147 68119830 ~ 68119902 (+) False trnar-acg-5
XM_021607380.2 mRNA upstream 48643 68007028 ~ 68116406 (+) False adam10a
XM_036980803.1 mRNA upstream 48643 68007038 ~ 68116406 (+) False adam10a
XM_036980804.1 mRNA upstream 48643 68007038 ~ 68116406 (+) True adam10a
LOC118965064 mRNA upstream 101057 68060636 ~ 68063992 (+) True LOC118965064
XM_021607385.2 mRNA downstream 220666 68409217 ~ 68433079 (+) False LOC110526420
XM_021607387.2 mRNA downstream 220666 68409217 ~ 68433079 (+) False LOC110526420
XM_021607388.2 mRNA downstream 220666 68409217 ~ 68433079 (+) False LOC110526420
XM_036980816.1 mRNA downstream 220666 68409217 ~ 68433079 (+) False LOC110526420
XM_036980815.1 mRNA downstream 221220 68409771 ~ 68433079 (+) False LOC110526420
TU608686 other upstream 397436 67766756 ~ 67767613 (+) True G537617
TU608672 other upstream 408431 67754556 ~ 67756618 (+) True G537606
TU608066 other upstream 1054421 67109676 ~ 67110628 (+) True G537032
TU608056 other upstream 1060141 67104411 ~ 67104908 (+) True G537029
TU608055 other upstream 1060187 67104411 ~ 67104862 (+) False G537029
TU609823 other downstream 490826 68679377 ~ 68681652 (+) True LOC110526436
TU609862 other downstream 515847 68704398 ~ 68704696 (+) True G538561
TU609930 other downstream 622568 68811119 ~ 68811890 (+) True G538607
TU610240 other downstream 717494 68906045 ~ 68906847 (+) True G538859
TU610258 other downstream 807532 68996083 ~ 69002828 (+) True G538877

Expression Profile