RNA id: XM_036980815.1


Basic Information

Item Value
RNA id XM_036980815.1
length 4244
RNA type mRNA
GC content 0.48
exon number 29
gene id LOC110526420
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68409217 ~ 68433079 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGACGTTTTGGTAGATAACCTTCGCAATGTCCGAGCTTTTTATGGAATGTGAGGAAGAGGAGCTGGAGCCATGGCAGAGACAGACACCCGAAGTTAATTTGTTGGGCGACGGTAAACATGATGACGACGACGATGAACCTATATTTGTTGGGGAGCTTAGTACTTCAAAGGGCACCATTATTAACACCAGACCAACAAACAACCAAAGAAATGTGAAGACCACCCCAGTTCAAAGTGGTGGAGTTGGAAGACCAAGAGCCCCTAGGATGATAATGACACACAACTCCCCCCAAGCTCATCTCACTCGGGGTCCAGTTCCTCACAACATCATAATTCCTGGGAAAGGGTTGAACAATGCATCTCGACCCTTAACAGCAGTGCCACCACAGCCCATCATTATCAACAACCAGGGTTACATTATGACCACACCACAGTTATCGGCCAACTCAGCTTTCCTTGCTTCCCTTGGGAAGCAGTATCCCCCTGGGACATCTTTCACTGTGGTTCCagCAGGCCAGCAGCACATTCTGCAGCAGATGACTCCAGCAGCAGGCCAGCAGCACATTCTGCAGCAGGTGACTCCAGGGAAGCTTTTACCTGGGGTTATCCACAGGCCTCAAGTGCACATGATCCACAACAACGTAGTGACCTTGTCCAATGTGCAGGGCCCCGCTGCATTGTCTTCCCAGCCCAACCGCTCAAATTCTACCAACCTCCAGATTGTGTCCCCAGTTATTCAAGCCAAAGGCAACAGCTGGGACTATGGCAAACGAGGTTTACCTCAAGACCAAAACAGCACAGCTAAAAAAGCAAAGCAGGGCATAGGGTCTCCCCACACCCAGGAGATATTAGAAAATGGTGCACGTTTTTGTAAAAAATGTCCAAAGTGTAAATTTGATTTCTACCAACAAGCTGTCATGAAAGACCACATGGTGAAATGTTGTCCTCACCTGTTGGAGTGTGTCTTCCCCTCAACCCCAAAGTCTACTTACCTTTTTGCAAGCAAGCGCATCATGCTTGTCACAGACTTCTACTATGGTAGATTTGAGGGAGACAAACCAAAATCGCAGCAGCATAAGACCCCATTTACCTATAAGTGCCAGAGCTGTTTGAAAGTACTCAAGAACAACGTCAGGTTCATGAACCACATGAAGCACCATCTGGAGCTGGAGAAGCAGAACAGTGAGAGCTGGGAAAGCCACACTACCTGCCAACACTGCTACCGGCAGTACTCAACCCCATTCCAGCTGCAGTGCCACGTTGAGAGTGCCCACAGCATGGTCGAATCTTCAACCAATTGCAAGATATGTGAATTAGCCTTCGAGTCTGAGCAAGTGCTCCTGGAACACATGAAGGACAACCACAAGCCTGGCGAGATGCCCTATGTCTGCCAGGTGTGCAACTACCGGTCTTCATTCTTTACCGATGTGGACACACACTTCCGTACGGTGCATGAAAACACAAAGGATCTCCTTTGTCCGTTCTGCCTTAAAGTTCTTAAAAGTGGTCATGTCTACATGCAGCACTATATGAAGCATCAGAAAAAAGGAATTAATCGTTGCGGGAAATGCAGGCTGAATTTCCTCACCTACAAGGAGAGAGTGGATCACAAGACTCAGCACCATAAGACTTTCCAAAAACCCAAAGCTCTGGAGGGCCTTCCTCCTGGAACCAAGGTGACTATCCGGGCCTCTCTGACCGGGCCATCTCCCAGTTCCACCCATGCTGCTGAAAAATCCAGTGTCAGTGTCATACCAGAGGTCTCAGGCATGAAGGTAGCCAAAGTAAAAGCTCAGAGTAGTTCATCTACCACACAGGGCAGCAGTGGGGGTAAAGGCAAGGCCACAGTGAGCAAGAAGCTCCTTAAGCAGCAGAAGAACAACCATGTGTTGCAGAGTCTCAGTATTGGCGAAAGAAGACACACCTGCATTGAGTGCTACTCTGAGATTTATGACTTCTATAGTCACTATCCCATGGTTGCAATTTGTGGTGCATGCAAGTATCGGACAAGTTGCAAAACTTCATTTGGAAACCATATGATAAGGTTCCATAGTGCAATCTCAAAAGAGAGATTCCGGAAAATGAGGAAAATCCCAGTTGTCCTAAGGAATTTAACCCttgtctgtctgaactgtgaCTTCCTGGCGGATGCGCATGGAACTGACCTCATGAGCAAGCATTTGATTGACAGACCACACCACGTCTGTAAGGTCATTCTAGAGAAAGGAGAAGGTTGTACTGTAGATGACGGCATTAGAGGAAATAAGCAAGGGATGTCTGCTCTGATGTTCCCTGATATCCAGAACGCTGAAACTGCCACAGTGAGTGGCGCTTTTGAACAATTGCACAGCATTCCCAGATTGGAGGAGACCTCCAATGTCTTGTGTATCACCCCAGCTGCTGAAAGAGGGGATGGGCCAGAGGCTTCAATGAGCCAGTGGCGCAACATGAAGCACAGTCAGCAGCAGAGGGTGATCTCGGAATTTCGACGGCAGGAGGAGCAACGAGAAGACCAGACAAAACGCATCACTAAGGACAGACAAATGCAAGCCAATCTAATGAGTGAGGAGAGACTTGAAAAGAAGCGATACCTACGCAAGGTGCAAGACGAGCTGCACGAAAGCCAAATTGAGGATGCTCTCATCAAGGCAGAGGAGGTGAGAATATACAAGGAAAAGCAACTGCAACAAGAGGAGAGAATGGCACAAGAACTGGCCCGCATCAGCTATGAAAAGCTTAGAGATGAAAAAATGAGGCAATATATAAAAGAGAACAGTGTTGAACTCCGTGAGTTGGAGGGGCAGCTCAAGTCTGCATACCTAAACCGGGAGAGGGCCGCACAGATTGCTGAAAAGGAGTCTATGAGATATGAGACAGTGCGTCAGGAGGCTGATATTGCTCGTAAGATGAAGAGCGAGCATGAGCGGGCCTCTATGGAGCAGGAGAAGCAAGAACATAAGCGCTACGAGGAGGTGGTGCAGTACCAGCAGGAGCTGGAACAGCAGCTGGAGGAGAAAGAGCACAAGAGACAGGAGGCTTATGAGGAGTTCCTCAAGGAGAAACTCATGGTTGACGAAATCGTCAGGAAGATCTATGAGGAGGATCAAATGGAGAGGCAGTTAAGACTGGAAAAGATAACAGCCACTCAAAGGTACATAGAGGAGTTCAAGAGCCAGCAGACTGAGTGGAGACTGATGGAGCGGGAGAAGATGGAGGCTGAGAACAGACGCATCCTGGAATTTGCCAGTTACCAGCAGCATAAGGAAAAGAGCAGAATGGAGAAAGTCAGAGAACGAGAGCAGGCAAAAGAACATCTTCACCAGATGCTCACTGAGAAGATTGAAATGGAGAGGCAGCAGCGTGACGAGATGGAGCGTGTTCGTGAAGAGCTTTGTCTGGAGGAGCAAGCCGAGGCTGCAAGGCAGAAACAaatcGAAGATATGGAGAAGAGAATCAGACAGAGGCTGGAGTTGCAGCAGACCTGCCAAGAGCAAATAGCCTTCAAGGAAATGCGGAGGCAGGctgagaaggtggaggaggaggccttCAGGCAGATGATGATGGCCAAGTTTGCTGAGGACGACCGCATAGAGCAGATGAATGCCCAGAAACGTCGCATGAAGCAGCTTGAGCACAAGAGGGCTGTGGAGAAACTGCTGGAGGACAGGAGACAGCAGTACCTGGCTGacaagGAACGTGAGGCTGAAGAAAGAGCAATGGAACAGGAGAGGGAGACACTGCGTCGACAGATAATTGAGGAGGAAAGGCAAAGCCTTCTCAAACTCCATGCCACAAAACTTCTGGGCTATCTACCTAAGGGCATATTCCGGGAAGATGACCTTGAACACTTTGATGAGGACTTCagaagcaatttccaaaagcgACAGGCTGACATCTTTGATGAAGAGGGCTGGGGAGATGATGAATAACCACTTTCTATACTACACCACTAGATGGCATTATTGGGTAGATGCTGTCtagtgtgttttttgtgtgtatcAAATGGTGGATTTCTTATGGCGATGGtgtactctaaaatgtattaagttGCAAAGACTCATTTGTATCCCACTAGCTGCATATCACCACACCTTAAATCCTATCATGGAGGTGCAGCAATTTTCAGTTGAAGTCACTTGGTAATCAACAAAAACTACACCATTTCCTTTATTAGGTGATAATGCAACTACAGTTTAAAATGATTTAACCCATTATTGTAATAAAATGCTAAACTTTTAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU608977 lncRNA upstream 171665 68237634 ~ 68238106 (+) True G537877
TU608954 lncRNA upstream 190481 68219053 ~ 68219290 (+) True G537857
TU608948 lncRNA upstream 196313 68213150 ~ 68213458 (+) True G537851
TU608921 lncRNA upstream 218343 68155288 ~ 68191428 (+) True G537826
TU608914 lncRNA upstream 252345 68144881 ~ 68157426 (+) True G537819
TU609137 lncRNA downstream 12445 68445524 ~ 68448895 (+) True G538001
TU609162 lncRNA downstream 54603 68487682 ~ 68526289 (+) True G538021
TU609152 lncRNA downstream 84675 68517754 ~ 68525267 (+) True G538011
TU609149 lncRNA downstream 114077 68547156 ~ 68547476 (+) True G538008
TU609151 lncRNA downstream 116053 68549132 ~ 68549490 (+) True G538010
XM_021607382.2 mRNA upstream 221220 68165049 ~ 68188551 (+) True aldh1a2
trnar-acg-5 mRNA upstream 289869 68119830 ~ 68119902 (+) False trnar-acg-5
XM_036980803.1 mRNA upstream 293365 68007038 ~ 68116406 (+) False adam10a
XM_036980818.1 mRNA downstream 8255 68441334 ~ 68484719 (+) False LOC110526423
XM_021607392.2 mRNA downstream 8258 68441337 ~ 68484719 (+) False LOC110526423
XM_021607393.2 mRNA downstream 8258 68441337 ~ 68484719 (+) False LOC110526423
XM_021607390.2 mRNA downstream 8259 68441338 ~ 68484719 (+) False LOC110526423
XM_021607391.2 mRNA downstream 8259 68441338 ~ 68484719 (+) True LOC110526423
TU608686 other upstream 642158 67766756 ~ 67767613 (+) True G537617
TU608672 other upstream 653153 67754556 ~ 67756618 (+) True G537606
TU608066 other upstream 1299143 67109676 ~ 67110628 (+) True G537032
TU608056 other upstream 1304863 67104411 ~ 67104908 (+) True G537029
TU608055 other upstream 1304909 67104411 ~ 67104862 (+) False G537029
TU609823 other downstream 246298 68679377 ~ 68681652 (+) True LOC110526436
TU609862 other downstream 271319 68704398 ~ 68704696 (+) True G538561
TU609930 other downstream 378040 68811119 ~ 68811890 (+) True G538607
TU610240 other downstream 472966 68906045 ~ 68906847 (+) True G538859
TU610258 other downstream 563004 68996083 ~ 69002828 (+) True G538877

Expression Profile