RNA id: XR_005052222.1


Basic Information

Item Value
RNA id XR_005052222.1
length 3874
RNA type mRNA
GC content 0.38
exon number 7
gene id LOC110526422
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68432656 ~ 68439524 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGTCGCACAGCCGAGAAAAACATTTGACCACGACTTGTTGCTATGCAACCGCAAAGCCACCCGCCAGATTCAGCACCACAAAATGTCTGTAAGAAGAATGCATGCGCCCGAAAGACTCATGTCATCCAAGGCAGAAAGGTCTCAAGGAGGAAGATCTGTGAGACGTCCAGCCTCTGTCCCCTCAAAGAAACCATCCACGATAGACCTACTTGCTAAAGAGGAGGAATACAAAGCTGGAGGCAAAAACAGCCGAACTAGTAAGACAAGCGGAACAGGTTATGTGACCAAAATTAAGTATTGTCAAAGTCAATCTCTTTCCACCTTGATGTTGAcattgaggatgaggaggaggatttCAGGAATGTGAACATGCTGGAATCTTCAGTTATGAAGCCCACTTCTAAGGTGCAGTATTCAATTCAGTTTGATACGTAAAATGTAACATCTCAGAGACACAAAGGTAATGTAATCAGTTAGTAAAACTGGGGGAGAATTTCAATTGTATTTCCTTGATTCCGCACGTCCTCTTCAAACCCCATTTCAAACCCCATTGGATGGGAAGGTCAGAGGGGCGGGACTTCTGACTTTCTCATTCAATGGGTTTTGAGGAGGCGAGGAATTAAGGAAATCCAATTGAAATTCTCCCTAAGTCATATTTCCATTGCTCAGGTAATGACAAAGAAAAGGGTCACATCAAAATCCAATTCACAAAACAGACCTGGATACCAGAGAAAAAGACAGTAAGAATGTTATCCTTGTCACAAATGTTTTCACAAATATCTATTGGAAACATTGGAAGATTGTGAAAGGTAATGGCTTAATGAGTGTCCAGCGTTGTTGATATTCAGTTCCTTATGTTTGTTATGACTTTTTCAACTTTTTGTTTGAGTTGTATTTTgtttatttgttactttatttcAAAACAACAAAGACATCTGCAGTTGATGATGTTGCGGTTCTTAAAGATTGTGTGGATTTTTCCTTGGCTAAAACAATATGTAGACATTGAGGGGAAGCTGGATGATGGAGATACTCATGTCAATCTTATGGAAGACATCATGCGCTGTGTTGGTGATGAGATGGGATCAGGTGAATTCTGATTTAATTTTTACACTTTCTGTGGCTTTCTCACAAATTTACAATATCACATCTGGAGCACAAGAATGGTTCTTTTCAAAAACATTCATTACAAAAAAAACAAGTTATTTATCAGAGTTCCAGAATATCAATTGTTTCAGCCTTAGTTCATTGAGCTTCTCGCATATCCTAAAAATGATATAATTCTTTATGTAACTATAGTATACTTtttttggtgtgttgtgtttcagaTCCGTTTTCTCAAAGCAAAACTTTGTGTAAAGCAAGAAGAATTTAACCGGCTGTCAATAGAGTGCAACATAAAAGTAATGATAGAAATATGAGAGATGGAAATTAGTTATATTTTTGAGTAAAATGTAACATTGAAACAagaataaaacatgtatttattctaGGATTATGCAAACAGTAGTTTAAGCACCAACATAAAGGAGGTCGAGGAGGCTCGAGCAGGACTACAGAAGACCACAACTTTCAGCAAACCCAGATAGAGAAACACAGAGCTTTAGCGGAGGAGTCAAACAGAAAAGGTGATGGGCTCCAGCAACAAGTAACTGCTCTACAGAAGgttggtcgtagatggaaggccggGTTGCCCAGCAGGGATCTCTTGTCctctgaagaatgtctctggtggtaagctggatacgttgtagtatcgTTGTGTGTGTTAGATTGAATACGTTGTtcgtcctttcctagcccacgtttacagcgtctgctgctaactcaacggctaggaggtatcacttctggagtgaataagagttcaaagttcataccaagccATACTTTTAAGCTcgtgctatattctggctggtatagttgAAATTCATCCTTTCGGTGTGTCGATCGTCACCTTCACATTGAACACGATGCTAATTTCGTTAGGTTATTATCTGAGCCATTTTAACCTaagaccgtcgtcctcacgtcctcggaacagcaAGTAGAATTTTTGTCAACAGGTTTATATAGTGGTGAAAGAAGGGCGTGTTTCTTAGTTTACAACCAAAGTCTGTTCACTTGGGTGAGTGAGCAGAGTTTCTCTATGACAAACCGTTCTCTCATttaagaagctaaaattacatttaatcttttcacaaatagtttcatatttaaacatttaaattgcacaacaattccatgtgaatctgataactacaATGTATCGACTTTCCAAGATAGTTTATGTCATCCTGTCATTAGTAGTAATAGCTcagacaacaactgatctgagatcatattcattaagtaccaacgcatgttttcaactggttggattaccgaaatatggttccgtttCCCACCTTTCAATGTTACCAGACTCTATGTTACAAATTCTTTACAAGAGTCAACTCTATAAAGTAGAGAAAAAGGTTTTATGGGGGTCATAAAACTCCCccaacaggccaacgtcatgacaccacactactgaacagtagtctaggtgcgacgaaactaggacctgttggaccttccttgttgatagtgttgttaagaaggcagagcaacgctttattatggacagacttctccccatcttagctactgttgtatcaatatgttgaccatgacagtttacaatccagggttactccaagcagtttagtcacctcaatctgctcaatttccacattattcattacgagacgtagttgaggtttagtgaatgatttgtcccaaatacaatgcttttagttttggaaatatttaggtctatcttattccttgctacccattctgaaactaactgcagctctttaagtgttgcagtcatttcaatcACTTTAGTAGCTGACGAGTATTGTGTTGagccttactcaaagccagtgacatgttgttagtaaagattgaacaAAAGCATGGAACCTGGTCAGTTtgacatggaaagagcaggtgttcctaatgttttgtacacttagtgtatgtCCACTCCCAAAGAAAAGAAGAATGAATGGTTGATGGCTTCCTATTGCTTAGTCACAACAATTATCTGTTTAATTTATAACTATTCACATTTCATTTCTGAAATATAACGTTAATAAGTACATGTGATGACAGTCAGTTTTTGTAGCTATCTAACCAAATATTACCATTATCATTACAGTGCTTTTGAAAATGTGTGTTGGTGCGCTATAAAAACGTTACACAAAATGCTTTTACTGATTTAGCTTGCTCCCGTGCGTGTTTAACAAAGGAAATTGGGGGTTTGAAGAGAGCACAAAAACAGGCAGCAACCAATCACAGTGCCATAAAGGTAAGACTGAACAGAGGAAGTTGGAGGAAGTTGAGAGGTCTAAGACACAACTGACCAAGCTCAAGCAGACGAGCAAGAAATTAAACCACCTATCAGTGCATTTAGTGATCACATCAATCATTTACACTAAATTGTATTGATAGATAGTGCTATGCTATTAGTATAGTTTAGATTTTGGTATTCAAGTTTGGCTTCTGTCACTTGTTGTATAACCCAGGTTAAATAAACTTGTTTTATGTCTATCCTTTCCAAAAGGACACAGCAGACCAGGAGCataaaaaaaatagaaacatTAAAAGCCAAAAACAAGAAGCTGGAAAAGCAAAAAGCTGAACTGATAGTGGGTTGTAAAAAGCAGCTCAAACTGATTGATACACTGAAAAGGCAAAAAATGCATTTAGAAGCTGCCAAGATGTTGTCATTTACAGAAGAGGGATTCATGAAAGCTCTTGACTGGGGGAAATCATAAAGCAATactgaaaaatgtatgtaatcctGCTTGCCTTGAATGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU609626 lncRNA downstream 12578 68418811 ~ 68420567 (-) True G538371
TU609669 lncRNA downstream 17732 68413802 ~ 68415413 (-) True G538412
TU609600 lncRNA downstream 33218 68383353 ~ 68399927 (-) True LOC110526419
TU609437 lncRNA downstream 195239 68237623 ~ 68237906 (-) True G538265
TU609580 lncRNA downstream 203296 68229537 ~ 68229849 (-) True G538330
TU609704 lncRNA upstream 25047 68464571 ~ 68465000 (-) True G538440
TU609720 lncRNA upstream 56706 68496230 ~ 68501439 (-) True G538451
TU609727 lncRNA upstream 65683 68505207 ~ 68507545 (-) True G538457
TU609729 lncRNA upstream 106069 68545593 ~ 68545875 (-) True G538459
TU609993 lncRNA upstream 171965 68611489 ~ 68611707 (-) True G538665
XM_036980810.1 mRNA downstream 33171 68298165 ~ 68399974 (-) False LOC110526419
XM_036980809.1 mRNA downstream 33185 68298165 ~ 68399960 (-) False LOC110526419
XM_036980812.1 mRNA downstream 33186 68298165 ~ 68399959 (-) False LOC110526419
XM_036980811.1 mRNA downstream 33189 68298165 ~ 68399956 (-) False LOC110526419
XM_036980813.1 mRNA downstream 110051 68298165 ~ 68323094 (-) False LOC110526419
XR_002473954.2 mRNA upstream 156607 68596131 ~ 68609175 (-) True LOC110526433
XM_021607411.2 mRNA upstream 183910 68623434 ~ 68627219 (-) False pigb
XM_036980826.1 mRNA upstream 183910 68623434 ~ 68627219 (-) False pigb
XM_036980827.1 mRNA upstream 183910 68623434 ~ 68627301 (-) False pigb
XM_021607410.2 mRNA upstream 183910 68623434 ~ 68627383 (-) False pigb
TU609527 other downstream 288238 68142251 ~ 68144907 (-) True G538277
TU607613 other downstream 1883171 66549367 ~ 66549974 (-) True G536630
TU607649 other downstream 1928120 66500388 ~ 66505025 (-) True LOC110526387
TU607202 other downstream 2151526 66277202 ~ 66281619 (-) False LOC110526379
TU607101 other downstream 2156856 66262486 ~ 66276289 (-) True G536183
TU609730 other upstream 70791 68510315 ~ 68516681 (-) True G538460
TU610131 other upstream 367889 68807413 ~ 68811230 (-) True LOC110526447
TU610756 other upstream 509996 68949520 ~ 68953664 (-) True LOC110526455
TU610759 other upstream 563219 69002743 ~ 69005665 (-) True G539306
TU610933 other upstream 833594 69273118 ~ 69287090 (-) False LOC110526462

Expression Profile