RNA id: XM_021607393.2


Basic Information

Item Value
RNA id XM_021607393.2
length 9112
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC110526423
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68441334 ~ 68484719 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGAAAAGCAAGCATTAAGCCGTGCTACACCGTCCCCATCCAAACCTACACATATGTGGTTAGTAGagacaaaaaaaatgttaaaagtaaatatattttgatttagtTATCCACATTGCAATATTTTGAAAtgcaggcttttatttagaaggGTTCAATGTGACGTCATCGTTCGTCCTGCTGGCAGAATACTAGTCAGCATCACAAACACTTCCACCACTAGTGTTTGCAAACGCACGGGTCGCTACAAGGCTGCGACGGAATCTTGGGGAAAGCCTGCATTTTGTATTCCTCTGtacttgtgatttttttttaaaaaacatgtCTGTGCATGGTGTTCGAAATTAACCGTCTAACAATGTTTTCCCGGCACCGTTTCTACCCTGGAACTGAGGCCACGTATATCGCAAATGAGAACGGGTGGGTCGGTAATGTACAGTAGGAAAATAACTGCTATCTCGAGGTCCAAGTTGAGGCCTGCATGTTAAAGATCCCTTTCCTCCCATCCTGAATCTCATCGTGATGACTGAGGATCAACAACAACATGATCAGCTCCCGAAGCTGGGCTCTGGAATAAGCACCTTACCATCCCTAGTTCCTGGACTGCAAGGGACTGAGGCCAATGCGTTGCAGCTCAAAATAAAGAATTCCATCTGTAAATCTGTACAGTCAAAGGTGGACAATATTTTGAAAGATGTGGAGACGTTTACAGACATCGAGAAACTCTACCTCTACCTTAAGTTGCCTTCTGGTCCCAGCAACAGTGAAAAAAGTGATCAGAGCTCCATGTCATCAAGCCGCACTCAGCAGATGCACGCGTTCAACTGGATCCGCAATCACCTAGAGGAACACCCAGAAACCTCTCTGCCAAAACAGGAGGTCTATGACGAGTACAAgAGCTATTGTGACAATCTCTGCTACCACCCATTGAGTGCGGCGGACTTTGGAAAGATCATGAAAAATGTATTTCCAAACATGAAGGCACGTCGACTTGGCATGAGAGGCAAATCAAAATACTGCTATAGTGGACTGAGGAAGAAAGCCTTTGTCCACATGCCATCTTTACCGAACCTGGAGTTACATAAAACAGGGGACGGGTGTGAGGTGCTGGAGGCCTCAGGTCAGCTGTGCAGTGCGGAGGAAGAGGTGCGCTCTGCGGCCTGTGGCCTGGTGTGTGAGTGGGCCCAGAAGGTGCTGAGTCGCCAGTTTGATGCTGTGGAGGACCTGGCTCGCTTCCTCCTCAACAGCCACTACATCGGCACCAAATCTGTGGCAGCCCTCACGGTCATGACTGGTACACCAACAGGAGTTAAAACGCCACTCCCATCCTCAGCATTTGCACCCACAGCTGAAGCCCACTCCTTCCAGTCCCAAGTGAAGACcctgccctctccctccatcGATGCCAAGCAGCAGCTCCAGCGGAAGATCCAGAAGAAGCAGCAGGAGCAGATGCTGCACTCCCCCCTCCCCGGAGAGGCTCAGGCCAGGCGGGCTGACGGGGGCACGCCTGGGGTCGGCTCCATTACCTGTAGAAGCCCAGCCCTGCTCtccccacatcccaccattgGCATTATGGTAGCTGCAGTCCCCAGCCCCATCACGGTACAAAGGAGCAGGCAGCTGATGTCCCCCAGTCCTGTGGGAACTTCGGAGGGCAAGATTCTGCCTGTCAACTTCCAAGTGGTGACCCAGTCAATGCAGCCAGTCAAGTGTCCCAAGACCCCTCAGAATATCCCAGCCAGCCCTGTGGGGGACCGCTCTGCCCGGCACCGGTATGCCCAGATCCTGCCTAAACCCTCAGCCACCAGCGCCATCACCCTGCGCTCGCCCCCCACCCTGCTCATCACCAACAGCCCCATCAAGACCGTGATGCAGCCCACACCCCACATCAGCTCTGTCAACGTGGTCAAGATGACTACCATATCCCTGGCTCCCAACTGCAGTACTACAACCACCCTAACCAACACCACCTTAAGGCCTGCCTCTGCTGGCATGGGCAGCACTGTAGCCCTGGAGGAGAGCAGACCCAGCCCACGGGCCAGGAGTGGCTCTGCGGCGCCCATCCTGTCCCCCTTAGCCAGGTCAGGCCGggccaccaccacccctaccatCGACATCAAGATGATGGAGGGTGAAGCCATAAGTGAGGGCAGTCCGGCCCTGGGTGCTAGCAGGCTTACTATGGCTCAGGAAGCTGCAGGGGGGCAGAGGGCTGGAGGAGCTGTACCAAGGGCTGCCAGTGTGCCCACGCCTCACACTAAAGGCTCCCTGGGACTGGAGGCAATGGCTGGAACCAAATGCAACGTAAAGTCCTCTTTGAGCAACAACCCTGTGGCAGCTACAGCTGGTAGCAATAATAACACCAATAACGAAAGCACTTTGTATTTGACGGTCTCCAATCAGAATACCAGCACCACTCTGTCACCCAATGGCGGCACTGTTGCCACATCACTCATCGCCTCCAAGAGCCCCAGGAAGCGCCCAGGCATCGGCCCAGAGTTTTATCCCACGCCTGTCAAAAGGGTCTTCATCTCCCAGCAGCCTCTTGGGGGTTCCGATGGTTACAGACATGGGATTGGTGCAGGAGTGAAGAAACTCCCCAGGGCAGGAACCCCGGTCAGACCTGAAAGTGCACCAGCCATCGGTAAAGTTACTGTGAAACTGAACTCCACTGTCCCAACTCGAATCCTGTCACTCTCTGATTCCCCTATCGGAACCAGAGGCTTCCAGACTGTTGTCAAGCCACAGAACTCCGTGCAGAGAAGAGACACTCCGACCACCATGGACACTAGTAGCATCGGCAACGTTAGTGCCCCGGCTGGTCATGCACGAATTCAGCACCAGCAGCACATGACGGGTAACATGCAATCCATGCCCAACAGCTCTGCCCTACTGGAGCAGTCTGCTGTGAGTGACCTAAGCAACACCATGTGGGTCGGGGGCCAGCTGGAGGGAGGTAAACAACCGCAGCAGCAGGCCTACGCCCAGCAGATCACAGACCACAAGCAGGCATCCACACCGGTCATGGAGCCCCTGGCCATGATGGGCCAGGCCCCAGACTCTAGCCAGCTCTCCATGCAGACAGACATGGACTACTTCCATTTCAATGATGACGATATGACCCAGGACAGCATTGTGGAGGAGCTGGTGCAGATGGAGGAGCAGATGAAGCTCAACAGCAGTCTGCAGGCCTTCGGAGCTGATGTGACGGTGCAAGGCCATCAGTCTGTAATACAGGGCAACATAATGTCCTCCAACCAGACAGTGACCCCTTACTACCAATCAGTACACAGCagcaccacccctgtccacacccccaccccaactccCACACCCACCTCTGAGATGATGGGAGGAGGCCAGGGCTTGACCAGGGAGAGTCCCTGCTCCCGCATGGCCCCTACCACCCCGGTGGACAGTGCCCTGGGGAGCAGCCGACACACCCCCATCGGCACTCCACACTCCAACTGCAGCGGCAGCGTGCCCCCCAGCCCTGTGGAGTGCAGGAACCCCTTTGCCTTCACTCCCATTAACTCCAGCATTACAGGCTACCACGACGGCAGCATTGTCTCCAGTAGCCCCGTCAAGCCCATGCAGAGGCCCATGGCTACTCACCCAGACAAGGCCAAACTGGAGTGGATGAACAATGGTTACAACAACAGCGGGGGGAACTCCATCAACGGCATCAGTATCCTCCCCAGCTATCAGGACCTGGTTGACGACCACTTCCGAAAGCCCCATGCCTTCGCCATCCCTGGCCAGTCCTATCAGTCTCAGACGCGGCACTACGGCCGCCTGACACCCATCTCTCCGGTGCAGCAGCAGGCAGCCAGTATGGCCAACCTGAACAAGCAGGAGGGCTTCGCTGTGCCCGCCCCTCTGGACAACAAGGCCACCAGCACATCCTCAGCAGGCGGGACCTTCCGCTGTCGTAGTGTGAGCCCTGCTGTGCGACAGCGAAACCTGAGTGGCAACCAGGGCCTGCAAAACATCCCCCGAACAGTAGTGTCCCCCTTCACCTCCCCCGTGATCCCCGAGATGATCAACATCTTCGCCAACAGCCATGGGGACGTCAGCGTCAGCAGCATGGCACAGAGGAGCCAGTCTGTGCCTGTCAATGTGATGATGCAGACAGAGGTGCTGCCCATGCAGGGCCAGACCAACAGCAAAAAGATCACCAACGTGCTCCTGAGCAagatggacggggacagtgacgACGCGGTGCGGGGCCTGGGCATCAACAACCTGCCGTCCAACTACACAGCCCGCATGAACCTCACCCAGATCTTAGAGACCACACCCAGCTTCCCCAGCAGTGCCAACTACCAGACTCTGACTTCCAACGCTCCGAATGCGTACGAGTTTCAGAAGCCAGGTTACCTCATGAAGAACTCTAGGAACGAACAGATGAGTCTCTCAGCAGGTGACAGCCAAGCACAATCAGCTACTGGAGAAGAGCAGCATCAGCAGAGCCAGCCTATGCTAGTGGCCCAGAAACTTCAACAGCAGCAGCTAGATTTCAGTACCACTGTTAAAGACCTCTTAGCGGACGGCAGCCTTACTCCTGGCAATCGGCTCGTGAGACAGGTGTCAGAACTCAACGCTGTGGGGTCTGATTTTCGACTGACCTCTGATCTTTCCAGTAGCATCAATGACCTGAACAATTTGGACACAAACCTTCTGTTTGACCCCAATCAGCAGCAGGGACAATATGAAGACTCTACACTGGAGGAACTGAAGAATGATCCGCTGTTCCAGCAGATTTGCAGCGAGACTGCGAATTCCAATGGATTTGATTGGCTGGAAAGTAAAGACCAGCCCACAGTCGGGTTAATGGGTTAATATGGGCTCTGCTTTTATTTCATGAGGGtgaaatagtttttaaaaaatcatcTTTGTAATTATTCACATTGACATTGTATAGCACACTGCAACACTCTGGAAACAATGACTTTTGTCCAGTCTAAGTGCCAGGCTGAACATAAATGATCACTCTTACAAATATGCTGGTTTTCTCTCACAGCTCATTGCTGGTGCTGACTCATCCATTTCTCCCTCTTTAGACATCAAGTCATTCAAGAGCATTTAAATCAAGACAGTAGTAGAACAAGTATTTTTACATTTTCAGGAGGACACAGAAGATATGAAGAGATCTCTTAAAGATTACAAACATCTATCATTTtggttaatatttttgttcaggagCTCTTGACTAAAACAAGAGGTTTGGCAAATAATTGGTAACTTTTCCTCCCTCTGTAAATTGTTTTACTTCCATTGAGATAAAGTCTATATTCAGATGTATCAGACAAATCATTTGGAACTGCTTTAGAAGCATACTGTTGTGCAAGAATGTTAAATGGGGTGTATGTTCACCTAATATGCCCCTGTCCATCTCAATGAAGAGTTGAGATACCGAGACtattgtatgtacagtacatgaccTTGAGTGGGAATTTGCAGTAGCATGCAGTGGTACTAATGTTTCTCATTGTTTCAAGTCTTCTTAAGGATTGCAGGTGCTTCCAGGTGCAAGACAAATCAATGGTTTAAAAAATTCCCCCATAATCTGTAAATAAAAATGATCATTGGTCTACTTAAAGACCCATGttttatatatttccacactgaggttggaataatactgtgaaaattaaATATTGCCCTTTTTAGTGtaggagctgtttgaaaagacctccTGAAacgtcagcctgttttggtgagaTTTTTGGCctgcatggtgacatcaccaggcagtacatttagttaatagaccaataagagttccaaaccttctgccaataacagctagtttttaggtttcccctccccactcagtcctagcaaaattcttgcttgagaatttGTTCTTTGCCAAGAAGCTATTTTAGTTACTTTTTGaccattgttttcaattaaatcacagtaaggtacttaaagaaaggatttgatattgagataaaaactggACCTTTTAACGTACATTGTTTGCAATGATCTTGAGGCAAACTAGTTCCATTCTCTCAGAATTAGTATTTTTACAAGTAGGAAAACGGCAGCTGTTTGAAAAGGAATCTGTGTGACTACAGAATATTATTCAAACTATAGATTTAAAGGTCAAGATATACTGTCTGTATACTAAACTTGTCAGAAGATGTCTGATTGTCCATTTTGCTGACACGTTATGCAAACTTGACAAATAAGATATTGACCACTCAAATTCCAGTGTGCATGGTACAAAAAATATAGCCTAGGAAATTGAAATTTGATTGATGTATGGCTTTTCACCTTTTCAAATTTCCTCATGTCCCCCAGTAGTTAATGCACTTTGAGTACAGCGAAACTGAGAGCAGGTAGCTGAAGAACAACAAATGTTATCTGTTAATGGTGTCATTTTTTTAGGCTTGCTTCACACACATTTTGCCCTGCTGACGTTCTTACTGTATTTGAGCTCCCCAGTGTCAAAAGGAAAGGATTGGTTTGTTTGGAATAGTGTGGGTTTATGAGACTTAAAACAATCATAATAGAGACCTGTAATGGGGATAGCTTGCACTTTAGTGGCTGCAGAACTAAAGGGGATGGACTTTAAGATGGAGCTCAAAAGACAGTTAAATCTTGTACTTAAAACGTATAATGCAGAAGATGACCTTTTTCACCTATATCGATTTTTTTTAAGACTTGTGTAGGGCACTGGTGGGGATTGTTTTATTTACCTTTGTGACTATTTAGCAGGTATCATCTTAATTAACATAAATATATTGATTTAAGGAAGTGGAGGAATATATGAATAGGAATTTAACCTTATGACACCCCTATACCAAAGTATATTGACTGGAGATGACCCTGCCCTGTTTCAGTCATGTATCtatttggggaaaaatgactttCCTGGTTCTGATTTATTTTAAAACTATGCATTTTTTACTTATCAAAGCGGCTGCTACTGTCAAAGTAGGTTACTGCAGGTTTATGTAAATGTATGTCGTTTTCCACTTCTCTTTTTATTTGTTTCATATGTGTTACATACATTCAGTAAAACATGTGATGGATATGAAGTCATTTAGATTAAATTAAATTAGTTTTCCTTCTATGGTAAATTCAAACATATTATGCCATTGGATATTCAAAGTCCTTCCTATAAAAAAAGCCACTAAAGTGCATAATTTACTGTCATACATTGAAAGCTATTCCCCGTACATTAGTCTAGATCCAGTAGAAAATACAATACTATGGAATACTGTaatacagaattacataaacattTGTATAAATTGTCCTTTTCTTGAATAATGTTCTTGTTGAGTTCATTAATGCACTGCATTTTATTCGAACAGTGAAGGGACGTGTTTCACCTGGAGTCAAAAAAGGCATTTAGTGGTAAAGTACGGGTCATCTATTGCAGGTTTAAATGGCTTATAGTATAGTGAAGAACAGTGTGTGAATAAGGCATGCAACTCATAAAGGGAATAGCTAATTGGTCAGATCCTGTGGTTTTTATGAGCTTTTAATCTTCTGAGCCTTATATCCATACCAAAGAAAAACTAattagtgagagagaaaaaagcattaaataggatttttttttttttagaagaaGAACCCACAAAATTCCCAGCATTTGCCTGTTTGCCTGACATCCGTCAAATACCTTTTATATGGCCATTTGGAATTGTCCTTATTTCAAGTAGGATGGTTGAAAATAAATAATTTGAGGAAATTTTGAAACTGGCAACTGATCTGTAGCACTGGAAAACATGCTGAAAACCACACTACTGTTCTGGTTTATAAAAACCAATGTAGCAGGACAATATTGGGGTTAATTCAGTTGAAGTGTTCCTCTCATTTTGAATCCCACAGATTGTACATATGAAAGCTCTGACACTGTATTGTTATAACTTAAACTGGTTCTGTGCACCTGCACCCTCTGAAATGCTATATTGGTGATTTTGGATCAGGAGCCAGCTAAACTGTGCTTGTGTGTTTGGCTGCTGGCACCCTTTCTTGTACAGATAATGCTGTTTTTTTCtaaacttgttttttttgtttgcttCCTGAGATTTATATTGGTTGGCTTTTTACAGAAAATGTCTGCTTCGAGTGAGAAAATAGCATGGGtatttaaaaaaagtattataTATTACCAGGTTGCATAGCTATCTTTCTCTGACAGATTTTGTGCCCAGAACATTGCAATGGACATCGGAATGTCATGGTTAAAATTTCAACCAGCTTTGAAGGTTCATGTTATTGCACTAAACATTTAATGAACCCAGGCTTTGGCACCTATTTTAGGACAAATGCATCAATTGAAGCTccccaaatatttttttaaagagctTAACTACGTGAAAAAATTCTATACAGAAGTGTCAATTAAAAAAATTAACGCTAATTGTCTTGTGTAGCAATGTACATTAATCTCAATgagatactttttttttttttttttacttcattcTCATGAGAATATGAAACTCAATTTAAAGAAACATTTTAACAAATATTCTCAAATAAATCTTTCACATTGTTAAATGATATGTGTGCATGTTTGTAGAATTCTATTGTACAAAGTATTTGTAACCACTTTGCTGTAATTCAGGATTGGTCCTGTCAATCTGAACAGAAAGGTATAGCGACTCACAAGTTACTTGCATTGTTTGATGTTTACTAATTCAGAGTAATATTTGTTCTGTATGTTCAGGTTTTGAATCTGTTCTTTTTATTTAGATGTTTTTACTTTTTTTATGTAACTCTGTGAAATAGTTTTTTCTTTCAGAAACCATTGAAAATAAGCACTGATGTTTGTACTTAAACGAAGACTAATCCTGTCTGTTCTTCTTTAAGTGCACAGGGGTAGCTGAGTCCTGTGCTGTACCTTTCACAGACCTGGTATAAAGTCCCTTTAACCCTCTTCTTCATCTAGATCTGTAGAAATACCCTATGCCGTCTTGTTGTTGTCTAGTGTACAGCAGACCGTACAGTAATTTGATAAAGTTGCTATAGCATTTCAGCAAAGTTTCCTTCTTTTTTAATTGAAAGTGCTCACTGATgttgagattttttttaaagggttTTAAAAAccaataaacttttttttaagtACTTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU608977 lncRNA upstream 203231 68237634 ~ 68238106 (+) True G537877
TU608954 lncRNA upstream 222047 68219053 ~ 68219290 (+) True G537857
TU608948 lncRNA upstream 227879 68213150 ~ 68213458 (+) True G537851
TU608921 lncRNA upstream 249909 68155288 ~ 68191428 (+) True G537826
TU608914 lncRNA upstream 283911 68144881 ~ 68157426 (+) True G537819
TU609162 lncRNA downstream 2963 68487682 ~ 68526289 (+) True G538021
TU609152 lncRNA downstream 33035 68517754 ~ 68525267 (+) True G538011
TU609149 lncRNA downstream 62437 68547156 ~ 68547476 (+) True G538008
TU609151 lncRNA downstream 64413 68549132 ~ 68549490 (+) True G538010
TU609803 lncRNA downstream 141726 68626445 ~ 68626777 (+) True G538507
XM_021607387.2 mRNA upstream 8258 68409217 ~ 68433079 (+) False LOC110526420
XM_036980820.1 mRNA downstream 10310 68495029 ~ 68546149 (+) False LOC110526425
XM_036980819.1 mRNA downstream 10311 68495030 ~ 68546149 (+) False LOC110526425
XM_036980821.1 mRNA downstream 20187 68504906 ~ 68546149 (+) False LOC110526425
XM_021607395.2 mRNA downstream 25236 68509955 ~ 68546149 (+) False LOC110526425
XM_021607396.2 mRNA downstream 25236 68509955 ~ 68546149 (+) True LOC110526425
TU608686 other upstream 673724 67766756 ~ 67767613 (+) True G537617
TU608672 other upstream 684719 67754556 ~ 67756618 (+) True G537606
TU608066 other upstream 1330709 67109676 ~ 67110628 (+) True G537032
TU608056 other upstream 1336429 67104411 ~ 67104908 (+) True G537029
TU608055 other upstream 1336475 67104411 ~ 67104862 (+) False G537029
TU609823 other downstream 194658 68679377 ~ 68681652 (+) True LOC110526436
TU609862 other downstream 219679 68704398 ~ 68704696 (+) True G538561
TU609930 other downstream 326400 68811119 ~ 68811890 (+) True G538607
TU610240 other downstream 421326 68906045 ~ 68906847 (+) True G538859
TU610258 other downstream 511364 68996083 ~ 69002828 (+) True G538877

Expression Profile