RNA id: XM_036980822.1


Basic Information

Item Value
RNA id XM_036980822.1
length 7253
RNA type mRNA
GC content 0.46
exon number 19
gene id LOC110526426
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68550900 ~ 68595583 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTACTCAACCGTAGAACACAGCACTGGGTGGGGTGATGTCCATCTGCTCCGAGGAAAAAGTAATCCCTGCTGCGATCAGGAGCGCAGTCACTTTCCTCTTGGATTAGCACGTAGTTCGACTGGAGGTAGTGGCTGAGAGAGTTAGTATGCGAGAACAATTTGaataaatggagtcttttaaaaGGAAATTATATCAGCGCTTCCTGTTTTTTGCGTTTTTCCTTCCAATCTCAGGTGTTTTGTGTTTTAGTGAGTTATTTTTTATCAAAGAGCCCCACGATGTTACTGTCATGCGGAAGGATCCCGTTATATTGGACTGTCAGGCCCACGGAGAGTCGCCTATTGCCATCAGGTGGCTTAAAAATGGAGTAAAAGTTGCAGAGAACGACCGCGTCTACATTCTCTCCAACGGCTCACTTTCTATTTCGGAGgtggagagcaggagaggagacaaATCAGATGAAGGGTTTTACCAGTGCCTCGCTCAGAACAAGTATGGAGCCATCCTGAGCCAGAAAGTCTGTCTTACAATTGCAAGTATCTCCCCCTTTACAAATCAGCCAACATCTATTGTGGTGACAGAAGGATCAGTCGCCCGTTTCACCTGCAAAGTCACTGCAAGCCCTCCTCCCATCATCACCTGGGAGTTCAATCGGGTCATGTTACCCCTGGCAACTAAAAGAATCACAGTCTTGCCCAGTGGCGTTTTGCAGATCCACGGGGTGGAAAAAGGGGATGCTGGGAACTATCGTTGTGTGGCGACCAACATCGCCAACCGTCGCCGGAGTACAGAGGCAACCCTCACTGTCACTCCAGCTCCAAGCCCCAAACTGCCTCAGAGACCTCGGATAATCGCCGGGCCCCAGAATTCCACTGTTTCCCTGCACCAAAGTGCCATCCTGGAATGCATGGCTACAGGGAATCCCCGACCCCTCATCTCCTGGAGCCGAGCCGACAGCAAGTCCATCGATGTTTTCAACACCAAGGTGCTGGGCAATGGCAACCTCATCATCTCTGACGTCAAACCCCAACACGGAGGAGTGTACATGTGCAGAGCCACTACCCCTGGCACACGCAACTATACCATCGCCACGGCCAACATCACTGTGCTAGCGCCTCCGTCCTTGGTGGAGTGGCCGGAGAGCCTGACCCGTCCGCGTGCGGGCACGGCCCGCTTTGTGTGCCAGGCTAAGGGGGTTCCCCTGCCCCACATCACTTGGCTGAAGAACGGAGAGAAGGTCCACTCCAACGGACGCATCAAAATGTACAACAGTAAACTGGTGATCAACCAGATCATCCCTGAGGATGATGCCATCTACCAGTGCCAGGTAGAGAATGAGCAGGGCTCTGTGCTGTCCATGGCCCGGCTCATAGTGGTGATGTCAGAGGACCGGCCCAGCGCGCCCAGGAACATCCGGGCTGACACTGTATCCAGCTCTGCCATCTTGCTGGCCTGGGAGAGACCACTGTACAACTCAGACAAAGTGATTGCCTACTCTGTGCACTACATGAAGGCTGAAGGCTTGAACAACGAGGAATATCAGGTTGTCATTGGCAACGACACAACCCGGTACATTATTGATGACCTGGAGTCCGTGCGGAACTACACCTTCTACATCGTGGCCTACATGCCCATGGGAGCCAGCCGCATGTCAGACCATGTGTTCCAGCACACCCTGGAGGATGTGCCCCTGCGTGCCCCAGAGCTCAGCCTCACCAGCCGCAGCCCCACAGACATCCAGGTGTCCTGGCAGCCCCTTGTAGCCAAGATAAGCCGTGGCCGGGTGTCGGCCTACCGCTTGTCCTATCGTACCAGCGCTGACCAGGCCGTCACCCAGCTGGAGCTTCCTGGGGAGAAGACCCAGTATCTCCTGGAGGGCCTGCAGCCCGACACCATCTACCTCCTCCGCATCGCTGCAGCCACTAGCGTGGGCTGGGGGGAACAGTCAGCCTGGACCTCCCACCGCACCCCTAAGGCATCCAGTGCCAAAGTGCCTCTGGCCCCTGAGCTACAGTTAGAGCCTCTGAACTGCACCACCATCATAGTGCGCTGGCAGCTGGCACCAGGAAACTCTGTCAGCATCCAGGGCTACAGGCTGTTCTACCACGAGGAGAGCCAGGCTGAGAGTTCCCCCATCCAGCTGCGTGTCCAGGAAAACAGGCACACCATTGGTGGCCTAGACCCAAGAAAGAAGTACCATGTGAAGCTCCTGGCGTTCAGTTTCATAGGCGATGGCTACCAGGCAGACCAGACTATCAGCACCCCTGGATGTGTCTCGGTTCGTGATCGTATGGTGCCCCCTCCGCCACCCCCTCACCACGTGTATGCCAAGGCTAACAGCTCGTCTGCCGTATTCCTCCACTGGGGGCGTCCAGCCTTCACCTCCAGCCAGATCGTCAACTACACCATCCGCTGTAACCCTGTGGGCCTTCAGAACGCCTCCCTGGTACTCTACCTGCAGACTGCTGAGAAGAACATCCTGGTCCCGGACTTAGAGCCCAACACCAGGTATGAGTTTGCTGTCCGCCTGCACCTTGACCAACTGTCCAGCCCCTGGAGCCCTGTGGTCTACCAGAGCACTCTGCCTGAAGCACCTACTCTGCCACCGTCAGGTGTGAAAGTGACTCTGATAGAAGACGACACAGCGCTGGTGTCATGGAAACTTCCAGATGAGCCCAACTTGGCGGTGACACGTTATACCATCTTCTACGCTTCCAGGAAGGCCTGGGTAGCTGGAGAGTGGAAGGTGCTGCAGAGGGAAGGGAGCATCACCATGGCTCTACTGGAGAACCTACAGCCGGGGAACATCTACCTGGTCAAGGTGTCTGCGTCCAACGATATGGGAGACGGGCCGTTTTCACACACCGTGGAACTGGCCGTGCAGAACGATGGCTCCACCTCCGGTCACAACCCCAGGCGCTCCCATGGCTCAGCTACAGTGTTCTCTAGTGGTTTCTACCACCTGGACCAGAAGTCAATGACAGGGATCATCGTGGGGGTTTGCATTGCACTGATCTGCATCATCATCTGTGCCTTCATCCTTGTCTGCAGAGGCAAAAACAGGAAATCGTCAGCTACTAAAGCCATCAGGCAGGAGTCTGGTCAGGTCCCCTCTGCTTCAGTCCACCTGGGCTCTGAGGGCCAGGCTGAGAATGCTGATGTTATGGTGCCAATGATGAGAGCAGACCACTTCATTGATGCCAAGGGGGGAACAAATCTGATCATCAATAGCCTCGGACCAGTTTATCCAATCACTGAGAAGAGAAATAAGTGGTTTTCCTTCAGTAATCAGAAAAAAATGAATGCTAAGAAAAGCCAGATCCAGAGGAAGAGCCATGGAATCTGCTCGTACCAGCCAAGAGCAACAGTGCTGTGCTACAAGGATGAGTCTCTGTCGTCACCCAACCAGCCCACCTCCCTGCAGGTCCTGTTTGGTCCACCTTTTGACACAGAGGGCTCCTCCAACAGCGAGGGCAGCCACGAGACAGGCGACTCGGGCCGTTACTCTCACGACGAGACAGAGATGACCAACCTGTCCTCTGGTCCCAGCAGCCGCCCTGcgtctctgagagaggagagcgggGGGTCATTCTGCAGTCCTGCCCAGGAGAGTGAGGGGGAGCTGGAGGAGCAGTCTCACCTCGACCTGGGGATTGGAGACTCCATGGAGAAACCGTGCAACCATCACCACTATCAGGCCCCAGACAATTCCCAGCCTGCACTTTCTCTCTAGCAGTCTGTGTGACCTCCCATCAATCTCTCAACCCTAAACTCACTCCACTGTTTTAAAAGACAATGAGCAGAAATCCAAAAATCCAGGTCTTTGGAAGAACTGGGCTCTGGTTTGGGTTCTGGTGAATGTGTactcattttatttttattcaatgtttgtgtgtatgtgtttgaaaGAAAAATCTCACCCACCATGAATGTTTCAAGAGATCGTCAAAAATGTGAAATGTGACTTACATTTTTGACAGTATTTAAGAGTTTATCACTGGAGCAAAGTGTAGAGTGAGCCCTTCTTTTGCTGATTATCTACCTCAGTTTACCTCTCGGTAAACTCCAACTATATATTTTATAATAACGACTTATACCTGAACTATGTAAGGGGTCTCTTCCTTTATGGAACAACTGATACTTCCTGATGGCAATAATTTGTTTTTGCTAGGTAAAATTCGTCCCGTATTCATTTTCCTCCTTGTTTATAATGAAGTACGGGATTGTAAGGGTACTGCAGATCTCAATTAAAGCGTTGTTATTTTCTTCTTTATCACAGGTTATTTAGACTATTTCTCAGGTTACTTTACAATAAGCTTTGAGTGTTTGGCTATGGTAGATTAAGGGCCAGTACAATTTACTACATAAGTTGCTGAAATTCAATAATAAGCCAGTATGACACAATGTAATTTTCAGGTTATCCATAGTAATAATGGTTATTTATATAGTAGTAATAACCATAGTaataatggttaaaaaaaaatctttttttttgtttgtcaatGTGCAGTTGCCCTTACAATTCCTGTTTTATACTACCTCTTTTTAAGcattattttgttgtgttactattTTCCTAAACTCAGGGAACAAGGTTTAGTACATTTGAAAAGCCATGTGTAATGTTCCATGGTTGACTGACAGGGTATCTTCTTAGTCCTGAACTGCTCATTGTAGGTGGTAGTTGCCATAGATCTGTATTGAATGTATCTCTAGAACATTGTCAGTTACGGTTCAGAGCCTTGTGATGCCCCACTCACAGGTGGAAAAACTTCAGTTTGAATTCAGTTGGAATAATGTGTCTGTGGTATGGCAGGCTATCTTTTTGGTTATTTTGGGAAGAACATACCAAAAATGCTTGTGTCGATGTGTTTCAATACAGCAGACCTTAAAAGCTTTATAAATGGCCTTAAATGGGGAAAGAGACCCTCAGATGTCGGAGACAAGCAGAAAGGATCATATACCAAAGTCCGATCCATCTGAGGTCCAACTCTTTGACACATGGGGATGGGAGAAGTGTGAAGAATGATTGTTGAAAACCAAAAGCGTTAAATCAGTGCGATGGAAGTGAATGAACACCAAAAAAAATTTTTATCTCTAAAGATATCTATATTTTTGTTGACGTTTATGTACTACTGAGTACAGATTTTAGTTACTTTTGTTCTTTAAGTAGTTGATACTTTACCATAGAGTAGAAAAATAAGTTTAGCACTTGTCAGATTAGTTTGATTTGTTGATCACAGCCAATGTGCAGCGGTGACTGATGCTATCATACAAAGTAATTGTTTGCTCCCTCTGTTTGTTTTTGATCTCTCAGCGGGTCCCTGGGAAAATTACAATGAGGTTTTTCTCATGCATTAGACCAAAAATCTAACGCAGATCAGTTGAGATGCTGCTTCTAAGACAAAGCTTTGCACATGTGTGCCCCCGTTCTGTGACCAACTGAGTTGAGATGCGGGTTCTCTCAGAAAGTGCCCCCAGGATTTTGGGCCCTTGATAATGGTTAAAATGACAATTATAATCAATGTCATGCACACTAACCAAATCACCCTATTATTGGTTTTCTTTAGAGCTTTACTGTTGCAACTAGATGTGTACATTGTAGGGGGAAAGTATACTCCGGAGCTATATACAGAATATTATATTGATTCTCATCTTACATTGCAACAGTATTTTCAATCAACGGATTTCTAACTAATAGGATGACAGTTTGCATGAAGTGTGACACAATCAGTTTTACTTTCTTTTGAATATCAAACAATGTATACCAAAGAATTCAGTTCACTGTTGCGCATTGGCAAGAGATCCATTTAGACATATATCTCTGCATGATATTTTCTCATTTTATATGGTTCCAAAAGCTTTATCCCCATTTAGGGTTTGATTACTACTTAATAAATGGGTGTCTATTAGACCACAAACCAAGATGAAAGTGGTAAACAGTTAGTGCTTTTAAACATGCATTGTTATTTGTCATTGAAGCAAAAAAATAAACCAATTTTTCtacattattttttactttttctCACTGGaggagaaatatatattattgttTTTTCAATGGGGTTTCATATACCCCAGTTTTGAGAAAGTACCAACTGAATTTAGTTTTTTCCTAGATGCCTAAAATGTATTAATCTTTGATACGAATGTGAATACTTCTTTAAACTGTTGTAGATGATCATTAGTCTAAAATGCTGTGTTAAAATGTCAAGTTCATATTGTATATGGAATATTTTAGTTGTTTTTGCTTTTTATTTACATGTGTAATCCTCTGCATTGTTATAATGCCCGGTGACTGCAATCCAACTCTGATAACAACTAAAAGCTGGAATAGACAAGTTATTATTGAGCAGTTGCAGTAACagtattgtttttgtcttttcaATTGTGATAAAGAGTAACCATAGGGTTCTCATTCTTATATATGTTTTCAGAATGTTGGAGAGGGTTCTGCATTCTCGTATTGGTTGTGAATGTCCAATAAGTGATATACTGTCTTCTACCTCAGGTTCCTCTTCCAGCTTTTGATAGAGATGTGATGGATGCTATAGTCAGGGGGAGCCAAGAGATGAAAGAACGAGTGATGCAGATCCAGTCCTGTGTCTCTTAAATGTCAAGAGTTGTGTTATTTTTTTTCCTGAACATGTGAATATAAAGGGATGAAGTGGAGGACTTGGTGTGAATCATAATTATCTGGTGCTCTGAGTCCCCTTTTCGTCTGCAGTCACGTTTTTCTGTAAAGGCTGTGCTGCTGGCTTTAGCTGCAGTGGTGGAGTGCTGTGGGTCATTTACAGTTAAACTCAGGGGAACCCACAGCTGCTCCACAGTTGTAGCGAGAGTAGCTTTGGGACACAACATTGGGAGTCTATGTAACCAATACACACTCTCGTTGttgtgttttgtcattattttgtGTTAATGTTTGCTCTTTGATCACAACACCAACAGCTTTTCTTCAAGGTATTCAAGCAAGCCTTGGTCCTTACAACTTTCTTCATGACAAAAATGTTATAGCCTACTTGTCCAATTAAAGTTACAAATAATTTAAACAATAACTAATTCTGAGAATGACTGATtgagtttaaataaaaaataaacaatgtgAACTTTCTTGCACGTATTGGTATGTCTGTCCTCACCAATATTAGAGTATTATTATAAAACTATTAGAGACTGTATTAGAGTAGCTAGTATatttagtacacacacacacacacacacacgggtgtacacacacacatcagcactG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU609151 lncRNA upstream 1410 68549132 ~ 68549490 (+) True G538010
TU609149 lncRNA upstream 3424 68547156 ~ 68547476 (+) True G538008
TU609162 lncRNA upstream 24611 68487682 ~ 68526289 (+) True G538021
TU609152 lncRNA upstream 25633 68517754 ~ 68525267 (+) True G538011
TU609137 lncRNA upstream 102005 68445524 ~ 68448895 (+) True G538001
TU609803 lncRNA downstream 30862 68626445 ~ 68626777 (+) True G538507
TU609853 lncRNA downstream 100124 68695707 ~ 68695910 (+) True G538554
TU609854 lncRNA downstream 101292 68696875 ~ 68697228 (+) True G538555
TU609860 lncRNA downstream 107042 68702625 ~ 68702966 (+) True G538559
TU609863 lncRNA downstream 109182 68704765 ~ 68705103 (+) True G538562
XM_036980820.1 mRNA upstream 4751 68495029 ~ 68546149 (+) False LOC110526425
XM_036980819.1 mRNA upstream 4751 68495030 ~ 68546149 (+) False LOC110526425
XM_036980821.1 mRNA upstream 4751 68504906 ~ 68546149 (+) False LOC110526425
XM_021607395.2 mRNA upstream 4751 68509955 ~ 68546149 (+) False LOC110526425
XM_021607396.2 mRNA upstream 4751 68509955 ~ 68546149 (+) True LOC110526425
XM_021607414.2 mRNA downstream 1535 68597118 ~ 68603453 (+) True LOC110526429
XM_021607402.2 mRNA downstream 10013 68605596 ~ 68623796 (+) False LOC110526427
XM_021607401.2 mRNA downstream 16728 68612311 ~ 68623796 (+) False LOC110526427
XM_021607400.2 mRNA downstream 16732 68612315 ~ 68623796 (+) False LOC110526427
XM_021607406.2 mRNA downstream 16732 68612315 ~ 68623796 (+) False LOC110526427
TU608686 other upstream 783287 67766756 ~ 67767613 (+) True G537617
TU608672 other upstream 794282 67754556 ~ 67756618 (+) True G537606
TU608066 other upstream 1440272 67109676 ~ 67110628 (+) True G537032
TU608056 other upstream 1445992 67104411 ~ 67104908 (+) True G537029
TU608055 other upstream 1446038 67104411 ~ 67104862 (+) False G537029
TU609823 other downstream 83794 68679377 ~ 68681652 (+) True LOC110526436
TU609862 other downstream 108815 68704398 ~ 68704696 (+) True G538561
TU609930 other downstream 215536 68811119 ~ 68811890 (+) True G538607
TU610240 other downstream 310462 68906045 ~ 68906847 (+) True G538859
TU610258 other downstream 400500 68996083 ~ 69002828 (+) True G538877

Expression Profile