RNA id: XM_021607406.2


Basic Information

Item Value
RNA id XM_021607406.2
length 3449
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC110526427
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68605596 ~ 68623888 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTTTAGTGTTGCTGACGAGACGCTGATTGTGTTGTTGTTGAATTGAAATCGATGAAGCTGTGAGAGCGCAATTGTGACTCAAGAATCGTTTGCAGAAATTCTTACTTTCTACGTTGGAAACTTACTGGTGTGCTCCATTGTTTTTACCAGCTGGCGGAGCCATGTCAGAGAGCTCAAGTGACACAGAGTCCTCCTGTGGGTGGACTATCATAAGTAATGAAGGTTCAGATATTGAGGCCCTGGGGCCAGACAATGGCCTGGAATGTGGGTCTGATCTCCCAGAGAGCGCAGTGCTGGAGCCAGAGCTGCTGCAGGACCAACCCACCACTCTCTCTGCTGAGTGCActgaggagaggggtgagtcATCTCTTGATGCCACTCTGAAAGAAGAAACCTTAGACGAGACATTGTCTGCTTCTGAGGCTGGAGGTGAGGTGGCCGGGGACGAGCATGTGACTCTGTGCTCCTCCAGCGACCACTCTGACATTGTGACTCTGGGCAACACGAGGGAGACTGAGCTCGGGCCTTGGGATGAGcagacagtggaggaggaggagggagcagtCAGTGAGGAGCTCTACCTGGGCACCTCCTCCAGCAGCCAGTACACCTTCAGCGCAGCAGAGACTGCCAGGCTGATGATGGGCCACTGGAAGCTTCCACAGAGTCTGTGGGACTTGGGCTGTCATCTGAAAGGGCAGATGTCTGGCAGCCGTTCTCTCTCAGTTTTCCCTGCGGAGCAGCCTGTGGTTGCAGACTCCAGCAGCAGtgaggatgagggaggagagcAGGTCACCCCAGTAGTGCGGAGGCGCAGGGTGAGGAAGAGCACCATTAGCTCTGTGGCTGAGCATGGAGAGGAGGTGCAGGAGTCTGGCCACAGTGACCGAGAGGAGACTCTAGAGGAGGAGCAGAAGGAGgtacaggaggaggaggtgcaGCAGGAACCTCGCGTTGCTCCCCCACCTCAAGGCCATGTTAGCAGCACCCTTAACAAATGTATCCTACTAGCCCTCATCATCGCCATCAGCATGGGCTTTGGTCACTTCTACGGAAAATTTGAAGGTACAGTATGGAGTGGATGGTTTGAGGGCACAGTGCAGGTTCAGGAGAGACAGAAGATTGTGGAGAAGATCTGTGGAGTGAACGACCTTGGTAATTCGAGAGATCTGCAGCCTCAGTGTCATAAAGGACCAAATGTCATCAACAAGGACCAGAAAGAAGACTTGGTCGTGAAACTGAAGCAGACTGGCGAGGAGAGGGTTAAGATTGAGTCTCGGCAGAATCACCTGATGGTGGAGAACCAGCTGCTGAAGAGTTCCCTGGAGCGTGAGGAGGAGTCCCTGTCCACCCTTCAGGAGGAGCTGAGGAACCTGCGCTCCCAGATCCGAGACCTGGAGGAGACTGGGGCCGGGGCCGACTCCATACTGTCTGAGAACCAGAGGCTGAAGGACCACCTGGAGGAGGAGACGCAGCGCCTCCGCAGCTTCGTGAGCCAGAAGGAGGCCCTGATGGCTGAGGCCCAGACGCTGAGGAGGGAGCTGGATAATGAGCGGAGCGTGACTGACCAGCTAAGGGAGCAGCTGAGCAGCCGCAACACCAGGGCCGGAGGAGAGGCTGACCTGGAGACAAAGGAGCTGCAGTCACGGCTCATGGAGTTGCAGAAGAAGCTGAGCTTTGAGCAGCAGCGCTCCGACCTTTGGGAGAGGCTCTATGTGGAAACCAAAGAGGAGAGGGCCAAGGGAGACAAGAAGGCCAAAGTCAAGAAGTCCAAGGACGGCGTGATAGGGAAGGTGAAAGATACTTTTGATGCGGTGAAGAACTCCACCAAGGAGTTTGTGCACCATCACAAAGAGCAGATAACGAAAGCCAAAGAGGCTGTGAAGGAGAATCTGAGGAAGTTCTCAGATTCTGTGAAATCCACCTTCCTCCACTTCAAGGACTCTGCTTCGCGCATGATGGACAAGACTTACCGGCCTCACAATCGGAGGTTTCACGAGAGGAAGGATGCCAAGACTGAGCAGCAGGAGCATCATAGAGACCATGGAAACAAGCACTCAGAGGAGGAACCATGGCAGCCCAGAACCCACAAGCCCCTGCATCGTCACCCTCGTAAATCCACTGACGACTCTTTCCAGGCACACCATAACACCCGGAAGTCAGGGAGTAAAGTTGAGGAGGACCCAGACGCTGAGCAACAGCAAAGAGGAGTGCTCAAAGGTTGCTCTGGGGTTTTCGACTGTGCCTACCAAGAATCCATGAGCCTCTTCAACAAAGCCATGGACCCCATAAGAGCAAATGAGTTCAACCAGCTGCTTCACAGCTACCTCCAGCAGGAGGTTGACCACTTCCACCACTGGACTGAGCTGGAGAGCTTTATTAAAAATTTCTTTCACAACGGCGTCTTCATCCACGATCAGATGCTGTTCACAGACTTTGTTAGTGGTGTGGAAGACTACCTGGAGGACATGGATGAGTACCATGGCCACAACGATGACGTCTTTGAAGATCTTGACGAGTATGTCTACAGGCACTTCTTTGGAGATACCTACTCAAAACGTTACGGGTCAAGTAGACTCTTTGAGGGGCCAGATACGGATACTAAAGAAGAAAGCCTAGCAAAGCAGCAGCATCAGAGAGCCCGGCCCcggacacaaagagagaggaagtggagcagagcaggacggaacacagacagacacatggctGATGTAAAAATAGAGTTGGGTCCTATGCCCTTTGATCCCAAATATTGAGAATAATCTTACCTAAGGAATCCGTTTTTATGATGGCTGATATTGTAGTTGCAAAGTCTATTTAGGATGTGTTTGATGGAAATCCTTCTTATTCTTCTGTTTTTGTGATTTTGCACAATGTTCTTTTAACACTGCCTGAATGTCCCCTTGCTTCCTGTGTTGTGTAAGCAATCCTTAGGTTAGTAGCAATGGTGGTGTATCTGACTGCATCTAATCTCATGTGCACAAAGAAAATTATTGCTGCAATGATTTAGCCATGAATTCTTTAAATATGACTAACTAGAGCAATTAAACATGGGAATACAGTAAGTAAATCTGACAGTAGCTTACTCTGTAGTACACATTCATTGTCATCAGGTCATTTGTTACATGTTCTTTTTAAGAGCCATCACTGACTGTAATTTGCACAACATTTCCTCTCTTTGGGCCTTTTTTTAAAGTTTTACTATTTGTCTACATTTAGGCCTATTGTGAATGAATGATTCATTGGATGGATCCAACAATGGAAATAAATAGTATTTTTGTCAGTGGCATTGAAGAGCAGTAAAACCACAGATACTTTTTTTCACATAGTATTGAATAATGCAAGAAGCCGGTTCCGCAGTTGATTTCTATACTTTGCTGCTACATTACATATTTGTTTAAAATGGTGAAATAAAGTGCAACTGTGTTCAGTAACATTCCAACTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU609151 lncRNA upstream 62825 68549132 ~ 68549490 (+) True G538010
TU609149 lncRNA upstream 64839 68547156 ~ 68547476 (+) True G538008
TU609162 lncRNA upstream 86026 68487682 ~ 68526289 (+) True G538021
TU609152 lncRNA upstream 87048 68517754 ~ 68525267 (+) True G538011
TU609137 lncRNA upstream 163420 68445524 ~ 68448895 (+) True G538001
TU609803 lncRNA downstream 2649 68626445 ~ 68626777 (+) True G538507
TU609853 lncRNA downstream 71911 68695707 ~ 68695910 (+) True G538554
TU609854 lncRNA downstream 73079 68696875 ~ 68697228 (+) True G538555
TU609860 lncRNA downstream 78829 68702625 ~ 68702966 (+) True G538559
TU609863 lncRNA downstream 80969 68704765 ~ 68705103 (+) True G538562
XM_021607414.2 mRNA upstream 8862 68597118 ~ 68603453 (+) True LOC110526429
XM_036980822.1 mRNA upstream 16732 68550900 ~ 68595583 (+) True LOC110526426
XM_036980821.1 mRNA upstream 66166 68504906 ~ 68546149 (+) False LOC110526425
XM_021607416.2 mRNA downstream 3778 68627574 ~ 68640613 (+) False LOC110526430
XM_021607415.2 mRNA downstream 6218 68630014 ~ 68640613 (+) False LOC110526430
XM_021607417.2 mRNA downstream 9863 68633659 ~ 68640613 (+) True LOC110526430
XM_021607418.2 mRNA downstream 16994 68640790 ~ 68644591 (+) True LOC110526432
XM_021607420.2 mRNA downstream 21032 68644828 ~ 68664392 (+) True LOC110526434
TU608686 other upstream 844702 67766756 ~ 67767613 (+) True G537617
TU608672 other upstream 855697 67754556 ~ 67756618 (+) True G537606
TU608066 other upstream 1501687 67109676 ~ 67110628 (+) True G537032
TU608056 other upstream 1507407 67104411 ~ 67104908 (+) True G537029
TU608055 other upstream 1507453 67104411 ~ 67104862 (+) False G537029
TU609823 other downstream 55581 68679377 ~ 68681652 (+) True LOC110526436
TU609862 other downstream 80602 68704398 ~ 68704696 (+) True G538561
TU609930 other downstream 187323 68811119 ~ 68811890 (+) True G538607
TU610240 other downstream 282249 68906045 ~ 68906847 (+) True G538859
TU610258 other downstream 372287 68996083 ~ 69002828 (+) True G538877

Expression Profile