RNA id: XM_021607415.2


Basic Information

Item Value
RNA id XM_021607415.2
length 1677
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC110526430
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68627574 ~ 68640613 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTACCGTttggcgagagagggaggggctggCTCACTGCAACTGGACGGGAAGTGATGTTACATTGATTGTGAAGAGGGTTAATGCAACAAATGGATCGAAAGGATTTTGTAAACCCAATTTAGTGAGTTTTTTGTTGTTAATCAACCAATTGTCATCGCTTTTGAGAGGGCGCTTCTACACGAAACACCAATAAGAAAGTGACGCACATACACTGGTCTGAAATAAGCACTCACTATGTCTGATGGGGACTATGATTACCTCATCAAATTCCTAGCCCTTGGTGATTCTGGAGTGGGGAAAACCAGCTTTCTGTACCAGTACACAGACAAAAAGTTTAACTCCAAATTCATCACTACAGTGGGCATTGATTTCAGAGAAAAACGAGTGgtATACAAATCAAATGGTCCAGAAGGGGCAGCAGGCAGAGGACAGAGGATTCATGTTCAGCTGTGGGACACGGCAGGGCAGGAGAGGTTTCGGAGTTTGACAACAGCTTTCTTCCGAGATGCGATgggcttcctcctcctctttgaccTCACCAATGAGCAGAGTTTCCTTAATGTCAGAAATTGGATGAGTCAATTACAGATGCATGCTTACTGCGAGAATCCAGATGTTGTTCTCTGTGGCAACAAGTGTGACCTACAGGAGCAGAGGGCAGTCCGTGAAGATGAGGCCCGTGAGTTGGCAGAGAAGTATGGAATCCCTTACTTTGAGACAAGTGCAGCTAACGGGCAGTTTGTTAGCCAGGCTGTGGATGTCCTGCTGGACCTCATCATGAAGAGGATGGAGCGCTGTGTGGACAAGTCCTGGATCCCTGATGGAACCGTGCGATCCAACGGACACAGTGGTCACACAGACATCACAGAGCCCAAGACCCAGGAGAAGGGCAAATGTGCTTGTTAGGGTCCACATACAGATAGTGGTTACACCTTCAGTTCCCTTCAGTGATGTTTTGGTAGGACTGGGCTGTATGGCATGTGATGAAAGGCATGTAACATTTGTAAATCAATGGTGTCATAGGAAGTTTTGTCAAGGTGGGGGGGTGTTTATGATGTGCAAAGCTGAAAGTAACCACTAACCCCTGCCAAATGTGCAAGAGCATTATTGTGTTTTGTTAATTTGATTATGCCATTTGGAGTGGTGCCTCCATTCACGTGTCAATTAAGTGCCTTTTATGTTTTCATTTCAGATAATATTATATGCATTTTACATTGTGAAACATAAAAGTGTATTGTAACTACTTTCTAAGATCCAGTAGAATTGTGAGAAGCCACTGAAAGTTGTATTAGTTGAGAACACTTCCCTGTGTATTAAAGGGAACCCACCCTTATTACATTTAACTTTTTgacacaggatatttttgtgaCAATGCACTTCCATTTATTCTTGTACAATGTAAAAGTCCTGAGCACATGCAATCTGTAGTGAATAGAGTGATTTATTGTATAGTTCTGCTCTGTAGTATCTGAGTAGCAGAGTCATTTGGGGTCTTTCTTTTTATCACGATGTCGGGATCTTGGGTCTATCAGAAATGTTTGAGGTTCCACGTAAATCCATGCTGATTTTGTTACACAATGTGCATTAAATCTGCTGTATTCTGTCAAACACTTTTGTCAAATATGTTAACCATATCCTTTATTccagaaaataaatattttattatttattaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU609803 lncRNA upstream 3237 68626445 ~ 68626777 (+) True G538507
TU609151 lncRNA upstream 80524 68549132 ~ 68549490 (+) True G538010
TU609149 lncRNA upstream 82538 68547156 ~ 68547476 (+) True G538008
TU609162 lncRNA upstream 103725 68487682 ~ 68526289 (+) True G538021
TU609853 lncRNA downstream 55094 68695707 ~ 68695910 (+) True G538554
TU609854 lncRNA downstream 56262 68696875 ~ 68697228 (+) True G538555
TU609860 lncRNA downstream 62012 68702625 ~ 68702966 (+) True G538559
TU609863 lncRNA downstream 64152 68704765 ~ 68705103 (+) True G538562
TU609864 lncRNA downstream 64575 68705188 ~ 68705423 (+) True G538563
XM_021607403.2 mRNA upstream 6126 68612315 ~ 68623888 (+) False LOC110526427
XM_021607409.2 mRNA upstream 6126 68612315 ~ 68623888 (+) True LOC110526427
XM_021607404.2 mRNA upstream 6129 68612315 ~ 68623885 (+) False LOC110526427
XM_021607405.2 mRNA upstream 6129 68612315 ~ 68623885 (+) False LOC110526427
XM_036980824.1 mRNA upstream 6218 68612315 ~ 68623796 (+) False LOC110526427
XM_021607418.2 mRNA downstream 177 68640790 ~ 68644591 (+) True LOC110526432
XM_021607420.2 mRNA downstream 4215 68644828 ~ 68664392 (+) True LOC110526434
XR_002473955.2 mRNA downstream 38704 68679317 ~ 68681675 (+) False LOC110526436
XM_021607435.2 mRNA downstream 134861 68775474 ~ 68780317 (+) True LOC110526444
XM_021607440.2 mRNA downstream 176326 68816939 ~ 68818769 (+) True LOC110526448
TU608686 other upstream 862401 67766756 ~ 67767613 (+) True G537617
TU608672 other upstream 873396 67754556 ~ 67756618 (+) True G537606
TU608066 other upstream 1519386 67109676 ~ 67110628 (+) True G537032
TU608056 other upstream 1525106 67104411 ~ 67104908 (+) True G537029
TU608055 other upstream 1525152 67104411 ~ 67104862 (+) False G537029
TU609823 other downstream 38764 68679377 ~ 68681652 (+) True LOC110526436
TU609862 other downstream 63785 68704398 ~ 68704696 (+) True G538561
TU609930 other downstream 170506 68811119 ~ 68811890 (+) True G538607
TU610240 other downstream 265432 68906045 ~ 68906847 (+) True G538859
TU610258 other downstream 355470 68996083 ~ 69002828 (+) True G538877

Expression Profile