RNA id: XM_021607422.2


Basic Information

Item Value
RNA id XM_021607422.2
length 4948
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC110526435
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68665174 ~ 68677702 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCGCTAGGTGAGTCTCGCGCACACtgccttcccttcccctcctctctctgtcggtTATTGTGAAGAGATTGAACGATGAGATCGCTCGCGCTCGCTGTCATCAGTGCCGCCCTATAGAGACCCCTCAGCCCCGAGGCTCGAATACAACGACCTCACCCCCCGCTCCAAGAGGGACGGAGCGCAATCCATAGAGGCACGGAGAAAAAACCCTGTTCGGACCCGGCTTCATTTGCCCTCAATCCGGGCCTCATGCTGTAGCAGActgaacgagcgagagagagagacaaacatacAGATTGAGTCGGCGAGGGACAGGGCGGAATAGAGGAGAAGAAGGGATTGTTCATTCGGCTCTAGACATGGGATGTACACTCAGCGCTGAGGAGCGCGCTGCTCTGGACAGGAGCAAAGCCATCGAGAAAAATCTGAAGGATGATGGAGTCACTGCCGCAAAGGAGGTGAAACTGCTACTGCTTGGGGGAGGAGAATCGGGCAAAAGCACCATCGTCAAACAGATGAAgatTATCCATGAGGATGGCTTTTCTGGGGATGATGTGAAGCAGTATAAGCCTGTGGTCTACAGCAACACCATCCAGAGTTTGGCTGCCGTCCTCCGAGCTATGGACTCTCTGGGCATCGAGTACGCAGACAAGGACAGAAAGgcGGATGCTAAGCTGGTGTGTGATGTGGTCACTCGTATGGAGGACACAGAGCCCTACTCAGCAGAGCTGCTGACAGCTATGAAGCGTCTGTGGGCCGATGCCGGGACCCAGGAGTGTTTCAACAGGGCCAGGGAGTACCAGCTCAATGACTCCGCTGCCTACTACCTGGACAGTTTAGACCGTATTGGTGCTGCTGACTACCAGCCCACCGAGCAGGACATCCTGAGAACTCGAGTCAAGACCACTGGCATCGTGGAGACCCATTTCACCTTCAAAAACCTGCACTTTAGGCTGTTTGATgttggaggtcagaggtcagagagaaAGAAGTGGATTCACTGCTTTGAGGATGTGACGGCCATTATCTTCTGTGTGGCGCTAAGTGGCTATGATCAGGTTCTGCATGAGGATGAAACCACTAATCGCATGCACGAGTCCCTCATGCTCTTCGACTCTATCTGTAACAACAAGTTCTTCATCGACACCtccatcatcctcttcctcaacAAGAAAGATCTGTTCGAGGAGAAGATTAAGAAGTCACCACTGAGTATCTGTTTCCCTGAATATACAGGTGCTAACACTTATGATGATGCTACCGCATACATTCAGGTGCAATTTGAGAGTAAGAGCCGTTCGCCCAACAAGGAGATCTACTGTCACCTGACCTGTgccactgacacaggaaacatcCAGGTAGTGTTTGACGCAGTCACTGACATCATCATCGCCAACAACCTGAGGGGGTGTGGCTTATACTGAGGCCTAGCCCTGCACAGAGGTTGCATTAGAGGGCGTGAGgtggttaataataataataattttgatGATATTAAAAGGCATAATTATGTAAATCTACACGTCCAAAGGGACCCAAAGAGCTGCCGCCAGACACCACGACGGATTCTTTGCCATGTTCTGTTCCTCTATTCCTTTTTTTAATTTCAGAATTCCACCACCCCTCTTTTGTTTATTTGTTATCAACATGTGTTTCCTACTGAATGTCTTTCATGTTTTGTTGTTGATTGTATGAACAACTGTAAGATGTGAATCAGAAAAGGGACAGTCCAAGGGGTATATTCTGTTTTCGTGCCATGTTTCGCAACAAATTAGATATAAATGTTATGCATAGAGCGGAGAAGGTCCTCTTTTCCTTGTGATAGAGATTTGTGTCAGCTCTATACATAACATCTCTATCTGCAACATCCAGAACATTGAGCCAAAATAAATGTACCCCTTGGTGCTCCGTTTGCAGAGGTGATGTTGTGCTCTAGGTGATGATGTAATAGGGGAGGTACTGGTGGCTGGGGCTCGTAGTGGGGGTTCTGTCCAGCGTTGGATAGAACCCCCCTCTCTGTTGGACTCACACAGGGCTGCTCTACATGAGCTCCTTCTGCTCTGTTTTATTCCTCTCTCTTTCAAACATCCAGAAGGGGGGGCCGTTCTGTTTGTGTGGCAGGCTCTGCCATTGGTCTCCTGCAGTGTGATGAAATGCCTGTCAGCCAATGATATATCTGTATCGGGTGTGATATCAGTGCCAACCTTCTGAGCATGACAGATAGGGGAATAGAATTAGAGATCATTGATCACTTTCACACTATCTTTACAATATAATGTAACTGAAAGGACGCGTACGCTTTATTATCATCAAATTATTTATGCATTTTATTTCAACCTCATGCCCTCCATGCTTCCTCCTACCTCCTAGAATCCCGTGCCACATATTTATTTCCTGTCCTGTCAGACCGGTGGAACACCACTTCCTGTCTCAGTCTCAGAGGGTCTAGAGCTGCTCGGATGGACCGTCTCAAATGTCACCTCCcatgtagtgtactacttctTCAAAAGTAGTACATCATAGACTTGCACACTCAAGTCCACTGGTCAGTGATGTATCATATGGTTGTCCCCTGGTCTCCTTTCACTTATCACTTATCACTGAGATGAAAGGACTGGATAGGTTTCCACCGTGTTGTTTTCACTCACTAGTCCTTACAGATTTGTAGTTTTAGGAGAGGACAGCCACAGACCACTGACCAGTCTCTCTGCTTGTTCAAAAGGATCTTCCTGGGTGCTCTTTATGTAATAAAACAATATGTGAATGCTCAGTTATTTGgaagttgaggtaatttgtagaTTAGATAAGCCACACAGTGCTTAGCTCAGGATGACCCTTGTGAGCAAGCATGCTGAATTCCAAATCCATCCATACTACCCCCTCTAGGAATTCCCGTAGATTTGAAAGGATTTGATTGGTTTAACCTTTTCATGTCCATAACGGAAATGTGTAATATCCTTTAGTACACATGTTGTCTTAGTTTATTGATGGACAAATCTGAAGATTTTATTTACATCTGCCACAGAGTTTGTCTACAACAATGTGAGTTTTTGATATTGTACTATATTTAGTCTTTGGACACATGGGGTTACTGGTTTTTACACATTTCATGAATCAAGTCCTATAAATACATGTTCAAATTATCAGATCTTTTACATTTTTGACATATAGATTGTCCggaccaatatatatatatatatatatatatatatatatatatatatatatatatatgaaaacaATACCTAAggaaatccacacacacacacacacccccctagAGTGCATGCATCAAATGCAAGTCAATAGAGACTGAAGAGTGAGTGATTTTACAGCATTGTCCCTCTTTCTCAGATCTTAAACATGTTCACATCTTAATAATTTTTGCTATATAGATTGTCTGGaccaatatataaatataaaaacaatATCTAAAGAAATCCACACACACtcctatagtatattatacagcaTAAGCAAATCCAATGTAAGTCAATGGCGAGTGAGTCCTGCTACAgcattctccctctttctctccctctctcacaagcACACGCCTGTGTATACACACCACAGACATCAATGCacacctgtgtttgtgtgtgtgtgtgtgtatgtctgtggtatgtgtgtgtgtgataaaatTACTCCATTGAATTTGCttatactgtatgtactctaGGGTTGTCTGTGTGAGAGGGCGTGGATGTCTTTAAATAttgtttttatattcatataaTGGTCTAAATAATCTACATAGCAAACATTATGATCTGAACATGTTTAAGagctgagaaagagagaacatgttgtaaaatgtttctctctgcaGTCTCCATTGGATTTGCAAATACTGCATGTActctaggggtgtgtgtgtgagagagtgagtggattTCTTTCAATATTGTTTTCATATTTATATTGGTCCGGACAATCTATATACCAAAAATTATTAAGATCTGATCATTTGAACATGTATTCACATGACATGATTCGTGTAATATGTCAAATACAGTAACCCCATGTGTCCAAAGACTAAATATAGTACGATACAGAAACGCCTGTAGTTCACAAACGAGTTGAATCATCTATTTGGCATATTTGGGCTTAACGGGTCAAAGAACAATACTTTCTGCTTTTAAACTATATAATTCTGAAATGTATTTCAAAATACATATGCTGAAGTCATTTTAATGATTATTATTGTCACAAAACCCCAATTTTGGAGGTATGATAGAAAATGACAATCTTAAAACGTCAATGTGGCCTGTCTAGACACTTGTACTAACTATGTTATCACTAAATGTAATGCATTTACACCAAATAGAATTTGTTCAGTGGCACATTTTGATATTGTACTAAATATAGTACATGGAGGTGAATGGGTTAGACAATATGGTAATTGTGTCACCTTCTCTTCTGATTGAGTGGGTGGTATTTTTGACAAattgctttatatatatatatacacacagaattGTTTTAGATCTACAGGCGTGCCCAAGCAGCAGGGGCTGGGGTAGAGTTGGAATTCAGCAGCAGTCTCTCAGTGGGAAGTttgggttaaccctaacccctacccatcTGACCTCTTAACCCTGAGCAGGCCACAGTCAAACCCCGGCTGTCACGTTCTCTCTTTTCACAGAGGAAAAGTACTGCTCTCCACTCATTCACCTGTGCACCTGAAGATACATCCTATCCCTCTATACTCCCTCTATCACATGTCGTTCCTCATTTCTCTCAATCCCCCTTTCCATTTTCACCTTATACAccgtactgtatatatatgattATAccagatttcttttttttttttactgtgaatGCTTTTGTTCTGCACCCCTTCCTTCTCCGTAGTTTATTGGTTGCTCTCTCATGTGGAATGTTTGTGCTGAGCCAATCGAATGTTGTGTTTACATTAAAGCCACTTTTCCTAACTA

Function

GO:

id name namespace
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function

KEGG:

id description
K04534 GNAO, G-ALPHA-O; guanine nucleotide-binding protein G(o) subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610018 lncRNA downstream 20583 68641673 ~ 68644591 (-) True G538678
TU610012 lncRNA downstream 28509 68629984 ~ 68636665 (-) True G538674
TU609993 lncRNA downstream 53467 68611489 ~ 68611707 (-) True G538665
TU609729 lncRNA downstream 119299 68545593 ~ 68545875 (-) True G538459
TU609727 lncRNA downstream 157629 68505207 ~ 68507545 (-) True G538457
TU610041 lncRNA upstream 4149 68681851 ~ 68682214 (-) True G538698
TU610045 lncRNA upstream 18506 68696208 ~ 68696978 (-) True G538701
TU610056 lncRNA upstream 26046 68703748 ~ 68703977 (-) True G538712
TU610057 lncRNA upstream 26545 68704247 ~ 68704456 (-) True G538713
TU610058 lncRNA upstream 27239 68704941 ~ 68705166 (-) True G538714
XM_036980828.1 mRNA downstream 37790 68624366 ~ 68627384 (-) True pigb
XM_021607410.2 mRNA downstream 37791 68623434 ~ 68627383 (-) False pigb
XM_036980825.1 mRNA downstream 37791 68623434 ~ 68627383 (-) False pigb
XM_036980827.1 mRNA downstream 37873 68623434 ~ 68627301 (-) False pigb
XM_021607411.2 mRNA downstream 37955 68623434 ~ 68627219 (-) False pigb
XM_036979131.1 mRNA upstream 5469 68683171 ~ 68686771 (-) False tradd
XM_021604936.2 mRNA upstream 5469 68683171 ~ 68695705 (-) False tradd
XM_021604935.2 mRNA upstream 5469 68683171 ~ 68695735 (-) False tradd
NM_001124639.2 mRNA upstream 5507 68683209 ~ 68685535 (-) True tradd
XM_036980831.1 mRNA upstream 20548 68698250 ~ 68707033 (-) True LOC110526952
TU609730 other downstream 148493 68510315 ~ 68516681 (-) True G538460
TU609527 other downstream 520267 68142251 ~ 68144907 (-) True G538277
TU607613 other downstream 2115200 66549367 ~ 66549974 (-) True G536630
TU607649 other downstream 2160149 66500388 ~ 66505025 (-) True LOC110526387
TU607202 other downstream 2383555 66277202 ~ 66281619 (-) False LOC110526379
TU610131 other upstream 129711 68807413 ~ 68811230 (-) True LOC110526447
TU610756 other upstream 271818 68949520 ~ 68953664 (-) True LOC110526455
TU610759 other upstream 325041 69002743 ~ 69005665 (-) True G539306
TU610933 other upstream 595416 69273118 ~ 69287090 (-) False LOC110526462
TU610935 other upstream 595416 69273118 ~ 69289496 (-) False LOC110526462

Expression Profile